RNA–Protein interactions for RNA: ENST00000471658.5

PSPC1-203, Transcript of paraspeckle component 1, humanhuman

TSL 1 (best)

Gene PSPC1, Length 1,647 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-203ENST00000471658 LCA10Q71F78 164 aa9.32□□□□□ -0.92
PSPC1-203ENST00000471658 ACYP2P14621 99 aa9.29□□□□□ -0.92
PSPC1-203ENST00000471658 KRTAP3-3Q9BYR6 98 aa9.28□□□□□ -0.92
PSPC1-203ENST00000471658 KRTAP10-6P60371 365 aaPredicted RBP9.19□□□□□ -0.94
PSPC1-203ENST00000471658 TMEM258P61165 79 aa9.16□□□□□ -0.94
PSPC1-203ENST00000471658 CSAG1Q6PB30 78 aa9.16□□□□□ -0.94
PSPC1-203ENST00000471658 COA5Q86WW8 74 aa9.16□□□□□ -0.94
PSPC1-203ENST00000471658 LORP23490 312 aaPredicted RBP9.14□□□□□ -0.95
PSPC1-203ENST00000471658 CHKB-CPT1BH3BT56 60 aa9.13□□□□□ -0.95
PSPC1-203ENST00000471658 ATP5EP56381 51 aaPredicted RBP9.11□□□□□ -0.95
PSPC1-203ENST00000471658 KRTAP9-8Q9BYQ0 159 aa9.08□□□□□ -0.96
PSPC1-203ENST00000471658 MT2AP02795 61 aa9.02□□□□□ -0.97
PSPC1-203ENST00000471658 SPTSSBQ8NFR3 76 aa8.99□□□□□ -0.97
PSPC1-203ENST00000471658 MT1FP04733 61 aa8.96□□□□□ -0.98
PSPC1-203ENST00000471658 KRTAP10-10P60014 251 aa8.91□□□□□ -0.98
PSPC1-203ENST00000471658 SERP1Q9Y6X1 66 aa8.91□□□□□ -0.98
PSPC1-203ENST00000471658 ADM2Q7Z4H4 148 aa8.9□□□□□ -0.99
PSPC1-203ENST00000471658 H0YAA0 97 aa8.88□□□□□ -0.99
PSPC1-203ENST00000471658 KRTAP3-2Q9BYR7 98 aa8.86□□□□□ -0.99
PSPC1-203ENST00000471658 P0C880 135 aa8.82□□□□□ -1
PSPC1-203ENST00000471658 KRTAP9-3Q9BYQ3 159 aa8.76□□□□□ -1.01
PSPC1-203ENST00000471658 RPS28P62857 69 aaKnown RBP8.69□□□□□ -1.02
PSPC1-203ENST00000471658 SEC61GP60059 68 aa8.67□□□□□ -1.02
PSPC1-203ENST00000471658 LINC01558Q9Y6Z2 57 aa8.66□□□□□ -1.02
PSPC1-203ENST00000471658 KRTAP19-1Q8IUB9 90 aa8.65□□□□□ -1.02
PSPC1-203ENST00000471658 A0A1B0GU69 56 aa8.65□□□□□ -1.03
PSPC1-203ENST00000471658 LCE2DQ5TA82 110 aaPredicted RBP8.65□□□□□ -1.03
PSPC1-203ENST00000471658 CRIPTQ9P021 101 aa8.62□□□□□ -1.03
PSPC1-203ENST00000471658 SMIM26A0A096LP01 95 aa8.61□□□□□ -1.03
PSPC1-203ENST00000471658 LCE2BO14633 110 aa8.61□□□□□ -1.03
PSPC1-203ENST00000471658 SPRR2GQ9BYE4 73 aa8.6□□□□□ -1.03
PSPC1-203ENST00000471658 R4GN34 69 aa8.58□□□□□ -1.04
PSPC1-203ENST00000471658 M0QZ58 72 aa8.57□□□□□ -1.04
PSPC1-203ENST00000471658 KRTAP9-2Q9BYQ4 174 aa8.54□□□□□ -1.04
PSPC1-203ENST00000471658 Q1T7F1 81 aa8.54□□□□□ -1.04
PSPC1-203ENST00000471658 USH2AO75445 5202 aa8.54□□□□□ -1.04
PSPC1-203ENST00000471658 KRTAP13-4Q3LI77 160 aa8.53□□□□□ -1.04
PSPC1-203ENST00000471658 PRR15LQ9BU68 103 aa8.52□□□□□ -1.05
PSPC1-203ENST00000471658 A0A1B0GU33 70 aa8.51□□□□□ -1.05
PSPC1-203ENST00000471658 V9GYY9 64 aa8.49□□□□□ -1.05
PSPC1-203ENST00000471658 PSPHP1O15172 72 aa8.47□□□□□ -1.05
PSPC1-203ENST00000471658 KRTAP19-8Q3LI54 63 aa8.44□□□□□ -1.06
PSPC1-203ENST00000471658 LINC01554Q52M75 96 aa8.44□□□□□ -1.06
PSPC1-203ENST00000471658 SPATA8Q6RVD6 105 aa8.44□□□□□ -1.06
PSPC1-203ENST00000471658 FSIP2Q5CZC0 6907 aa8.4□□□□□ -1.06
PSPC1-203ENST00000471658 MT1BP07438 61 aa8.4□□□□□ -1.07
PSPC1-203ENST00000471658 Q5VV11 94 aa8.37□□□□□ -1.07
PSPC1-203ENST00000471658 SSPOA2VEC9 5147 aa8.34□□□□□ -1.07
PSPC1-203ENST00000471658 A0A0D9SG42 100 aa8.32□□□□□ -1.08
PSPC1-203ENST00000471658 SVIPQ8NHG7 77 aa8.32□□□□□ -1.08
PSPC1-203ENST00000471658 A8MU10 97 aa8.29□□□□□ -1.08
PSPC1-203ENST00000471658 UQCR11O14957 56 aa8.29□□□□□ -1.08
PSPC1-203ENST00000471658 PLAC4Q8WY50 150 aa8.21□□□□□ -1.09
PSPC1-203ENST00000471658 A6NN06 94 aa8.2□□□□□ -1.1
PSPC1-203ENST00000471658 MIR22HGQ0VDD5 57 aa8.19□□□□□ -1.1
PSPC1-203ENST00000471658 CRCT1Q9UGL9 99 aa8.18□□□□□ -1.1
PSPC1-203ENST00000471658 A6NED7 52 aa8.17□□□□□ -1.1
PSPC1-203ENST00000471658 KRTAP12-1P59990 96 aa8.14□□□□□ -1.11
PSPC1-203ENST00000471658 SPINT4Q6UDR6 99 aa8.14□□□□□ -1.11
PSPC1-203ENST00000471658 KRTAP19-6Q3LI70 58 aa8.13□□□□□ -1.11
PSPC1-203ENST00000471658 KRTAP12-2P59991 146 aa8.12□□□□□ -1.11
PSPC1-203ENST00000471658 KRTAP10-5P60370 271 aa8.03□□□□□ -1.12
PSPC1-203ENST00000471658 MT1XP80297 61 aa8.03□□□□□ -1.12
PSPC1-203ENST00000471658 KRTAP9-6A0A140TA67 174 aa8.02□□□□□ -1.13
PSPC1-203ENST00000471658 FCGBPQ9Y6R7 5405 aaPredicted RBP8.02□□□□□ -1.13
PSPC1-203ENST00000471658 CAMK2N1Q7Z7J9 78 aa7.99□□□□□ -1.13
PSPC1-203ENST00000471658 CDC42SE1Q9NRR8 79 aa7.95□□□□□ -1.14
PSPC1-203ENST00000471658 PRO2289Q9P1D8 64 aa7.91□□□□□ -1.14
PSPC1-203ENST00000471658 K7ERS5 55 aa7.83□□□□□ -1.16
PSPC1-203ENST00000471658 BRK1Q8WUW1 75 aa7.79□□□□□ -1.16
PSPC1-203ENST00000471658 C10orf95Q9H7T3 257 aa7.75□□□□□ -1.17
PSPC1-203ENST00000471658 KRTAP10-7P60409 375 aaPredicted RBP7.71□□□□□ -1.17
PSPC1-203ENST00000471658 MACF1Q9UPN3 7388 aaKnown RBP7.67□□□□□ -1.18
PSPC1-203ENST00000471658 KRTAP10-12P60413 245 aa7.6□□□□□ -1.19
PSPC1-203ENST00000471658 KMT2DO14686 5537 aa7.59□□□□□ -1.19
PSPC1-203ENST00000471658 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.59□□□□□ -1.19
PSPC1-203ENST00000471658 KRTAP4-8A0A0G2JLE6 195 aa7.53□□□□□ -1.2
PSPC1-203ENST00000471658 KRTAP4-8Q9BYQ9 185 aa7.53□□□□□ -1.2
PSPC1-203ENST00000471658 TNP1P09430 55 aa7.52□□□□□ -1.2
PSPC1-203ENST00000471658 ROMO1P60602 79 aa7.49□□□□□ -1.21
PSPC1-203ENST00000471658 SYNE2Q8WXH0 6885 aaKnown RBP7.49□□□□□ -1.21
PSPC1-203ENST00000471658 KRTAP25-1Q3LHN0 102 aa7.41□□□□□ -1.22
PSPC1-203ENST00000471658 PRO0628Q9UI54 55 aa7.38□□□□□ -1.23
PSPC1-203ENST00000471658 KRTAP8-1Q8IUC2 63 aa7.37□□□□□ -1.23
PSPC1-203ENST00000471658 PMAIP1Q13794 54 aa7.34□□□□□ -1.23
PSPC1-203ENST00000471658 LCE3AQ5TA76 89 aa7.34□□□□□ -1.23
PSPC1-203ENST00000471658 KRTAP9-7A8MTY7 169 aa7.29□□□□□ -1.24
PSPC1-203ENST00000471658 KRTAP6-3Q3LI67 103 aa7.28□□□□□ -1.24
PSPC1-203ENST00000471658 KRTAP5-9P26371 169 aa7.21□□□□□ -1.26
PSPC1-203ENST00000471658 SPRR2FQ96RM1 72 aa7.19□□□□□ -1.26
PSPC1-203ENST00000471658 KRTAP19-5Q3LI72 72 aa7.17□□□□□ -1.26
PSPC1-203ENST00000471658 KRTAP19-7Q3SYF9 63 aa7.17□□□□□ -1.26
PSPC1-203ENST00000471658 MUC12Q9UKN1 5478 aa7.15□□□□□ -1.27
PSPC1-203ENST00000471658 KRTAP23-1A1A580 65 aa7.12□□□□□ -1.27
PSPC1-203ENST00000471658 MT1EP04732 61 aa7.06□□□□□ -1.28
PSPC1-203ENST00000471658 MDN1Q9NU22 5596 aa7.04□□□□□ -1.28
PSPC1-203ENST00000471658 KRTAP12-3P60328 96 aa7.02□□□□□ -1.29
PSPC1-203ENST00000471658 PP632Q6XCG6 107 aa7.02□□□□□ -1.29
PSPC1-203ENST00000471658 PRAC1Q96KF2 57 aa6.99□□□□□ -1.29
PSPC1-203ENST00000471658 LCE1AQ5T7P2 110 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms