RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 FLGP20930 4061 aaPredicted RBP8.62□□□□□ -1.03
VIM-205ENST00000485947 SPANXA2-OT1Q8N9U9 137 aa8.62□□□□□ -1.03
VIM-205ENST00000485947 MPLKIPQ8TAP9 179 aa8.57□□□□□ -1.04
VIM-205ENST00000485947 TMEM258P61165 79 aa8.56□□□□□ -1.04
VIM-205ENST00000485947 C4orf26Q17RF5 130 aa8.56□□□□□ -1.04
VIM-205ENST00000485947 RBM12B-AS1Q9P1G2 102 aa8.55□□□□□ -1.04
VIM-205ENST00000485947 ATP5EP56381 51 aaPredicted RBP8.53□□□□□ -1.04
VIM-205ENST00000485947 LOC100996750A0A140TA64 210 aa8.52□□□□□ -1.05
VIM-205ENST00000485947 KRTAP4-6Q9BYQ5 205 aa8.52□□□□□ -1.05
VIM-205ENST00000485947 A8MUN3 132 aa8.51□□□□□ -1.05
VIM-205ENST00000485947 FAM236DA0A1B0GTK5 79 aa8.5□□□□□ -1.05
VIM-205ENST00000485947 FAM236CP0DP71 79 aa8.5□□□□□ -1.05
VIM-205ENST00000485947 DMAC1Q96GE9 116 aa8.5□□□□□ -1.05
VIM-205ENST00000485947 SSPOA2VEC9 5147 aa8.45□□□□□ -1.06
VIM-205ENST00000485947 ACYP2P14621 99 aa8.43□□□□□ -1.06
VIM-205ENST00000485947 KRTAP9-8Q9BYQ0 159 aa8.43□□□□□ -1.06
VIM-205ENST00000485947 KRTAP3-1Q9BYR8 98 aa8.43□□□□□ -1.06
VIM-205ENST00000485947 H1FX-AS1Q4G0G2 97 aa8.39□□□□□ -1.07
VIM-205ENST00000485947 USH2AO75445 5202 aa8.36□□□□□ -1.07
VIM-205ENST00000485947 FCGBPQ9Y6R7 5405 aaPredicted RBP8.36□□□□□ -1.07
VIM-205ENST00000485947 COA5Q86WW8 74 aa8.31□□□□□ -1.08
VIM-205ENST00000485947 MT2AP02795 61 aa8.29□□□□□ -1.08
VIM-205ENST00000485947 CHKB-CPT1BH3BT56 60 aa8.28□□□□□ -1.08
VIM-205ENST00000485947 SERP1Q9Y6X1 66 aa8.28□□□□□ -1.08
VIM-205ENST00000485947 S4R3F8 94 aa8.28□□□□□ -1.08
VIM-205ENST00000485947 MACF1Q9UPN3 7388 aaKnown RBP8.26□□□□□ -1.09
VIM-205ENST00000485947 SYNE2Q8WXH0 6885 aaKnown RBP8.25□□□□□ -1.09
VIM-205ENST00000485947 LCA10Q71F78 164 aa8.22□□□□□ -1.09
VIM-205ENST00000485947 MT1FP04733 61 aa8.21□□□□□ -1.1
VIM-205ENST00000485947 KRTAP10-10P60014 251 aa8.21□□□□□ -1.1
VIM-205ENST00000485947 SPTSSBQ8NFR3 76 aa8.21□□□□□ -1.1
VIM-205ENST00000485947 RPS28P62857 69 aaKnown RBP8.18□□□□□ -1.1
VIM-205ENST00000485947 KRTAP19-1Q8IUB9 90 aa8.17□□□□□ -1.1
VIM-205ENST00000485947 KRTAP9-3Q9BYQ3 159 aa8.17□□□□□ -1.1
VIM-205ENST00000485947 CSAG1Q6PB30 78 aa8.13□□□□□ -1.11
VIM-205ENST00000485947 SMIM26A0A096LP01 95 aa8.03□□□□□ -1.12
VIM-205ENST00000485947 H0YAA0 97 aa7.97□□□□□ -1.13
VIM-205ENST00000485947 V9GYY9 64 aa7.96□□□□□ -1.14
VIM-205ENST00000485947 LINC01558Q9Y6Z2 57 aa7.95□□□□□ -1.14
VIM-205ENST00000485947 KRTAP6-3Q3LI67 103 aa7.94□□□□□ -1.14
VIM-205ENST00000485947 Q1T7F1 81 aa7.92□□□□□ -1.14
VIM-205ENST00000485947 SEC61GP60059 68 aa7.91□□□□□ -1.14
VIM-205ENST00000485947 KRTAP19-6Q3LI70 58 aa7.89□□□□□ -1.15
VIM-205ENST00000485947 A0A1B0GU69 56 aa7.88□□□□□ -1.15
VIM-205ENST00000485947 PRR15LQ9BU68 103 aa7.87□□□□□ -1.15
VIM-205ENST00000485947 KRTAP4-8Q9BYQ9 185 aa7.86□□□□□ -1.15
VIM-205ENST00000485947 ADM2Q7Z4H4 148 aa7.85□□□□□ -1.15
VIM-205ENST00000485947 NEBP20929 6669 aa7.82□□□□□ -1.16
VIM-205ENST00000485947 P0C880 135 aa7.77□□□□□ -1.17
VIM-205ENST00000485947 PSPHP1O15172 72 aa7.73□□□□□ -1.17
VIM-205ENST00000485947 Q5VV11 94 aa7.7□□□□□ -1.18
VIM-205ENST00000485947 CRIPTQ9P021 101 aa7.7□□□□□ -1.18
VIM-205ENST00000485947 A0A1B0GU33 70 aa7.69□□□□□ -1.18
VIM-205ENST00000485947 H3BS24 57 aa7.68□□□□□ -1.18
VIM-205ENST00000485947 KRTAP20-1Q3LI63 56 aa7.68□□□□□ -1.18
VIM-205ENST00000485947 SPRR2GQ9BYE4 73 aa7.66□□□□□ -1.18
VIM-205ENST00000485947 MUC12Q9UKN1 5478 aa7.64□□□□□ -1.19
VIM-205ENST00000485947 M0QZ58 72 aa7.63□□□□□ -1.19
VIM-205ENST00000485947 R4GN34 69 aa7.63□□□□□ -1.19
VIM-205ENST00000485947 UQCR11O14957 56 aa7.62□□□□□ -1.19
VIM-205ENST00000485947 KRTAP19-8Q3LI54 63 aa7.6□□□□□ -1.19
VIM-205ENST00000485947 KRTAP4-12Q9BQ66 201 aa7.57□□□□□ -1.2
VIM-205ENST00000485947 MT1BP07438 61 aa7.54□□□□□ -1.2
VIM-205ENST00000485947 KRTAP13-4Q3LI77 160 aa7.54□□□□□ -1.2
VIM-205ENST00000485947 A6NED7 52 aa7.53□□□□□ -1.2
VIM-205ENST00000485947 SPATA8Q6RVD6 105 aa7.52□□□□□ -1.21
VIM-205ENST00000485947 A6NN06 94 aa7.51□□□□□ -1.21
VIM-205ENST00000485947 MIR22HGQ0VDD5 57 aa7.5□□□□□ -1.21
VIM-205ENST00000485947 LCE3BQ5TA77 95 aa7.49□□□□□ -1.21
VIM-205ENST00000485947 KRTAP10-5P60370 271 aa7.42□□□□□ -1.22
VIM-205ENST00000485947 LINC01554Q52M75 96 aa7.41□□□□□ -1.22
VIM-205ENST00000485947 CDC42SE1Q9NRR8 79 aa7.41□□□□□ -1.22
VIM-205ENST00000485947 A0A0D9SG42 100 aa7.38□□□□□ -1.23
VIM-205ENST00000485947 A8MU10 97 aa7.38□□□□□ -1.23
VIM-205ENST00000485947 KRTAP9-9Q9BYP9 154 aa7.34□□□□□ -1.23
VIM-205ENST00000485947 KRTAP9-4Q9BYQ2 154 aa7.34□□□□□ -1.23
VIM-205ENST00000485947 KRTAP5-9P26371 169 aa7.3□□□□□ -1.24
VIM-205ENST00000485947 BRK1Q8WUW1 75 aa7.3□□□□□ -1.24
VIM-205ENST00000485947 MDN1Q9NU22 5596 aa7.3□□□□□ -1.24
VIM-205ENST00000485947 KRTAP2-3P0C7H8 128 aa7.29□□□□□ -1.24
VIM-205ENST00000485947 KRTAP2-4Q9BYR9 128 aa7.29□□□□□ -1.24
VIM-205ENST00000485947 KMT2DO14686 5537 aa7.28□□□□□ -1.24
VIM-205ENST00000485947 KRTAP12-1P59990 96 aa7.27□□□□□ -1.25
VIM-205ENST00000485947 SPINT4Q6UDR6 99 aa7.25□□□□□ -1.25
VIM-205ENST00000485947 PLAC4Q8WY50 150 aa7.25□□□□□ -1.25
VIM-205ENST00000485947 K7ERS5 55 aa7.24□□□□□ -1.25
VIM-205ENST00000485947 KRTAP12-2P59991 146 aa7.22□□□□□ -1.25
VIM-205ENST00000485947 PRO2289Q9P1D8 64 aa7.22□□□□□ -1.25
VIM-205ENST00000485947 KRTAP4-8A0A0G2JLE6 195 aa7.2□□□□□ -1.26
VIM-205ENST00000485947 CAMK2N1Q7Z7J9 78 aa7.11□□□□□ -1.27
VIM-205ENST00000485947 MT1XP80297 61 aa7.08□□□□□ -1.28
VIM-205ENST00000485947 PRO0628Q9UI54 55 aa7.07□□□□□ -1.28
VIM-205ENST00000485947 LCE1DQ5T752 114 aa7.01□□□□□ -1.29
VIM-205ENST00000485947 KRTAP2-2Q9BYT5 123 aa7.01□□□□□ -1.29
VIM-205ENST00000485947 KRTAP2-1Q9BYU5 128 aa7.01□□□□□ -1.29
VIM-205ENST00000485947 KRTAP4-7Q9BYR0 210 aa6.94□□□□□ -1.3
VIM-205ENST00000485947 SPRR2EP22531 72 aa6.92□□□□□ -1.3
VIM-205ENST00000485947 SPRR2BP35325 72 aa6.92□□□□□ -1.3
VIM-205ENST00000485947 SPRR2AP35326 72 aa6.92□□□□□ -1.3
VIM-205ENST00000485947 PMAIP1Q13794 54 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms