RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 C4orf26Q17RF5 130 aa7.32□□□□□ -1.24
VARS-223ENST00000474643 SERP2Q8N6R1 65 aa7.32□□□□□ -1.24
VARS-223ENST00000474643 KRTAP9-3Q9BYQ3 159 aa7.32□□□□□ -1.24
VARS-223ENST00000474643 COX7CP15954 63 aa7.31□□□□□ -1.24
VARS-223ENST00000474643 LINC00208Q96KT6 92 aa7.31□□□□□ -1.24
VARS-223ENST00000474643 KRTAP19-1Q8IUB9 90 aa7.3□□□□□ -1.24
VARS-223ENST00000474643 CCDC179H3BU77 68 aa7.26□□□□□ -1.25
VARS-223ENST00000474643 FCGBPQ9Y6R7 5405 aaPredicted RBP7.22□□□□□ -1.25
VARS-223ENST00000474643 A8MUN3 132 aa7.18□□□□□ -1.26
VARS-223ENST00000474643 KLKP1Q107X0 134 aa7.18□□□□□ -1.26
VARS-223ENST00000474643 C20orf197Q8N268 126 aa7.15□□□□□ -1.26
VARS-223ENST00000474643 S4R3F8 94 aa7.15□□□□□ -1.26
VARS-223ENST00000474643 TMEM258P61165 79 aa7.14□□□□□ -1.27
VARS-223ENST00000474643 KRTAP3-1Q9BYR8 98 aa7.14□□□□□ -1.27
VARS-223ENST00000474643 NDUFC1O43677 76 aa7.12□□□□□ -1.27
VARS-223ENST00000474643 SNURFQ9Y675 71 aa7.11□□□□□ -1.27
VARS-223ENST00000474643 KRTAP19-6Q3LI70 58 aa7.1□□□□□ -1.27
VARS-223ENST00000474643 SPANXA2-OT1Q8N9U9 137 aa7.1□□□□□ -1.27
VARS-223ENST00000474643 MACF1Q9UPN3 7388 aaKnown RBP7.08□□□□□ -1.28
VARS-223ENST00000474643 CSAG1Q6PB30 78 aa7.07□□□□□ -1.28
VARS-223ENST00000474643 DMAC1Q96GE9 116 aa7.07□□□□□ -1.28
VARS-223ENST00000474643 RPS28P62857 69 aaKnown RBP7.06□□□□□ -1.28
VARS-223ENST00000474643 LCA10Q71F78 164 aa7.06□□□□□ -1.28
VARS-223ENST00000474643 ATP5EP56381 51 aaPredicted RBP7.04□□□□□ -1.28
VARS-223ENST00000474643 ACYP2P14621 99 aa7□□□□□ -1.29
VARS-223ENST00000474643 H7BZZ5 65 aa6.99□□□□□ -1.29
VARS-223ENST00000474643 SYNE2Q8WXH0 6885 aaKnown RBP6.95□□□□□ -1.3
VARS-223ENST00000474643 KRTAP3-3Q9BYR6 98 aa6.92□□□□□ -1.3
VARS-223ENST00000474643 CYSTM1Q9H1C7 97 aa6.92□□□□□ -1.3
VARS-223ENST00000474643 SERP1Q9Y6X1 66 aa6.92□□□□□ -1.3
VARS-223ENST00000474643 Q5VV11 94 aa6.88□□□□□ -1.31
VARS-223ENST00000474643 A6NN06 94 aa6.86□□□□□ -1.31
VARS-223ENST00000474643 SPTSSBQ8NFR3 76 aa6.86□□□□□ -1.31
VARS-223ENST00000474643 KRTAP6-3Q3LI67 103 aa6.84□□□□□ -1.31
VARS-223ENST00000474643 H0YAA0 97 aa6.83□□□□□ -1.32
VARS-223ENST00000474643 CHKB-CPT1BH3BT56 60 aa6.82□□□□□ -1.32
VARS-223ENST00000474643 SMIM26A0A096LP01 95 aa6.78□□□□□ -1.32
VARS-223ENST00000474643 COA5Q86WW8 74 aa6.78□□□□□ -1.32
VARS-223ENST00000474643 SPRR2GQ9BYE4 73 aa6.77□□□□□ -1.33
VARS-223ENST00000474643 MT1BP07438 61 aa6.74□□□□□ -1.33
VARS-223ENST00000474643 ADM2Q7Z4H4 148 aa6.74□□□□□ -1.33
VARS-223ENST00000474643 CRIPTQ9P021 101 aa6.73□□□□□ -1.33
VARS-223ENST00000474643 KRTAP19-8Q3LI54 63 aa6.72□□□□□ -1.33
VARS-223ENST00000474643 KRTAP10-5P60370 271 aa6.65□□□□□ -1.34
VARS-223ENST00000474643 V9GYY9 64 aa6.64□□□□□ -1.35
VARS-223ENST00000474643 KRTAP3-2Q9BYR7 98 aa6.59□□□□□ -1.35
VARS-223ENST00000474643 Q1T7F1 81 aa6.58□□□□□ -1.36
VARS-223ENST00000474643 R4GN34 69 aa6.58□□□□□ -1.36
VARS-223ENST00000474643 P0C880 135 aa6.57□□□□□ -1.36
VARS-223ENST00000474643 SEC61GP60059 68 aa6.55□□□□□ -1.36
VARS-223ENST00000474643 MUC12Q9UKN1 5478 aa6.54□□□□□ -1.36
VARS-223ENST00000474643 M0QZ58 72 aa6.53□□□□□ -1.36
VARS-223ENST00000474643 SVIPQ8NHG7 77 aa6.53□□□□□ -1.36
VARS-223ENST00000474643 NEBP20929 6669 aa6.53□□□□□ -1.36
VARS-223ENST00000474643 PRO2289Q9P1D8 64 aa6.5□□□□□ -1.37
VARS-223ENST00000474643 PLAC4Q8WY50 150 aa6.48□□□□□ -1.37
VARS-223ENST00000474643 KRTAP20-1Q3LI63 56 aa6.46□□□□□ -1.38
VARS-223ENST00000474643 LINC01554Q52M75 96 aa6.46□□□□□ -1.38
VARS-223ENST00000474643 LINC01558Q9Y6Z2 57 aa6.45□□□□□ -1.38
VARS-223ENST00000474643 A0A1B0GU69 56 aa6.44□□□□□ -1.38
VARS-223ENST00000474643 KRTAP5-9P26371 169 aa6.44□□□□□ -1.38
VARS-223ENST00000474643 PRR15LQ9BU68 103 aa6.43□□□□□ -1.38
VARS-223ENST00000474643 PRO0628Q9UI54 55 aa6.4□□□□□ -1.38
VARS-223ENST00000474643 MDN1Q9NU22 5596 aa6.38□□□□□ -1.39
VARS-223ENST00000474643 KMT2DO14686 5537 aa6.37□□□□□ -1.39
VARS-223ENST00000474643 A0A1B0GU33 70 aa6.36□□□□□ -1.39
VARS-223ENST00000474643 SPRR2FQ96RM1 72 aa6.35□□□□□ -1.39
VARS-223ENST00000474643 PSPHP1O15172 72 aa6.31□□□□□ -1.4
VARS-223ENST00000474643 MT1XP80297 61 aa6.31□□□□□ -1.4
VARS-223ENST00000474643 BRK1Q8WUW1 75 aa6.31□□□□□ -1.4
VARS-223ENST00000474643 KRTAP8-1Q8IUC2 63 aa6.29□□□□□ -1.4
VARS-223ENST00000474643 SPRR2EP22531 72 aa6.28□□□□□ -1.4
VARS-223ENST00000474643 SPRR2BP35325 72 aa6.28□□□□□ -1.4
VARS-223ENST00000474643 SPRR2AP35326 72 aa6.28□□□□□ -1.4
VARS-223ENST00000474643 KRTAP13-4Q3LI77 160 aa6.27□□□□□ -1.41
VARS-223ENST00000474643 KRTAP2-3P0C7H8 128 aa6.23□□□□□ -1.41
VARS-223ENST00000474643 KRTAP2-4Q9BYR9 128 aa6.23□□□□□ -1.41
VARS-223ENST00000474643 UQCR11O14957 56 aa6.22□□□□□ -1.41
VARS-223ENST00000474643 A6NED7 52 aa6.2□□□□□ -1.42
VARS-223ENST00000474643 KRTAP12-2P59991 146 aa6.2□□□□□ -1.42
VARS-223ENST00000474643 SPATA8Q6RVD6 105 aa6.18□□□□□ -1.42
VARS-223ENST00000474643 CDC42SE1Q9NRR8 79 aa6.18□□□□□ -1.42
VARS-223ENST00000474643 A0A0D9SG42 100 aa6.13□□□□□ -1.43
VARS-223ENST00000474643 CAMK2N1Q7Z7J9 78 aa6.11□□□□□ -1.43
VARS-223ENST00000474643 LCE1AQ5T7P2 110 aa6.09□□□□□ -1.43
VARS-223ENST00000474643 SPRR2DP22532 72 aa6.08□□□□□ -1.44
VARS-223ENST00000474643 MIR22HGQ0VDD5 57 aa6.08□□□□□ -1.44
VARS-223ENST00000474643 KRTAP4-8A0A0G2JLE6 195 aa6.07□□□□□ -1.44
VARS-223ENST00000474643 KRTAP4-8Q9BYQ9 185 aa6.07□□□□□ -1.44
VARS-223ENST00000474643 KRTAP12-1P59990 96 aa6.06□□□□□ -1.44
VARS-223ENST00000474643 SPINT4Q6UDR6 99 aa6.04□□□□□ -1.44
VARS-223ENST00000474643 A8MU10 97 aa6.03□□□□□ -1.44
VARS-223ENST00000474643 KRTAP10-7P60409 375 aaPredicted RBP6.03□□□□□ -1.44
VARS-223ENST00000474643 KRTAP2-2Q9BYT5 123 aa6.02□□□□□ -1.45
VARS-223ENST00000474643 KRTAP2-1Q9BYU5 128 aa6.02□□□□□ -1.45
VARS-223ENST00000474643 PMAIP1Q13794 54 aa6.01□□□□□ -1.45
VARS-223ENST00000474643 KRTAP10-12P60413 245 aa5.99□□□□□ -1.45
VARS-223ENST00000474643 K7ERS5 55 aa5.93□□□□□ -1.46
VARS-223ENST00000474643 LCE3BQ5TA77 95 aa5.9□□□□□ -1.46
VARS-223ENST00000474643 KTN1-AS1Q86SY8 53 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms