RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 Q5W150 140 aa3.7□□□□□ -1.82
SYNE1-229ENST00000490866 SPANXA2-OT1Q8N9U9 137 aa3.7□□□□□ -1.82
SYNE1-229ENST00000490866 MPLKIPQ8TAP9 179 aa3.7□□□□□ -1.82
SYNE1-229ENST00000490866 ATP5EP56381 51 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-229ENST00000490866 SPINK7P58062 85 aa3.69□□□□□ -1.82
SYNE1-229ENST00000490866 A8MUN3 132 aa3.68□□□□□ -1.82
SYNE1-229ENST00000490866 RBM12B-AS1Q9P1G2 102 aa3.68□□□□□ -1.82
SYNE1-229ENST00000490866 PCOTHQ58A44 107 aa3.67□□□□□ -1.82
SYNE1-229ENST00000490866 IGKV2D-30A0A075B6S6 120 aa3.66□□□□□ -1.82
SYNE1-229ENST00000490866 TMEM258P61165 79 aa3.66□□□□□ -1.82
SYNE1-229ENST00000490866 HERC1Q15751 4861 aa3.65□□□□□ -1.82
SYNE1-229ENST00000490866 SNURFQ9Y675 71 aa3.65□□□□□ -1.83
SYNE1-229ENST00000490866 CCDC179H3BU77 68 aa3.64□□□□□ -1.83
SYNE1-229ENST00000490866 ACYP2P14621 99 aa3.64□□□□□ -1.83
SYNE1-229ENST00000490866 H7BZZ5 65 aa3.63□□□□□ -1.83
SYNE1-229ENST00000490866 HRES1P13985 223 aa3.62□□□□□ -1.83
SYNE1-229ENST00000490866 COX6B2Q6YFQ2 88 aa3.61□□□□□ -1.83
SYNE1-229ENST00000490866 LRP2P98164 4655 aa3.6□□□□□ -1.83
SYNE1-229ENST00000490866 SPTSSBQ8NFR3 76 aa3.6□□□□□ -1.83
SYNE1-229ENST00000490866 HMCN2Q8NDA2 5059 aa3.6□□□□□ -1.83
SYNE1-229ENST00000490866 DMAC1Q96GE9 116 aa3.59□□□□□ -1.83
SYNE1-229ENST00000490866 FAM236DA0A1B0GTK5 79 aa3.58□□□□□ -1.84
SYNE1-229ENST00000490866 FAM236CP0DP71 79 aa3.58□□□□□ -1.84
SYNE1-229ENST00000490866 RPS28P62857 69 aaKnown RBP3.57□□□□□ -1.84
SYNE1-229ENST00000490866 C4orf26Q17RF5 130 aa3.57□□□□□ -1.84
SYNE1-229ENST00000490866 H1FX-AS1Q4G0G2 97 aa3.56□□□□□ -1.84
SYNE1-229ENST00000490866 LPAP08519 4548 aa3.56□□□□□ -1.84
SYNE1-229ENST00000490866 CHKB-CPT1BH3BT56 60 aa3.55□□□□□ -1.84
SYNE1-229ENST00000490866 SERP1Q9Y6X1 66 aa3.54□□□□□ -1.84
SYNE1-229ENST00000490866 CYSTM1Q9H1C7 97 aa3.51□□□□□ -1.85
SYNE1-229ENST00000490866 V9GYY9 64 aa3.51□□□□□ -1.85
SYNE1-229ENST00000490866 CSAG1Q6PB30 78 aa3.5□□□□□ -1.85
SYNE1-229ENST00000490866 S4R3F8 94 aa3.49□□□□□ -1.85
SYNE1-229ENST00000490866 COA5Q86WW8 74 aa3.48□□□□□ -1.85
SYNE1-229ENST00000490866 MUC17Q685J3 4493 aa3.48□□□□□ -1.85
SYNE1-229ENST00000490866 SEC61GP60059 68 aa3.47□□□□□ -1.85
SYNE1-229ENST00000490866 SMIM26A0A096LP01 95 aa3.46□□□□□ -1.86
SYNE1-229ENST00000490866 PRR15LQ9BU68 103 aa3.45□□□□□ -1.86
SYNE1-229ENST00000490866 KRTAP4-1Q9BYQ7 146 aa3.45□□□□□ -1.86
SYNE1-229ENST00000490866 MUC2Q02817 5179 aa3.44□□□□□ -1.86
SYNE1-229ENST00000490866 UBR4Q5T4S7 5183 aa3.43□□□□□ -1.86
SYNE1-229ENST00000490866 H0YAA0 97 aa3.42□□□□□ -1.86
SYNE1-229ENST00000490866 LCA10Q71F78 164 aa3.42□□□□□ -1.86
SYNE1-229ENST00000490866 KRTAP2-2Q9BYT5 123 aa3.42□□□□□ -1.86
SYNE1-229ENST00000490866 MT3P25713 68 aa3.41□□□□□ -1.86
SYNE1-229ENST00000490866 Q1T7F1 81 aa3.41□□□□□ -1.86
SYNE1-229ENST00000490866 M0R2T5 61 aa3.39□□□□□ -1.87
SYNE1-229ENST00000490866 KRTAP19-2Q3LHN2 52 aa3.39□□□□□ -1.87
SYNE1-229ENST00000490866 RNF213Q63HN8 5207 aa3.38□□□□□ -1.87
SYNE1-229ENST00000490866 A0A1B0GU69 56 aa3.38□□□□□ -1.87
SYNE1-229ENST00000490866 LINC01558Q9Y6Z2 57 aa3.38□□□□□ -1.87
SYNE1-229ENST00000490866 FLGP20930 4061 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-229ENST00000490866 CRIPTQ9P021 101 aa3.36□□□□□ -1.87
SYNE1-229ENST00000490866 MT1HP80294 61 aa3.33□□□□□ -1.88
SYNE1-229ENST00000490866 KRTAP10-6P60371 365 aaPredicted RBP3.32□□□□□ -1.88
SYNE1-229ENST00000490866 M0QZ58 72 aa3.31□□□□□ -1.88
SYNE1-229ENST00000490866 FAT4Q6V0I7 4981 aa3.3□□□□□ -1.88
SYNE1-229ENST00000490866 UQCR11O14957 56 aa3.3□□□□□ -1.88
SYNE1-229ENST00000490866 KRTAP10-7P60409 375 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-229ENST00000490866 A0A1B0GU33 70 aa3.29□□□□□ -1.88
SYNE1-229ENST00000490866 ADM2Q7Z4H4 148 aa3.29□□□□□ -1.88
SYNE1-229ENST00000490866 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.28□□□□□ -1.88
SYNE1-229ENST00000490866 R4GN34 69 aa3.26□□□□□ -1.89
SYNE1-229ENST00000490866 Q5VV11 94 aa3.25□□□□□ -1.89
SYNE1-229ENST00000490866 PSPHP1O15172 72 aa3.24□□□□□ -1.89
SYNE1-229ENST00000490866 LCE1EQ5T753 118 aa3.23□□□□□ -1.89
SYNE1-229ENST00000490866 A0A0A0MQY5 61 aa3.22□□□□□ -1.89
SYNE1-229ENST00000490866 A6NED7 52 aa3.22□□□□□ -1.89
SYNE1-229ENST00000490866 KRTAP10-10P60014 251 aa3.22□□□□□ -1.89
SYNE1-229ENST00000490866 K7ERS5 55 aa3.21□□□□□ -1.9
SYNE1-229ENST00000490866 MIR22HGQ0VDD5 57 aa3.2□□□□□ -1.9
SYNE1-229ENST00000490866 A6NN06 94 aa3.19□□□□□ -1.9
SYNE1-229ENST00000490866 P0C880 135 aa3.19□□□□□ -1.9
SYNE1-229ENST00000490866 SPATA8Q6RVD6 105 aa3.19□□□□□ -1.9
SYNE1-229ENST00000490866 KRTAP5-11Q6L8G4 156 aa3.17□□□□□ -1.9
SYNE1-229ENST00000490866 SPRR2GQ9BYE4 73 aa3.17□□□□□ -1.9
SYNE1-229ENST00000490866 CDC42SE1Q9NRR8 79 aa3.17□□□□□ -1.9
SYNE1-229ENST00000490866 MT2AP02795 61 aa3.16□□□□□ -1.9
SYNE1-229ENST00000490866 PLAC4Q8WY50 150 aa3.13□□□□□ -1.91
SYNE1-229ENST00000490866 MT1FP04733 61 aa3.12□□□□□ -1.91
SYNE1-229ENST00000490866 BRK1Q8WUW1 75 aa3.1□□□□□ -1.91
SYNE1-229ENST00000490866 LINC01554Q52M75 96 aa3.09□□□□□ -1.91
SYNE1-229ENST00000490866 KRTAP19-8Q3LI54 63 aa3.07□□□□□ -1.92
SYNE1-229ENST00000490866 PRO0628Q9UI54 55 aa3.07□□□□□ -1.92
SYNE1-229ENST00000490866 A0A0D9SG42 100 aa3.06□□□□□ -1.92
SYNE1-229ENST00000490866 KRTAP13-4Q3LI77 160 aa3.06□□□□□ -1.92
SYNE1-229ENST00000490866 SPINT4Q6UDR6 99 aa3.05□□□□□ -1.92
SYNE1-229ENST00000490866 CAMK2N1Q7Z7J9 78 aa3.04□□□□□ -1.92
SYNE1-229ENST00000490866 PRO2289Q9P1D8 64 aa3.04□□□□□ -1.92
SYNE1-229ENST00000490866 A8MU10 97 aa3.02□□□□□ -1.93
SYNE1-229ENST00000490866 KRTAP12-1P59990 96 aa3.02□□□□□ -1.93
SYNE1-229ENST00000490866 PMAIP1Q13794 54 aa2.99□□□□□ -1.93
SYNE1-229ENST00000490866 KRTAP12-2P59991 146 aa2.98□□□□□ -1.93
SYNE1-229ENST00000490866 KRTAP10-5P60370 271 aa2.95□□□□□ -1.94
SYNE1-229ENST00000490866 MT1BP07438 61 aa2.94□□□□□ -1.94
SYNE1-229ENST00000490866 ROMO1P60602 79 aa2.94□□□□□ -1.94
SYNE1-229ENST00000490866 FSIP2Q5CZC0 6907 aa2.92□□□□□ -1.94
SYNE1-229ENST00000490866 TNP1P09430 55 aa2.92□□□□□ -1.94
SYNE1-229ENST00000490866 KRTAP25-1Q3LHN0 102 aa2.92□□□□□ -1.94
SYNE1-229ENST00000490866 KRTAP10-12P60413 245 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms