RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 SMIM20Q8N5G0 67 aa10.26□□□□□ -0.77
USP53-208ENST00000514305 FLGP20930 4061 aaPredicted RBP10.25□□□□□ -0.77
USP53-208ENST00000514305 LOC101927531A0A1B0GV80 90 aa10.24□□□□□ -0.77
USP53-208ENST00000514305 MP68P56378 58 aa10.24□□□□□ -0.77
USP53-208ENST00000514305 H0Y9P7 68 aa10.23□□□□□ -0.77
USP53-208ENST00000514305 C5orf47Q569G3 176 aa10.23□□□□□ -0.77
USP53-208ENST00000514305 OCR1Q9BZK8 76 aa10.23□□□□□ -0.77
USP53-208ENST00000514305 FAM236AA0A1B0GUQ0 79 aa10.22□□□□□ -0.77
USP53-208ENST00000514305 FAM236BA0A1B0GV22 79 aa10.22□□□□□ -0.77
USP53-208ENST00000514305 MPLKIPQ8TAP9 179 aa10.21□□□□□ -0.77
USP53-208ENST00000514305 H3BPC8 53 aa10.17□□□□□ -0.78
USP53-208ENST00000514305 CYP4F30PQ9H0H9 118 aa10.14□□□□□ -0.79
USP53-208ENST00000514305 C1orf64Q8NEQ6 169 aa10.13□□□□□ -0.79
USP53-208ENST00000514305 TRAV7A0A075B6U4 112 aa10.12□□□□□ -0.79
USP53-208ENST00000514305 LINC00208Q96KT6 92 aa10.12□□□□□ -0.79
USP53-208ENST00000514305 C4orf26Q17RF5 130 aa10.06□□□□□ -0.8
USP53-208ENST00000514305 KRTAP23-1A1A580 65 aa10.04□□□□□ -0.8
USP53-208ENST00000514305 H1FX-AS1Q4G0G2 97 aa10.02□□□□□ -0.81
USP53-208ENST00000514305 SERP2Q8N6R1 65 aa9.98□□□□□ -0.81
USP53-208ENST00000514305 KRTAP15-1Q3LI76 137 aa9.92□□□□□ -0.82
USP53-208ENST00000514305 KRTAP9-8Q9BYQ0 159 aa9.9□□□□□ -0.82
USP53-208ENST00000514305 A8MUN3 132 aa9.89□□□□□ -0.83
USP53-208ENST00000514305 KLKP1Q107X0 134 aa9.88□□□□□ -0.83
USP53-208ENST00000514305 C20orf197Q8N268 126 aa9.83□□□□□ -0.84
USP53-208ENST00000514305 COX7CP15954 63 aa9.82□□□□□ -0.84
USP53-208ENST00000514305 S4R3F8 94 aa9.81□□□□□ -0.84
USP53-208ENST00000514305 SNURFQ9Y675 71 aa9.79□□□□□ -0.84
USP53-208ENST00000514305 ANAPC13Q9BS18 74 aa9.78□□□□□ -0.84
USP53-208ENST00000514305 MT2AP02795 61 aa9.76□□□□□ -0.85
USP53-208ENST00000514305 USH2AO75445 5202 aa9.75□□□□□ -0.85
USP53-208ENST00000514305 CSAG1Q6PB30 78 aa9.7□□□□□ -0.86
USP53-208ENST00000514305 NDUFC1O43677 76 aa9.69□□□□□ -0.86
USP53-208ENST00000514305 DMAC1Q96GE9 116 aa9.69□□□□□ -0.86
USP53-208ENST00000514305 MT1FP04733 61 aa9.68□□□□□ -0.86
USP53-208ENST00000514305 KRTAP10-10P60014 251 aa9.68□□□□□ -0.86
USP53-208ENST00000514305 SSPOA2VEC9 5147 aa9.67□□□□□ -0.86
USP53-208ENST00000514305 ACYP2P14621 99 aa9.67□□□□□ -0.86
USP53-208ENST00000514305 LCA10Q71F78 164 aa9.67□□□□□ -0.86
USP53-208ENST00000514305 SPANXA2-OT1Q8N9U9 137 aa9.67□□□□□ -0.86
USP53-208ENST00000514305 FCGBPQ9Y6R7 5405 aaPredicted RBP9.54□□□□□ -0.88
USP53-208ENST00000514305 SPTSSBQ8NFR3 76 aa9.52□□□□□ -0.89
USP53-208ENST00000514305 CHKB-CPT1BH3BT56 60 aa9.51□□□□□ -0.89
USP53-208ENST00000514305 H7BZZ5 65 aa9.49□□□□□ -0.89
USP53-208ENST00000514305 CCDC179H3BU77 68 aa9.46□□□□□ -0.9
USP53-208ENST00000514305 H0YAA0 97 aa9.39□□□□□ -0.91
USP53-208ENST00000514305 CYSTM1Q9H1C7 97 aa9.38□□□□□ -0.91
USP53-208ENST00000514305 ATP5EP56381 51 aaPredicted RBP9.36□□□□□ -0.91
USP53-208ENST00000514305 MACF1Q9UPN3 7388 aaKnown RBP9.34□□□□□ -0.91
USP53-208ENST00000514305 KRTAP19-6Q3LI70 58 aa9.32□□□□□ -0.92
USP53-208ENST00000514305 COA5Q86WW8 74 aa9.32□□□□□ -0.92
USP53-208ENST00000514305 SYNE2Q8WXH0 6885 aaKnown RBP9.28□□□□□ -0.92
USP53-208ENST00000514305 TMEM258P61165 79 aa9.26□□□□□ -0.93
USP53-208ENST00000514305 ADM2Q7Z4H4 148 aa9.26□□□□□ -0.93
USP53-208ENST00000514305 CRIPTQ9P021 101 aa9.26□□□□□ -0.93
USP53-208ENST00000514305 SEC61GP60059 68 aa9.13□□□□□ -0.95
USP53-208ENST00000514305 PCP4P48539 62 aa9.09□□□□□ -0.95
USP53-208ENST00000514305 SERP1Q9Y6X1 66 aa9.07□□□□□ -0.96
USP53-208ENST00000514305 SPRR2GQ9BYE4 73 aa9.06□□□□□ -0.96
USP53-208ENST00000514305 R4GN34 69 aa9.06□□□□□ -0.96
USP53-208ENST00000514305 P0C880 135 aa9.05□□□□□ -0.96
USP53-208ENST00000514305 KRTAP6-3Q3LI67 103 aa9□□□□□ -0.97
USP53-208ENST00000514305 M0QZ58 72 aa8.96□□□□□ -0.98
USP53-208ENST00000514305 Q5VV11 94 aa8.95□□□□□ -0.98
USP53-208ENST00000514305 KRTAP19-8Q3LI54 63 aa8.91□□□□□ -0.98
USP53-208ENST00000514305 A0A1B0GU69 56 aa8.9□□□□□ -0.98
USP53-208ENST00000514305 PRR15LQ9BU68 103 aa8.88□□□□□ -0.99
USP53-208ENST00000514305 A6NN06 94 aa8.87□□□□□ -0.99
USP53-208ENST00000514305 MT1BP07438 61 aa8.81□□□□□ -1
USP53-208ENST00000514305 A0A1B0GU33 70 aa8.8□□□□□ -1
USP53-208ENST00000514305 LINC01558Q9Y6Z2 57 aa8.8□□□□□ -1
USP53-208ENST00000514305 LINC01554Q52M75 96 aa8.79□□□□□ -1
USP53-208ENST00000514305 PLAC4Q8WY50 150 aa8.78□□□□□ -1
USP53-208ENST00000514305 LCE1AQ5T7P2 110 aa8.76□□□□□ -1.01
USP53-208ENST00000514305 V9GYY9 64 aa8.76□□□□□ -1.01
USP53-208ENST00000514305 RPS28P62857 69 aaKnown RBP8.7□□□□□ -1.02
USP53-208ENST00000514305 NEBP20929 6669 aa8.7□□□□□ -1.02
USP53-208ENST00000514305 KRTAP10-5P60370 271 aa8.68□□□□□ -1.02
USP53-208ENST00000514305 SMIM26A0A096LP01 95 aa8.67□□□□□ -1.02
USP53-208ENST00000514305 KRTAP13-4Q3LI77 160 aa8.62□□□□□ -1.03
USP53-208ENST00000514305 MUC12Q9UKN1 5478 aa8.61□□□□□ -1.03
USP53-208ENST00000514305 Q1T7F1 81 aa8.61□□□□□ -1.03
USP53-208ENST00000514305 SPATA8Q6RVD6 105 aa8.58□□□□□ -1.04
USP53-208ENST00000514305 PRO2289Q9P1D8 64 aa8.58□□□□□ -1.04
USP53-208ENST00000514305 UQCR11O14957 56 aa8.55□□□□□ -1.04
USP53-208ENST00000514305 A0A0D9SG42 100 aa8.53□□□□□ -1.04
USP53-208ENST00000514305 KRTAP5-9P26371 169 aa8.5□□□□□ -1.05
USP53-208ENST00000514305 KRTAP20-1Q3LI63 56 aa8.46□□□□□ -1.06
USP53-208ENST00000514305 PSPHP1O15172 72 aa8.45□□□□□ -1.06
USP53-208ENST00000514305 SPINT4Q6UDR6 99 aa8.43□□□□□ -1.06
USP53-208ENST00000514305 CAMK2N1Q7Z7J9 78 aa8.43□□□□□ -1.06
USP53-208ENST00000514305 KMT2DO14686 5537 aa8.38□□□□□ -1.07
USP53-208ENST00000514305 MDN1Q9NU22 5596 aa8.37□□□□□ -1.07
USP53-208ENST00000514305 MIR22HGQ0VDD5 57 aa8.37□□□□□ -1.07
USP53-208ENST00000514305 A8MU10 97 aa8.35□□□□□ -1.07
USP53-208ENST00000514305 MT1XP80297 61 aa8.35□□□□□ -1.07
USP53-208ENST00000514305 KRTAP12-1P59990 96 aa8.33□□□□□ -1.08
USP53-208ENST00000514305 A6NED7 52 aa8.28□□□□□ -1.08
USP53-208ENST00000514305 KRTAP12-2P59991 146 aa8.26□□□□□ -1.09
USP53-208ENST00000514305 K7ERS5 55 aa8.25□□□□□ -1.09
USP53-208ENST00000514305 SPRR2FQ96RM1 72 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms