RNA–Protein interactions for RNA: ENST00000471250.5

U2AF1-208, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 2

Gene U2AF1, Length 1,676 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-208ENST00000471250 LINC01558Q9Y6Z2 57 aa12.99□□□□□ -0.33
U2AF1-208ENST00000471250 S4R3F8 94 aa12.93□□□□□ -0.34
U2AF1-208ENST00000471250 LCE2DQ5TA82 110 aaPredicted RBP12.93□□□□□ -0.34
U2AF1-208ENST00000471250 LCA10Q71F78 164 aa12.9□□□□□ -0.34
U2AF1-208ENST00000471250 KRTAP3-3Q9BYR6 98 aa12.88□□□□□ -0.35
U2AF1-208ENST00000471250 PSPHP1O15172 72 aa12.85□□□□□ -0.35
U2AF1-208ENST00000471250 PRR15LQ9BU68 103 aa12.84□□□□□ -0.35
U2AF1-208ENST00000471250 KRTAP19-2Q3LHN2 52 aa12.83□□□□□ -0.36
U2AF1-208ENST00000471250 Q5VV11 94 aa12.76□□□□□ -0.37
U2AF1-208ENST00000471250 A0A1B0GU69 56 aa12.73□□□□□ -0.37
U2AF1-208ENST00000471250 SEC61GP60059 68 aa12.64□□□□□ -0.39
U2AF1-208ENST00000471250 CSAG1Q6PB30 78 aa12.63□□□□□ -0.39
U2AF1-208ENST00000471250 MUC2Q02817 5179 aa12.61□□□□□ -0.39
U2AF1-208ENST00000471250 RNF213Q63HN8 5207 aa12.56□□□□□ -0.4
U2AF1-208ENST00000471250 UBR4Q5T4S7 5183 aa12.55□□□□□ -0.4
U2AF1-208ENST00000471250 LCE2CQ5TA81 110 aa12.5□□□□□ -0.41
U2AF1-208ENST00000471250 A6NED7 52 aa12.45□□□□□ -0.42
U2AF1-208ENST00000471250 KRTAP3-2Q9BYR7 98 aa12.44□□□□□ -0.42
U2AF1-208ENST00000471250 FLGP20930 4061 aaPredicted RBP12.43□□□□□ -0.42
U2AF1-208ENST00000471250 KRTAP10-6P60371 365 aaPredicted RBP12.42□□□□□ -0.42
U2AF1-208ENST00000471250 H0YAA0 97 aa12.38□□□□□ -0.43
U2AF1-208ENST00000471250 UQCR11O14957 56 aa12.36□□□□□ -0.43
U2AF1-208ENST00000471250 ADM2Q7Z4H4 148 aa12.36□□□□□ -0.43
U2AF1-208ENST00000471250 A0A1B0GU33 70 aa12.35□□□□□ -0.43
U2AF1-208ENST00000471250 BRK1Q8WUW1 75 aa12.35□□□□□ -0.43
U2AF1-208ENST00000471250 P0C880 135 aa12.31□□□□□ -0.44
U2AF1-208ENST00000471250 CDC42SE1Q9NRR8 79 aa12.26□□□□□ -0.45
U2AF1-208ENST00000471250 MT1HP80294 61 aa12.23□□□□□ -0.45
U2AF1-208ENST00000471250 MIR22HGQ0VDD5 57 aa12.23□□□□□ -0.45
U2AF1-208ENST00000471250 SPATA8Q6RVD6 105 aa12.23□□□□□ -0.45
U2AF1-208ENST00000471250 A8MU10 97 aa12.2□□□□□ -0.46
U2AF1-208ENST00000471250 FAT4Q6V0I7 4981 aa12.15□□□□□ -0.46
U2AF1-208ENST00000471250 PRO0628Q9UI54 55 aa12.11□□□□□ -0.47
U2AF1-208ENST00000471250 M0R2T5 61 aa12.1□□□□□ -0.47
U2AF1-208ENST00000471250 KRTAP13-4Q3LI77 160 aa12.08□□□□□ -0.48
U2AF1-208ENST00000471250 M0QZ58 72 aa12□□□□□ -0.49
U2AF1-208ENST00000471250 LORP23490 312 aaPredicted RBP11.97□□□□□ -0.49
U2AF1-208ENST00000471250 R4GN34 69 aa11.91□□□□□ -0.5
U2AF1-208ENST00000471250 A0A0D9SG42 100 aa11.84□□□□□ -0.51
U2AF1-208ENST00000471250 CRIPTQ9P021 101 aa11.81□□□□□ -0.52
U2AF1-208ENST00000471250 KRTAP9-8Q9BYQ0 159 aa11.8□□□□□ -0.52
U2AF1-208ENST00000471250 MT2AP02795 61 aa11.77□□□□□ -0.53
U2AF1-208ENST00000471250 LCE2AQ5TA79 106 aaPredicted RBP11.71□□□□□ -0.53
U2AF1-208ENST00000471250 MT1FP04733 61 aa11.7□□□□□ -0.54
U2AF1-208ENST00000471250 PMAIP1Q13794 54 aa11.68□□□□□ -0.54
U2AF1-208ENST00000471250 LINC01554Q52M75 96 aa11.68□□□□□ -0.54
U2AF1-208ENST00000471250 KRTAP10-10P60014 251 aa11.66□□□□□ -0.54
U2AF1-208ENST00000471250 K7ERS5 55 aa11.65□□□□□ -0.54
U2AF1-208ENST00000471250 A6NN06 94 aa11.63□□□□□ -0.55
U2AF1-208ENST00000471250 KRTAP12-1P59990 96 aa11.62□□□□□ -0.55
U2AF1-208ENST00000471250 KRTAP12-2P59991 146 aa11.59□□□□□ -0.55
U2AF1-208ENST00000471250 SPINT4Q6UDR6 99 aa11.57□□□□□ -0.56
U2AF1-208ENST00000471250 SPRR2GQ9BYE4 73 aa11.56□□□□□ -0.56
U2AF1-208ENST00000471250 KRTAP19-1Q8IUB9 90 aa11.52□□□□□ -0.56
U2AF1-208ENST00000471250 KRTAP9-3Q9BYQ3 159 aa11.37□□□□□ -0.59
U2AF1-208ENST00000471250 KRTAP19-8Q3LI54 63 aa11.27□□□□□ -0.61
U2AF1-208ENST00000471250 KTN1-AS1Q86SY8 53 aa11.21□□□□□ -0.61
U2AF1-208ENST00000471250 ROMO1P60602 79 aa11.2□□□□□ -0.62
U2AF1-208ENST00000471250 PLAC4Q8WY50 150 aa11.18□□□□□ -0.62
U2AF1-208ENST00000471250 SVIPQ8NHG7 77 aa11.17□□□□□ -0.62
U2AF1-208ENST00000471250 CAMK2N1Q7Z7J9 78 aa11.15□□□□□ -0.62
U2AF1-208ENST00000471250 MT1BP07438 61 aa11.1□□□□□ -0.63
U2AF1-208ENST00000471250 LCE2BO14633 110 aa11.04□□□□□ -0.64
U2AF1-208ENST00000471250 C10orf95Q9H7T3 257 aa11.01□□□□□ -0.65
U2AF1-208ENST00000471250 PRAC1Q96KF2 57 aa10.95□□□□□ -0.66
U2AF1-208ENST00000471250 MT1XP80297 61 aa10.75□□□□□ -0.69
U2AF1-208ENST00000471250 KRTAP10-5P60370 271 aa10.73□□□□□ -0.69
U2AF1-208ENST00000471250 KRTAP25-1Q3LHN0 102 aa10.71□□□□□ -0.69
U2AF1-208ENST00000471250 USH2AO75445 5202 aa10.67□□□□□ -0.7
U2AF1-208ENST00000471250 TNP1P09430 55 aa10.64□□□□□ -0.71
U2AF1-208ENST00000471250 PRO2289Q9P1D8 64 aa10.6□□□□□ -0.71
U2AF1-208ENST00000471250 KRTAP23-1A1A580 65 aa10.36□□□□□ -0.75
U2AF1-208ENST00000471250 PP632Q6XCG6 107 aa10.36□□□□□ -0.75
U2AF1-208ENST00000471250 KRTAP19-6Q3LI70 58 aa10.35□□□□□ -0.75
U2AF1-208ENST00000471250 SSPOA2VEC9 5147 aa10.32□□□□□ -0.76
U2AF1-208ENST00000471250 KRTAP10-7P60409 375 aaPredicted RBP10.31□□□□□ -0.76
U2AF1-208ENST00000471250 KRTAP10-12P60413 245 aa10.2□□□□□ -0.78
U2AF1-208ENST00000471250 LCE3AQ5TA76 89 aa10.18□□□□□ -0.78
U2AF1-208ENST00000471250 KRTAP9-2Q9BYQ4 174 aa10.15□□□□□ -0.79
U2AF1-208ENST00000471250 FSIP2Q5CZC0 6907 aa10.09□□□□□ -0.79
U2AF1-208ENST00000471250 KRTAP8-1Q8IUC2 63 aa9.99□□□□□ -0.81
U2AF1-208ENST00000471250 KRTAP4-8A0A0G2JLE6 195 aa9.89□□□□□ -0.83
U2AF1-208ENST00000471250 KRTAP4-8Q9BYQ9 185 aa9.89□□□□□ -0.83
U2AF1-208ENST00000471250 FCGBPQ9Y6R7 5405 aaPredicted RBP9.85□□□□□ -0.83
U2AF1-208ENST00000471250 CRCT1Q9UGL9 99 aa9.81□□□□□ -0.84
U2AF1-208ENST00000471250 KRTAP12-3P60328 96 aa9.77□□□□□ -0.84
U2AF1-208ENST00000471250 KMT2DO14686 5537 aa9.74□□□□□ -0.85
U2AF1-208ENST00000471250 KRTAP19-5Q3LI72 72 aa9.72□□□□□ -0.85
U2AF1-208ENST00000471250 LOC100996750A0A140TA64 210 aa9.64□□□□□ -0.87
U2AF1-208ENST00000471250 KRTAP4-6Q9BYQ5 205 aa9.64□□□□□ -0.87
U2AF1-208ENST00000471250 KRTAP15-1Q3LI76 137 aa9.61□□□□□ -0.87
U2AF1-208ENST00000471250 KRTAP19-7Q3SYF9 63 aa9.59□□□□□ -0.87
U2AF1-208ENST00000471250 MT1EP04732 61 aa9.42□□□□□ -0.9
U2AF1-208ENST00000471250 MACF1Q9UPN3 7388 aaKnown RBP9.34□□□□□ -0.91
U2AF1-208ENST00000471250 KRTAP9-6A0A140TA67 174 aa9.32□□□□□ -0.92
U2AF1-208ENST00000471250 MT1LQ93083 61 aa9.24□□□□□ -0.93
U2AF1-208ENST00000471250 SPRR5A0A1B0GTR4 108 aa9.22□□□□□ -0.93
U2AF1-208ENST00000471250 KRTAP19-4Q3LI73 84 aa9.17□□□□□ -0.94
U2AF1-208ENST00000471250 SPRR2FQ96RM1 72 aa9.17□□□□□ -0.94
U2AF1-208ENST00000471250 LCE3CQ5T5A8 94 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms