RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 LCE5AQ5TCM9 118 aa5.62□□□□□ -1.51
LIMCH1-210ENST00000509454 ATOX1O00244 68 aa5.61□□□□□ -1.51
LIMCH1-210ENST00000509454 MT-ATP8P03928 68 aa5.61□□□□□ -1.51
LIMCH1-210ENST00000509454 CYP4F30PQ9H0H9 118 aa5.6□□□□□ -1.51
LIMCH1-210ENST00000509454 C1orf64Q8NEQ6 169 aa5.58□□□□□ -1.52
LIMCH1-210ENST00000509454 MP68P56378 58 aa5.58□□□□□ -1.52
LIMCH1-210ENST00000509454 OCR1Q9BZK8 76 aa5.57□□□□□ -1.52
LIMCH1-210ENST00000509454 IMUPQ9GZP8 106 aa5.57□□□□□ -1.52
LIMCH1-210ENST00000509454 LINC00208Q96KT6 92 aa5.56□□□□□ -1.52
LIMCH1-210ENST00000509454 C5orf47Q569G3 176 aa5.53□□□□□ -1.52
LIMCH1-210ENST00000509454 FAM236AA0A1B0GUQ0 79 aa5.52□□□□□ -1.53
LIMCH1-210ENST00000509454 FAM236BA0A1B0GV22 79 aa5.52□□□□□ -1.53
LIMCH1-210ENST00000509454 KRTAP3-1Q9BYR8 98 aa5.51□□□□□ -1.53
LIMCH1-210ENST00000509454 S4R3F8 94 aa5.51□□□□□ -1.53
LIMCH1-210ENST00000509454 MT2AP02795 61 aa5.48□□□□□ -1.53
LIMCH1-210ENST00000509454 KRTAP10-10P60014 251 aa5.48□□□□□ -1.53
LIMCH1-210ENST00000509454 H3BPC8 53 aa5.48□□□□□ -1.53
LIMCH1-210ENST00000509454 KLKP1Q107X0 134 aa5.48□□□□□ -1.53
LIMCH1-210ENST00000509454 SMIM20Q8N5G0 67 aa5.47□□□□□ -1.53
LIMCH1-210ENST00000509454 TRAV7A0A075B6U4 112 aa5.45□□□□□ -1.54
LIMCH1-210ENST00000509454 MT1FP04733 61 aa5.44□□□□□ -1.54
LIMCH1-210ENST00000509454 LCA10Q71F78 164 aa5.44□□□□□ -1.54
LIMCH1-210ENST00000509454 CSAG1Q6PB30 78 aa5.43□□□□□ -1.54
LIMCH1-210ENST00000509454 A8MUN3 132 aa5.39□□□□□ -1.55
LIMCH1-210ENST00000509454 NDUFC1O43677 76 aa5.37□□□□□ -1.55
LIMCH1-210ENST00000509454 SNURFQ9Y675 71 aa5.35□□□□□ -1.55
LIMCH1-210ENST00000509454 SERP2Q8N6R1 65 aa5.34□□□□□ -1.55
LIMCH1-210ENST00000509454 PCP4P48539 62 aa5.33□□□□□ -1.56
LIMCH1-210ENST00000509454 C20orf197Q8N268 126 aa5.32□□□□□ -1.56
LIMCH1-210ENST00000509454 DMAC1Q96GE9 116 aa5.32□□□□□ -1.56
LIMCH1-210ENST00000509454 CRCT1Q9UGL9 99 aa5.31□□□□□ -1.56
LIMCH1-210ENST00000509454 FSIP2Q5CZC0 6907 aa5.3□□□□□ -1.56
LIMCH1-210ENST00000509454 ACYP2P14621 99 aa5.26□□□□□ -1.57
LIMCH1-210ENST00000509454 COX7CP15954 63 aa5.23□□□□□ -1.57
LIMCH1-210ENST00000509454 CHKB-CPT1BH3BT56 60 aa5.23□□□□□ -1.57
LIMCH1-210ENST00000509454 ADM2Q7Z4H4 148 aa5.21□□□□□ -1.58
LIMCH1-210ENST00000509454 ANAPC13Q9BS18 74 aa5.21□□□□□ -1.58
LIMCH1-210ENST00000509454 USH2AO75445 5202 aa5.19□□□□□ -1.58
LIMCH1-210ENST00000509454 SPANXA2-OT1Q8N9U9 137 aa5.19□□□□□ -1.58
LIMCH1-210ENST00000509454 SPTSSBQ8NFR3 76 aa5.18□□□□□ -1.58
LIMCH1-210ENST00000509454 H0YAA0 97 aa5.18□□□□□ -1.58
LIMCH1-210ENST00000509454 CRIPTQ9P021 101 aa5.15□□□□□ -1.58
LIMCH1-210ENST00000509454 SPRR2GQ9BYE4 73 aa5.12□□□□□ -1.59
LIMCH1-210ENST00000509454 SSPOA2VEC9 5147 aa5.11□□□□□ -1.59
LIMCH1-210ENST00000509454 Q5VV11 94 aa5.11□□□□□ -1.59
LIMCH1-210ENST00000509454 CYSTM1Q9H1C7 97 aa5.1□□□□□ -1.59
LIMCH1-210ENST00000509454 A0A0A0MQY5 61 aa5.08□□□□□ -1.6
LIMCH1-210ENST00000509454 H7BZZ5 65 aa5.08□□□□□ -1.6
LIMCH1-210ENST00000509454 P0C880 135 aa5.08□□□□□ -1.6
LIMCH1-210ENST00000509454 COA5Q86WW8 74 aa5.07□□□□□ -1.6
LIMCH1-210ENST00000509454 CCDC179H3BU77 68 aa5.07□□□□□ -1.6
LIMCH1-210ENST00000509454 R4GN34 69 aa5.07□□□□□ -1.6
LIMCH1-210ENST00000509454 KRTAP19-8Q3LI54 63 aa5.05□□□□□ -1.6
LIMCH1-210ENST00000509454 M0QZ58 72 aa5.04□□□□□ -1.6
LIMCH1-210ENST00000509454 KRTAP19-6Q3LI70 58 aa5.04□□□□□ -1.6
LIMCH1-210ENST00000509454 MT1BP07438 61 aa5.03□□□□□ -1.6
LIMCH1-210ENST00000509454 SEC61GP60059 68 aa4.99□□□□□ -1.61
LIMCH1-210ENST00000509454 LINC01554Q52M75 96 aa4.99□□□□□ -1.61
LIMCH1-210ENST00000509454 KRTAP23-1A1A580 65 aa4.97□□□□□ -1.61
LIMCH1-210ENST00000509454 A6NN06 94 aa4.96□□□□□ -1.62
LIMCH1-210ENST00000509454 FCGBPQ9Y6R7 5405 aaPredicted RBP4.96□□□□□ -1.62
LIMCH1-210ENST00000509454 PLAC4Q8WY50 150 aa4.95□□□□□ -1.62
LIMCH1-210ENST00000509454 ATP5EP56381 51 aaPredicted RBP4.93□□□□□ -1.62
LIMCH1-210ENST00000509454 SERP1Q9Y6X1 66 aa4.93□□□□□ -1.62
LIMCH1-210ENST00000509454 KRTAP10-5P60370 271 aa4.88□□□□□ -1.63
LIMCH1-210ENST00000509454 TMEM258P61165 79 aa4.88□□□□□ -1.63
LIMCH1-210ENST00000509454 A0A1B0GU69 56 aa4.84□□□□□ -1.63
LIMCH1-210ENST00000509454 KRTAP15-1Q3LI76 137 aa4.84□□□□□ -1.63
LIMCH1-210ENST00000509454 PRO2289Q9P1D8 64 aa4.83□□□□□ -1.64
LIMCH1-210ENST00000509454 KRTAP13-4Q3LI77 160 aa4.82□□□□□ -1.64
LIMCH1-210ENST00000509454 A0A1B0GU33 70 aa4.81□□□□□ -1.64
LIMCH1-210ENST00000509454 MACF1Q9UPN3 7388 aaKnown RBP4.8□□□□□ -1.64
LIMCH1-210ENST00000509454 A0A0D9SG42 100 aa4.78□□□□□ -1.64
LIMCH1-210ENST00000509454 MT1XP80297 61 aa4.77□□□□□ -1.65
LIMCH1-210ENST00000509454 SPATA8Q6RVD6 105 aa4.77□□□□□ -1.65
LIMCH1-210ENST00000509454 PRR15LQ9BU68 103 aa4.77□□□□□ -1.65
LIMCH1-210ENST00000509454 CAMK2N1Q7Z7J9 78 aa4.72□□□□□ -1.65
LIMCH1-210ENST00000509454 LINC01558Q9Y6Z2 57 aa4.72□□□□□ -1.65
LIMCH1-210ENST00000509454 SYNE2Q8WXH0 6885 aaKnown RBP4.71□□□□□ -1.66
LIMCH1-210ENST00000509454 SPINT4Q6UDR6 99 aa4.7□□□□□ -1.66
LIMCH1-210ENST00000509454 SMIM26A0A096LP01 95 aa4.68□□□□□ -1.66
LIMCH1-210ENST00000509454 KRTAP6-3Q3LI67 103 aa4.67□□□□□ -1.66
LIMCH1-210ENST00000509454 A8MU10 97 aa4.64□□□□□ -1.67
LIMCH1-210ENST00000509454 KRTAP12-1P59990 96 aa4.61□□□□□ -1.67
LIMCH1-210ENST00000509454 KRTAP12-2P59991 146 aa4.6□□□□□ -1.67
LIMCH1-210ENST00000509454 V9GYY9 64 aa4.6□□□□□ -1.67
LIMCH1-210ENST00000509454 UQCR11O14957 56 aa4.58□□□□□ -1.68
LIMCH1-210ENST00000509454 KRTAP10-7P60409 375 aaPredicted RBP4.58□□□□□ -1.68
LIMCH1-210ENST00000509454 PSPHP1O15172 72 aa4.56□□□□□ -1.68
LIMCH1-210ENST00000509454 KRTAP8-1Q8IUC2 63 aa4.56□□□□□ -1.68
LIMCH1-210ENST00000509454 Q1T7F1 81 aa4.54□□□□□ -1.68
LIMCH1-210ENST00000509454 KRTAP10-12P60413 245 aa4.52□□□□□ -1.69
LIMCH1-210ENST00000509454 MIR22HGQ0VDD5 57 aa4.51□□□□□ -1.69
LIMCH1-210ENST00000509454 KRTAP5-9P26371 169 aa4.51□□□□□ -1.69
LIMCH1-210ENST00000509454 SPRR2FQ96RM1 72 aa4.51□□□□□ -1.69
LIMCH1-210ENST00000509454 RPS28P62857 69 aaKnown RBP4.5□□□□□ -1.69
LIMCH1-210ENST00000509454 KMT2DO14686 5537 aa4.48□□□□□ -1.69
LIMCH1-210ENST00000509454 A6NED7 52 aa4.43□□□□□ -1.7
LIMCH1-210ENST00000509454 K7ERS5 55 aa4.42□□□□□ -1.7
LIMCH1-210ENST00000509454 NEBP20929 6669 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms