RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 FAT3Q8TDW7 4589 aa4.39□□□□□ -1.71
CPNE4-211ENST00000514439 SEC61GP60059 68 aa4.38□□□□□ -1.71
CPNE4-211ENST00000514439 CDC42SE1Q9NRR8 79 aa4.37□□□□□ -1.71
CPNE4-211ENST00000514439 A0A1B0GU69 56 aa4.36□□□□□ -1.71
CPNE4-211ENST00000514439 DMBT1Q9UGM3 2413 aaPredicted RBP4.35□□□□□ -1.71
CPNE4-211ENST00000514439 KIAA1109Q2LD37 5005 aa4.35□□□□□ -1.71
CPNE4-211ENST00000514439 MT1HL1P0DM35 61 aa4.34□□□□□ -1.72
CPNE4-211ENST00000514439 KRTAP9-9Q9BYP9 154 aa4.34□□□□□ -1.72
CPNE4-211ENST00000514439 KRTAP9-4Q9BYQ2 154 aa4.34□□□□□ -1.72
CPNE4-211ENST00000514439 KRTAP3-1Q9BYR8 98 aa4.34□□□□□ -1.72
CPNE4-211ENST00000514439 SPTSSBQ8NFR3 76 aa4.33□□□□□ -1.72
CPNE4-211ENST00000514439 MYCBP2O75592 4640 aa4.32□□□□□ -1.72
CPNE4-211ENST00000514439 ATP11AUNQ6ZP68 121 aa4.32□□□□□ -1.72
CPNE4-211ENST00000514439 RPL37P61927 97 aaKnown RBP4.31□□□□□ -1.72
CPNE4-211ENST00000514439 PMAIP1Q13794 54 aa4.3□□□□□ -1.72
CPNE4-211ENST00000514439 COX6B2Q6YFQ2 88 aa4.29□□□□□ -1.72
CPNE4-211ENST00000514439 EPPK1P58107 5090 aaKnown RBP4.28□□□□□ -1.72
CPNE4-211ENST00000514439 KRTAP4-8A0A0G2JLE6 195 aa4.28□□□□□ -1.72
CPNE4-211ENST00000514439 UQCR11O14957 56 aa4.26□□□□□ -1.73
CPNE4-211ENST00000514439 SPATA8Q6RVD6 105 aa4.25□□□□□ -1.73
CPNE4-211ENST00000514439 A6NN06 94 aa4.24□□□□□ -1.73
CPNE4-211ENST00000514439 MIR22HGQ0VDD5 57 aa4.24□□□□□ -1.73
CPNE4-211ENST00000514439 KRTAP9-8Q9BYQ0 159 aa4.23□□□□□ -1.73
CPNE4-211ENST00000514439 KRTAP4-5Q9BYR2 181 aa4.22□□□□□ -1.73
CPNE4-211ENST00000514439 TPRXLQ17RH7 258 aa4.21□□□□□ -1.74
CPNE4-211ENST00000514439 LCE1DQ5T752 114 aa4.18□□□□□ -1.74
CPNE4-211ENST00000514439 KTN1-AS1Q86SY8 53 aa4.18□□□□□ -1.74
CPNE4-211ENST00000514439 KRTAP19-4Q3LI73 84 aa4.17□□□□□ -1.74
CPNE4-211ENST00000514439 A0A1B0GU33 70 aa4.16□□□□□ -1.74
CPNE4-211ENST00000514439 H0YAA0 97 aa4.16□□□□□ -1.74
CPNE4-211ENST00000514439 KRTAP5-3Q6L8H2 238 aa4.16□□□□□ -1.74
CPNE4-211ENST00000514439 H1FX-AS1Q4G0G2 97 aa4.15□□□□□ -1.75
CPNE4-211ENST00000514439 S4R3F8 94 aa4.15□□□□□ -1.75
CPNE4-211ENST00000514439 LRP2P98164 4655 aa4.14□□□□□ -1.75
CPNE4-211ENST00000514439 KRTAP4-7Q9BYR0 210 aa4.13□□□□□ -1.75
CPNE4-211ENST00000514439 LPAP08519 4548 aa4.13□□□□□ -1.75
CPNE4-211ENST00000514439 H3BS24 57 aa4.13□□□□□ -1.75
CPNE4-211ENST00000514439 ABCA13Q86UQ4 5058 aa4.13□□□□□ -1.75
CPNE4-211ENST00000514439 KRTAP10-6P60371 365 aaPredicted RBP4.09□□□□□ -1.75
CPNE4-211ENST00000514439 RBM12B-AS1Q9P1G2 102 aa4.07□□□□□ -1.76
CPNE4-211ENST00000514439 KRTAP4-9Q9BYQ8 210 aa4.05□□□□□ -1.76
CPNE4-211ENST00000514439 HERC2O95714 4834 aa4.05□□□□□ -1.76
CPNE4-211ENST00000514439 ADM2Q7Z4H4 148 aa4.05□□□□□ -1.76
CPNE4-211ENST00000514439 PRAC1Q96KF2 57 aa4.04□□□□□ -1.76
CPNE4-211ENST00000514439 P0C880 135 aa4.04□□□□□ -1.76
CPNE4-211ENST00000514439 SEC61BP60468 96 aaKnown RBP4.04□□□□□ -1.76
CPNE4-211ENST00000514439 KRTAP13-4Q3LI77 160 aa4.04□□□□□ -1.76
CPNE4-211ENST00000514439 LCE4AQ5TA78 99 aa4.04□□□□□ -1.76
CPNE4-211ENST00000514439 CSAG1Q6PB30 78 aa4.01□□□□□ -1.77
CPNE4-211ENST00000514439 BIRC6Q9NR09 4857 aa4.01□□□□□ -1.77
CPNE4-211ENST00000514439 KRTAP4-1Q9BYQ7 146 aa3.99□□□□□ -1.77
CPNE4-211ENST00000514439 A0A0D9SG42 100 aa3.98□□□□□ -1.77
CPNE4-211ENST00000514439 K7ERS5 55 aa3.98□□□□□ -1.77
CPNE4-211ENST00000514439 MUC17Q685J3 4493 aa3.97□□□□□ -1.77
CPNE4-211ENST00000514439 KRTAP9-7A8MTY7 169 aa3.97□□□□□ -1.77
CPNE4-211ENST00000514439 KRTAP4-2Q9BYR5 136 aa3.94□□□□□ -1.78
CPNE4-211ENST00000514439 KRTAP19-2Q3LHN2 52 aa3.91□□□□□ -1.78
CPNE4-211ENST00000514439 KRTAP4-11Q9BYQ6 195 aa3.9□□□□□ -1.78
CPNE4-211ENST00000514439 M0QZ58 72 aa3.9□□□□□ -1.79
CPNE4-211ENST00000514439 KRTAP12-2P59991 146 aa3.89□□□□□ -1.79
CPNE4-211ENST00000514439 LCE5AQ5TCM9 118 aa3.89□□□□□ -1.79
CPNE4-211ENST00000514439 KRTAP12-1P59990 96 aa3.87□□□□□ -1.79
CPNE4-211ENST00000514439 ROMO1P60602 79 aa3.87□□□□□ -1.79
CPNE4-211ENST00000514439 KRTAP25-1Q3LHN0 102 aa3.86□□□□□ -1.79
CPNE4-211ENST00000514439 PCLOQ9Y6V0 5065 aa3.85□□□□□ -1.79
CPNE4-211ENST00000514439 LINC01554Q52M75 96 aa3.85□□□□□ -1.79
CPNE4-211ENST00000514439 SPINT4Q6UDR6 99 aa3.85□□□□□ -1.79
CPNE4-211ENST00000514439 KRTAP9-3Q9BYQ3 159 aa3.85□□□□□ -1.79
CPNE4-211ENST00000514439 HERC1Q15751 4861 aa3.85□□□□□ -1.79
CPNE4-211ENST00000514439 R4GN34 69 aa3.84□□□□□ -1.79
CPNE4-211ENST00000514439 MUC2Q02817 5179 aa3.84□□□□□ -1.8
CPNE4-211ENST00000514439 CRIPTQ9P021 101 aa3.83□□□□□ -1.8
CPNE4-211ENST00000514439 HMCN2Q8NDA2 5059 aa3.83□□□□□ -1.8
CPNE4-211ENST00000514439 FLGP20930 4061 aaPredicted RBP3.8□□□□□ -1.8
CPNE4-211ENST00000514439 HMCN1Q96RW7 5635 aa3.77□□□□□ -1.81
CPNE4-211ENST00000514439 C10orf95Q9H7T3 257 aa3.73□□□□□ -1.81
CPNE4-211ENST00000514439 FAT4Q6V0I7 4981 aa3.66□□□□□ -1.82
CPNE4-211ENST00000514439 UBR4Q5T4S7 5183 aa3.66□□□□□ -1.82
CPNE4-211ENST00000514439 RNF213Q63HN8 5207 aa3.65□□□□□ -1.83
CPNE4-211ENST00000514439 MT1HP80294 61 aa3.63□□□□□ -1.83
CPNE4-211ENST00000514439 M0R2T5 61 aa3.62□□□□□ -1.83
CPNE4-211ENST00000514439 CAMK2N1Q7Z7J9 78 aa3.62□□□□□ -1.83
CPNE4-211ENST00000514439 SPRR2GQ9BYE4 73 aa3.57□□□□□ -1.84
CPNE4-211ENST00000514439 MT2AP02795 61 aa3.54□□□□□ -1.84
CPNE4-211ENST00000514439 MT1FP04733 61 aa3.54□□□□□ -1.84
CPNE4-211ENST00000514439 KRTAP10-10P60014 251 aa3.52□□□□□ -1.85
CPNE4-211ENST00000514439 PLAC4Q8WY50 150 aa3.5□□□□□ -1.85
CPNE4-211ENST00000514439 PP632Q6XCG6 107 aa3.48□□□□□ -1.85
CPNE4-211ENST00000514439 KRTAP15-1Q3LI76 137 aa3.48□□□□□ -1.85
CPNE4-211ENST00000514439 TNP1P09430 55 aa3.47□□□□□ -1.85
CPNE4-211ENST00000514439 KRTAP19-8Q3LI54 63 aa3.43□□□□□ -1.86
CPNE4-211ENST00000514439 KRTAP23-1A1A580 65 aa3.4□□□□□ -1.87
CPNE4-211ENST00000514439 MT1BP07438 61 aa3.39□□□□□ -1.87
CPNE4-211ENST00000514439 KRTAP10-5P60370 271 aa3.34□□□□□ -1.87
CPNE4-211ENST00000514439 MT1XP80297 61 aa3.34□□□□□ -1.87
CPNE4-211ENST00000514439 NDUFAF8A1L188 74 aa3.33□□□□□ -1.88
CPNE4-211ENST00000514439 LCE3AQ5TA76 89 aa3.32□□□□□ -1.88
CPNE4-211ENST00000514439 A0A0A0MQY5 61 aa3.3□□□□□ -1.88
CPNE4-211ENST00000514439 KRTAP10-7P60409 375 aaPredicted RBP3.24□□□□□ -1.89
CPNE4-211ENST00000514439 KRTAP10-12P60413 245 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms