RNA–Protein interactions for RNA: ENST00000474564.1

COL12A1-206, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 3

Gene COL12A1, Length 499 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-206ENST00000474564 MUC17Q685J3 4493 aa5.13□□□□□ -1.59
COL12A1-206ENST00000474564 CSAG1Q6PB30 78 aa5.12□□□□□ -1.59
COL12A1-206ENST00000474564 SEC61GP60059 68 aa5.11□□□□□ -1.59
COL12A1-206ENST00000474564 PRR15LQ9BU68 103 aa5.1□□□□□ -1.59
COL12A1-206ENST00000474564 KRTAP19-2Q3LHN2 52 aa5.09□□□□□ -1.59
COL12A1-206ENST00000474564 LCA10Q71F78 164 aa5.08□□□□□ -1.6
COL12A1-206ENST00000474564 Q1T7F1 81 aa5.07□□□□□ -1.6
COL12A1-206ENST00000474564 LCE2CQ5TA81 110 aa5.07□□□□□ -1.6
COL12A1-206ENST00000474564 A0A1B0GU69 56 aa5.06□□□□□ -1.6
COL12A1-206ENST00000474564 LINC01558Q9Y6Z2 57 aa5.05□□□□□ -1.6
COL12A1-206ENST00000474564 PSPHP1O15172 72 aa5.04□□□□□ -1.6
COL12A1-206ENST00000474564 MT1HP80294 61 aa5.04□□□□□ -1.6
COL12A1-206ENST00000474564 KRTAP3-3Q9BYR6 98 aa4.97□□□□□ -1.61
COL12A1-206ENST00000474564 UBR4Q5T4S7 5183 aa4.96□□□□□ -1.61
COL12A1-206ENST00000474564 A6NED7 52 aa4.95□□□□□ -1.62
COL12A1-206ENST00000474564 H0YAA0 97 aa4.93□□□□□ -1.62
COL12A1-206ENST00000474564 LCE2AQ5TA79 106 aaPredicted RBP4.93□□□□□ -1.62
COL12A1-206ENST00000474564 Q5VV11 94 aa4.93□□□□□ -1.62
COL12A1-206ENST00000474564 MUC2Q02817 5179 aa4.92□□□□□ -1.62
COL12A1-206ENST00000474564 KRTAP10-6P60371 365 aaPredicted RBP4.9□□□□□ -1.63
COL12A1-206ENST00000474564 ADM2Q7Z4H4 148 aa4.9□□□□□ -1.63
COL12A1-206ENST00000474564 RNF213Q63HN8 5207 aa4.9□□□□□ -1.63
COL12A1-206ENST00000474564 UQCR11O14957 56 aa4.89□□□□□ -1.63
COL12A1-206ENST00000474564 BRK1Q8WUW1 75 aa4.88□□□□□ -1.63
COL12A1-206ENST00000474564 A0A1B0GU33 70 aa4.87□□□□□ -1.63
COL12A1-206ENST00000474564 KRTAP10-10P60014 251 aa4.86□□□□□ -1.63
COL12A1-206ENST00000474564 LORP23490 312 aaPredicted RBP4.85□□□□□ -1.63
COL12A1-206ENST00000474564 CRIPTQ9P021 101 aa4.85□□□□□ -1.63
COL12A1-206ENST00000474564 MIR22HGQ0VDD5 57 aa4.83□□□□□ -1.64
COL12A1-206ENST00000474564 KRTAP9-8Q9BYQ0 159 aa4.8□□□□□ -1.64
COL12A1-206ENST00000474564 MT2AP02795 61 aa4.79□□□□□ -1.64
COL12A1-206ENST00000474564 P0C880 135 aa4.79□□□□□ -1.64
COL12A1-206ENST00000474564 CDC42SE1Q9NRR8 79 aa4.79□□□□□ -1.64
COL12A1-206ENST00000474564 R4GN34 69 aa4.79□□□□□ -1.64
COL12A1-206ENST00000474564 FAT4Q6V0I7 4981 aa4.77□□□□□ -1.65
COL12A1-206ENST00000474564 M0QZ58 72 aa4.77□□□□□ -1.65
COL12A1-206ENST00000474564 FLGP20930 4061 aaPredicted RBP4.77□□□□□ -1.65
COL12A1-206ENST00000474564 SPATA8Q6RVD6 105 aa4.76□□□□□ -1.65
COL12A1-206ENST00000474564 KRTAP3-2Q9BYR7 98 aa4.75□□□□□ -1.65
COL12A1-206ENST00000474564 MT1FP04733 61 aa4.74□□□□□ -1.65
COL12A1-206ENST00000474564 K7ERS5 55 aa4.73□□□□□ -1.65
COL12A1-206ENST00000474564 A0A0D9SG42 100 aa4.72□□□□□ -1.65
COL12A1-206ENST00000474564 LINC01554Q52M75 96 aa4.7□□□□□ -1.66
COL12A1-206ENST00000474564 PRO0628Q9UI54 55 aa4.7□□□□□ -1.66
COL12A1-206ENST00000474564 A8MU10 97 aa4.67□□□□□ -1.66
COL12A1-206ENST00000474564 SPRR2GQ9BYE4 73 aa4.66□□□□□ -1.66
COL12A1-206ENST00000474564 KRTAP13-4Q3LI77 160 aa4.65□□□□□ -1.67
COL12A1-206ENST00000474564 KRTAP9-3Q9BYQ3 159 aa4.65□□□□□ -1.67
COL12A1-206ENST00000474564 SPINT4Q6UDR6 99 aa4.64□□□□□ -1.67
COL12A1-206ENST00000474564 LCE2DQ5TA82 110 aaPredicted RBP4.62□□□□□ -1.67
COL12A1-206ENST00000474564 PLAC4Q8WY50 150 aa4.61□□□□□ -1.67
COL12A1-206ENST00000474564 PMAIP1Q13794 54 aa4.6□□□□□ -1.67
COL12A1-206ENST00000474564 KRTAP19-1Q8IUB9 90 aa4.59□□□□□ -1.67
COL12A1-206ENST00000474564 A6NN06 94 aa4.57□□□□□ -1.68
COL12A1-206ENST00000474564 KRTAP19-8Q3LI54 63 aa4.54□□□□□ -1.68
COL12A1-206ENST00000474564 LCE2BO14633 110 aa4.51□□□□□ -1.69
COL12A1-206ENST00000474564 KRTAP12-1P59990 96 aa4.51□□□□□ -1.69
COL12A1-206ENST00000474564 CAMK2N1Q7Z7J9 78 aa4.51□□□□□ -1.69
COL12A1-206ENST00000474564 KRTAP12-2P59991 146 aa4.5□□□□□ -1.69
COL12A1-206ENST00000474564 KRTAP9-2Q9BYQ4 174 aa4.5□□□□□ -1.69
COL12A1-206ENST00000474564 PRO2289Q9P1D8 64 aa4.46□□□□□ -1.7
COL12A1-206ENST00000474564 MT1BP07438 61 aa4.44□□□□□ -1.7
COL12A1-206ENST00000474564 ROMO1P60602 79 aa4.41□□□□□ -1.7
COL12A1-206ENST00000474564 KTN1-AS1Q86SY8 53 aa4.38□□□□□ -1.71
COL12A1-206ENST00000474564 KRTAP19-6Q3LI70 58 aa4.34□□□□□ -1.71
COL12A1-206ENST00000474564 CRCT1Q9UGL9 99 aa4.34□□□□□ -1.71
COL12A1-206ENST00000474564 KRTAP10-5P60370 271 aa4.32□□□□□ -1.72
COL12A1-206ENST00000474564 MT1XP80297 61 aa4.27□□□□□ -1.73
COL12A1-206ENST00000474564 SVIPQ8NHG7 77 aa4.27□□□□□ -1.73
COL12A1-206ENST00000474564 PRAC1Q96KF2 57 aa4.26□□□□□ -1.73
COL12A1-206ENST00000474564 TNP1P09430 55 aa4.25□□□□□ -1.73
COL12A1-206ENST00000474564 C10orf95Q9H7T3 257 aa4.25□□□□□ -1.73
COL12A1-206ENST00000474564 KRTAP9-6A0A140TA67 174 aa4.24□□□□□ -1.73
COL12A1-206ENST00000474564 KRTAP25-1Q3LHN0 102 aa4.23□□□□□ -1.73
COL12A1-206ENST00000474564 USH2AO75445 5202 aa4.14□□□□□ -1.75
COL12A1-206ENST00000474564 PP632Q6XCG6 107 aa4.1□□□□□ -1.75
COL12A1-206ENST00000474564 KRTAP10-12P60413 245 aa4.09□□□□□ -1.75
COL12A1-206ENST00000474564 FSIP2Q5CZC0 6907 aa4.09□□□□□ -1.76
COL12A1-206ENST00000474564 KRTAP10-7P60409 375 aaPredicted RBP4.08□□□□□ -1.76
COL12A1-206ENST00000474564 SSPOA2VEC9 5147 aa4.05□□□□□ -1.76
COL12A1-206ENST00000474564 KRTAP23-1A1A580 65 aa4.04□□□□□ -1.76
COL12A1-206ENST00000474564 KRTAP8-1Q8IUC2 63 aa4.02□□□□□ -1.77
COL12A1-206ENST00000474564 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.99□□□□□ -1.77
COL12A1-206ENST00000474564 LCE3AQ5TA76 89 aa3.99□□□□□ -1.77
COL12A1-206ENST00000474564 FCGBPQ9Y6R7 5405 aaPredicted RBP3.96□□□□□ -1.78
COL12A1-206ENST00000474564 KRTAP4-8A0A0G2JLE6 195 aa3.95□□□□□ -1.78
COL12A1-206ENST00000474564 KRTAP4-8Q9BYQ9 185 aa3.95□□□□□ -1.78
COL12A1-206ENST00000474564 KRTAP6-3Q3LI67 103 aa3.9□□□□□ -1.79
COL12A1-206ENST00000474564 SPRR2FQ96RM1 72 aa3.88□□□□□ -1.79
COL12A1-206ENST00000474564 KRTAP12-3P60328 96 aa3.87□□□□□ -1.79
COL12A1-206ENST00000474564 KRTAP19-5Q3LI72 72 aa3.86□□□□□ -1.79
COL12A1-206ENST00000474564 KRTAP9-7A8MTY7 169 aa3.85□□□□□ -1.79
COL12A1-206ENST00000474564 KRTAP5-9P26371 169 aa3.83□□□□□ -1.8
COL12A1-206ENST00000474564 MACF1Q9UPN3 7388 aaKnown RBP3.8□□□□□ -1.8
COL12A1-206ENST00000474564 KRTAP19-7Q3SYF9 63 aa3.79□□□□□ -1.8
COL12A1-206ENST00000474564 MT1EP04732 61 aa3.77□□□□□ -1.81
COL12A1-206ENST00000474564 KRTAP19-4Q3LI73 84 aa3.77□□□□□ -1.81
COL12A1-206ENST00000474564 KRTAP15-1Q3LI76 137 aa3.76□□□□□ -1.81
COL12A1-206ENST00000474564 SPRR2EP22531 72 aa3.73□□□□□ -1.81
COL12A1-206ENST00000474564 SPRR2BP35325 72 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms