RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 LCA10Q71F78 164 aa9.41□□□□□ -0.9
SMARCD3-209ENST00000472988 CHKB-CPT1BH3BT56 60 aa9.39□□□□□ -0.91
SMARCD3-209ENST00000472988 SERP1Q9Y6X1 66 aa9.39□□□□□ -0.91
SMARCD3-209ENST00000472988 FLGP20930 4061 aaPredicted RBP9.37□□□□□ -0.91
SMARCD3-209ENST00000472988 KRTAP3-3Q9BYR6 98 aa9.37□□□□□ -0.91
SMARCD3-209ENST00000472988 FAT4Q6V0I7 4981 aa9.36□□□□□ -0.91
SMARCD3-209ENST00000472988 MT1HP80294 61 aa9.32□□□□□ -0.92
SMARCD3-209ENST00000472988 RPS28P62857 69 aaKnown RBP9.24□□□□□ -0.93
SMARCD3-209ENST00000472988 SPTSSBQ8NFR3 76 aa9.22□□□□□ -0.93
SMARCD3-209ENST00000472988 CSAG1Q6PB30 78 aa9.21□□□□□ -0.93
SMARCD3-209ENST00000472988 M0R2T5 61 aa9.16□□□□□ -0.94
SMARCD3-209ENST00000472988 LCE2AQ5TA79 106 aaPredicted RBP9.11□□□□□ -0.95
SMARCD3-209ENST00000472988 SMIM26A0A096LP01 95 aa9.1□□□□□ -0.95
SMARCD3-209ENST00000472988 LINC01558Q9Y6Z2 57 aa9.01□□□□□ -0.97
SMARCD3-209ENST00000472988 H0YAA0 97 aa9□□□□□ -0.97
SMARCD3-209ENST00000472988 KRTAP10-6P60371 365 aaPredicted RBP9□□□□□ -0.97
SMARCD3-209ENST00000472988 Q1T7F1 81 aa8.99□□□□□ -0.97
SMARCD3-209ENST00000472988 ADM2Q7Z4H4 148 aa8.98□□□□□ -0.97
SMARCD3-209ENST00000472988 KRTAP3-2Q9BYR7 98 aa8.97□□□□□ -0.97
SMARCD3-209ENST00000472988 LORP23490 312 aaPredicted RBP8.96□□□□□ -0.98
SMARCD3-209ENST00000472988 A0A1B0GU69 56 aa8.94□□□□□ -0.98
SMARCD3-209ENST00000472988 V9GYY9 64 aa8.94□□□□□ -0.98
SMARCD3-209ENST00000472988 KRTAP9-8Q9BYQ0 159 aa8.94□□□□□ -0.98
SMARCD3-209ENST00000472988 P0C880 135 aa8.92□□□□□ -0.98
SMARCD3-209ENST00000472988 SEC61GP60059 68 aa8.91□□□□□ -0.98
SMARCD3-209ENST00000472988 MT2AP02795 61 aa8.9□□□□□ -0.98
SMARCD3-209ENST00000472988 PRR15LQ9BU68 103 aa8.9□□□□□ -0.98
SMARCD3-209ENST00000472988 PSPHP1O15172 72 aa8.86□□□□□ -0.99
SMARCD3-209ENST00000472988 MT1FP04733 61 aa8.85□□□□□ -0.99
SMARCD3-209ENST00000472988 Q5VV11 94 aa8.78□□□□□ -1
SMARCD3-209ENST00000472988 KRTAP10-10P60014 251 aa8.78□□□□□ -1
SMARCD3-209ENST00000472988 A0A1B0GU33 70 aa8.73□□□□□ -1.01
SMARCD3-209ENST00000472988 KRTAP13-4Q3LI77 160 aa8.69□□□□□ -1.02
SMARCD3-209ENST00000472988 CRIPTQ9P021 101 aa8.67□□□□□ -1.02
SMARCD3-209ENST00000472988 M0QZ58 72 aa8.65□□□□□ -1.02
SMARCD3-209ENST00000472988 R4GN34 69 aa8.65□□□□□ -1.02
SMARCD3-209ENST00000472988 SPATA8Q6RVD6 105 aa8.64□□□□□ -1.03
SMARCD3-209ENST00000472988 PRO0628Q9UI54 55 aa8.62□□□□□ -1.03
SMARCD3-209ENST00000472988 KRTAP9-3Q9BYQ3 159 aa8.62□□□□□ -1.03
SMARCD3-209ENST00000472988 UQCR11O14957 56 aa8.61□□□□□ -1.03
SMARCD3-209ENST00000472988 KRTAP19-1Q8IUB9 90 aa8.6□□□□□ -1.03
SMARCD3-209ENST00000472988 SPRR2GQ9BYE4 73 aa8.59□□□□□ -1.03
SMARCD3-209ENST00000472988 A6NED7 52 aa8.57□□□□□ -1.04
SMARCD3-209ENST00000472988 MIR22HGQ0VDD5 57 aa8.51□□□□□ -1.05
SMARCD3-209ENST00000472988 LINC01554Q52M75 96 aa8.5□□□□□ -1.05
SMARCD3-209ENST00000472988 A8MU10 97 aa8.49□□□□□ -1.05
SMARCD3-209ENST00000472988 A0A0D9SG42 100 aa8.46□□□□□ -1.05
SMARCD3-209ENST00000472988 LCE2DQ5TA82 110 aaPredicted RBP8.46□□□□□ -1.05
SMARCD3-209ENST00000472988 LCE2BO14633 110 aa8.43□□□□□ -1.06
SMARCD3-209ENST00000472988 KRTAP19-8Q3LI54 63 aa8.4□□□□□ -1.06
SMARCD3-209ENST00000472988 CDC42SE1Q9NRR8 79 aa8.39□□□□□ -1.07
SMARCD3-209ENST00000472988 A6NN06 94 aa8.33□□□□□ -1.08
SMARCD3-209ENST00000472988 MT1BP07438 61 aa8.33□□□□□ -1.08
SMARCD3-209ENST00000472988 KRTAP12-1P59990 96 aa8.32□□□□□ -1.08
SMARCD3-209ENST00000472988 BRK1Q8WUW1 75 aa8.32□□□□□ -1.08
SMARCD3-209ENST00000472988 KRTAP12-2P59991 146 aa8.3□□□□□ -1.08
SMARCD3-209ENST00000472988 SPINT4Q6UDR6 99 aa8.27□□□□□ -1.08
SMARCD3-209ENST00000472988 PLAC4Q8WY50 150 aa8.21□□□□□ -1.1
SMARCD3-209ENST00000472988 USH2AO75445 5202 aa8.19□□□□□ -1.1
SMARCD3-209ENST00000472988 KRTAP9-2Q9BYQ4 174 aa8.14□□□□□ -1.11
SMARCD3-209ENST00000472988 K7ERS5 55 aa8.12□□□□□ -1.11
SMARCD3-209ENST00000472988 PMAIP1Q13794 54 aa8.09□□□□□ -1.11
SMARCD3-209ENST00000472988 CAMK2N1Q7Z7J9 78 aa8.08□□□□□ -1.12
SMARCD3-209ENST00000472988 FSIP2Q5CZC0 6907 aa8.07□□□□□ -1.12
SMARCD3-209ENST00000472988 MT1XP80297 61 aa8.01□□□□□ -1.13
SMARCD3-209ENST00000472988 KRTAP10-5P60370 271 aa7.98□□□□□ -1.13
SMARCD3-209ENST00000472988 SSPOA2VEC9 5147 aa7.98□□□□□ -1.13
SMARCD3-209ENST00000472988 KRTAP19-6Q3LI70 58 aa7.95□□□□□ -1.14
SMARCD3-209ENST00000472988 C10orf95Q9H7T3 257 aa7.89□□□□□ -1.15
SMARCD3-209ENST00000472988 PRO2289Q9P1D8 64 aa7.89□□□□□ -1.15
SMARCD3-209ENST00000472988 KTN1-AS1Q86SY8 53 aa7.86□□□□□ -1.15
SMARCD3-209ENST00000472988 CRCT1Q9UGL9 99 aa7.8□□□□□ -1.16
SMARCD3-209ENST00000472988 ROMO1P60602 79 aa7.79□□□□□ -1.16
SMARCD3-209ENST00000472988 KRTAP10-7P60409 375 aaPredicted RBP7.67□□□□□ -1.18
SMARCD3-209ENST00000472988 FCGBPQ9Y6R7 5405 aaPredicted RBP7.67□□□□□ -1.18
SMARCD3-209ENST00000472988 TNP1P09430 55 aa7.65□□□□□ -1.18
SMARCD3-209ENST00000472988 KRTAP9-6A0A140TA67 174 aa7.61□□□□□ -1.19
SMARCD3-209ENST00000472988 KRTAP25-1Q3LHN0 102 aa7.6□□□□□ -1.19
SMARCD3-209ENST00000472988 KRTAP10-12P60413 245 aa7.58□□□□□ -1.2
SMARCD3-209ENST00000472988 KRTAP4-8A0A0G2JLE6 195 aa7.43□□□□□ -1.22
SMARCD3-209ENST00000472988 KRTAP4-8Q9BYQ9 185 aa7.43□□□□□ -1.22
SMARCD3-209ENST00000472988 MACF1Q9UPN3 7388 aaKnown RBP7.42□□□□□ -1.22
SMARCD3-209ENST00000472988 LCE3AQ5TA76 89 aa7.41□□□□□ -1.22
SMARCD3-209ENST00000472988 PRAC1Q96KF2 57 aa7.41□□□□□ -1.22
SMARCD3-209ENST00000472988 KMT2DO14686 5537 aa7.38□□□□□ -1.23
SMARCD3-209ENST00000472988 KRTAP23-1A1A580 65 aa7.33□□□□□ -1.24
SMARCD3-209ENST00000472988 PP632Q6XCG6 107 aa7.28□□□□□ -1.24
SMARCD3-209ENST00000472988 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.25□□□□□ -1.25
SMARCD3-209ENST00000472988 KRTAP8-1Q8IUC2 63 aa7.25□□□□□ -1.25
SMARCD3-209ENST00000472988 SYNE2Q8WXH0 6885 aaKnown RBP7.21□□□□□ -1.26
SMARCD3-209ENST00000472988 KRTAP19-5Q3LI72 72 aa7.17□□□□□ -1.26
SMARCD3-209ENST00000472988 KRTAP19-7Q3SYF9 63 aa7.15□□□□□ -1.27
SMARCD3-209ENST00000472988 KRTAP12-3P60328 96 aa7.1□□□□□ -1.27
SMARCD3-209ENST00000472988 H3BS24 57 aa7.07□□□□□ -1.28
SMARCD3-209ENST00000472988 KRTAP5-9P26371 169 aa7.04□□□□□ -1.28
SMARCD3-209ENST00000472988 MT1EP04732 61 aa7.03□□□□□ -1.28
SMARCD3-209ENST00000472988 SPRR2FQ96RM1 72 aa7.03□□□□□ -1.28
SMARCD3-209ENST00000472988 KRTAP6-3Q3LI67 103 aa7□□□□□ -1.29
SMARCD3-209ENST00000472988 KRTAP9-7A8MTY7 169 aa6.93□□□□□ -1.3
SMARCD3-209ENST00000472988 KRTAP15-1Q3LI76 137 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 176.2 ms