RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 PRR15LQ9BU68 103 aa9.11□□□□□ -0.95
SMC4-211ENST00000469858 SPTSSBQ8NFR3 76 aa9.1□□□□□ -0.95
SMC4-211ENST00000469858 H1FX-AS1Q4G0G2 97 aa9.09□□□□□ -0.95
SMC4-211ENST00000469858 S4R3F8 94 aa9.07□□□□□ -0.96
SMC4-211ENST00000469858 LCA10Q71F78 164 aa9.06□□□□□ -0.96
SMC4-211ENST00000469858 Q5VV11 94 aa9.03□□□□□ -0.96
SMC4-211ENST00000469858 KRTAP3-3Q9BYR6 98 aa9.01□□□□□ -0.97
SMC4-211ENST00000469858 A0A1B0GU69 56 aa9□□□□□ -0.97
SMC4-211ENST00000469858 MUC2Q02817 5179 aa8.93□□□□□ -0.98
SMC4-211ENST00000469858 SEC61GP60059 68 aa8.91□□□□□ -0.98
SMC4-211ENST00000469858 KRTAP19-2Q3LHN2 52 aa8.9□□□□□ -0.98
SMC4-211ENST00000469858 A6NED7 52 aa8.85□□□□□ -0.99
SMC4-211ENST00000469858 CSAG1Q6PB30 78 aa8.84□□□□□ -0.99
SMC4-211ENST00000469858 BRK1Q8WUW1 75 aa8.82□□□□□ -1
SMC4-211ENST00000469858 UBR4Q5T4S7 5183 aa8.81□□□□□ -1
SMC4-211ENST00000469858 SVIPQ8NHG7 77 aa8.77□□□□□ -1
SMC4-211ENST00000469858 RNF213Q63HN8 5207 aa8.76□□□□□ -1.01
SMC4-211ENST00000469858 UQCR11O14957 56 aa8.72□□□□□ -1.01
SMC4-211ENST00000469858 A8MU10 97 aa8.71□□□□□ -1.02
SMC4-211ENST00000469858 KRTAP10-6P60371 365 aaPredicted RBP8.71□□□□□ -1.02
SMC4-211ENST00000469858 KRTAP3-2Q9BYR7 98 aa8.7□□□□□ -1.02
SMC4-211ENST00000469858 A0A1B0GU33 70 aa8.69□□□□□ -1.02
SMC4-211ENST00000469858 ADM2Q7Z4H4 148 aa8.69□□□□□ -1.02
SMC4-211ENST00000469858 CDC42SE1Q9NRR8 79 aa8.68□□□□□ -1.02
SMC4-211ENST00000469858 FLGP20930 4061 aaPredicted RBP8.67□□□□□ -1.02
SMC4-211ENST00000469858 LCE2CQ5TA81 110 aa8.67□□□□□ -1.02
SMC4-211ENST00000469858 P0C880 135 aa8.66□□□□□ -1.02
SMC4-211ENST00000469858 MIR22HGQ0VDD5 57 aa8.64□□□□□ -1.03
SMC4-211ENST00000469858 PRO0628Q9UI54 55 aa8.62□□□□□ -1.03
SMC4-211ENST00000469858 H0YAA0 97 aa8.61□□□□□ -1.03
SMC4-211ENST00000469858 SPATA8Q6RVD6 105 aa8.61□□□□□ -1.03
SMC4-211ENST00000469858 FAT4Q6V0I7 4981 aa8.56□□□□□ -1.04
SMC4-211ENST00000469858 MT1HP80294 61 aa8.51□□□□□ -1.05
SMC4-211ENST00000469858 KRTAP13-4Q3LI77 160 aa8.51□□□□□ -1.05
SMC4-211ENST00000469858 M0R2T5 61 aa8.47□□□□□ -1.05
SMC4-211ENST00000469858 M0QZ58 72 aa8.39□□□□□ -1.07
SMC4-211ENST00000469858 LORP23490 312 aaPredicted RBP8.39□□□□□ -1.07
SMC4-211ENST00000469858 A0A0D9SG42 100 aa8.39□□□□□ -1.07
SMC4-211ENST00000469858 R4GN34 69 aa8.37□□□□□ -1.07
SMC4-211ENST00000469858 PMAIP1Q13794 54 aa8.33□□□□□ -1.08
SMC4-211ENST00000469858 LINC01554Q52M75 96 aa8.26□□□□□ -1.09
SMC4-211ENST00000469858 A6NN06 94 aa8.24□□□□□ -1.09
SMC4-211ENST00000469858 K7ERS5 55 aa8.22□□□□□ -1.09
SMC4-211ENST00000469858 CRIPTQ9P021 101 aa8.21□□□□□ -1.1
SMC4-211ENST00000469858 KRTAP9-8Q9BYQ0 159 aa8.19□□□□□ -1.1
SMC4-211ENST00000469858 MT2AP02795 61 aa8.19□□□□□ -1.1
SMC4-211ENST00000469858 KRTAP12-1P59990 96 aa8.17□□□□□ -1.1
SMC4-211ENST00000469858 KRTAP12-2P59991 146 aa8.17□□□□□ -1.1
SMC4-211ENST00000469858 SPINT4Q6UDR6 99 aa8.17□□□□□ -1.1
SMC4-211ENST00000469858 MT1FP04733 61 aa8.15□□□□□ -1.1
SMC4-211ENST00000469858 KRTAP10-10P60014 251 aa8.14□□□□□ -1.11
SMC4-211ENST00000469858 LCE2AQ5TA79 106 aaPredicted RBP8.08□□□□□ -1.12
SMC4-211ENST00000469858 SPRR2GQ9BYE4 73 aa8.04□□□□□ -1.12
SMC4-211ENST00000469858 KRTAP19-1Q8IUB9 90 aa8.03□□□□□ -1.12
SMC4-211ENST00000469858 KTN1-AS1Q86SY8 53 aa7.99□□□□□ -1.13
SMC4-211ENST00000469858 ROMO1P60602 79 aa7.9□□□□□ -1.14
SMC4-211ENST00000469858 KRTAP9-3Q9BYQ3 159 aa7.89□□□□□ -1.15
SMC4-211ENST00000469858 CAMK2N1Q7Z7J9 78 aa7.86□□□□□ -1.15
SMC4-211ENST00000469858 PRAC1Q96KF2 57 aa7.82□□□□□ -1.16
SMC4-211ENST00000469858 PLAC4Q8WY50 150 aa7.82□□□□□ -1.16
SMC4-211ENST00000469858 KRTAP19-8Q3LI54 63 aa7.8□□□□□ -1.16
SMC4-211ENST00000469858 C10orf95Q9H7T3 257 aa7.73□□□□□ -1.17
SMC4-211ENST00000469858 MT1BP07438 61 aa7.73□□□□□ -1.17
SMC4-211ENST00000469858 LCE2BO14633 110 aa7.68□□□□□ -1.18
SMC4-211ENST00000469858 KRTAP25-1Q3LHN0 102 aa7.58□□□□□ -1.2
SMC4-211ENST00000469858 MT1XP80297 61 aa7.5□□□□□ -1.21
SMC4-211ENST00000469858 KRTAP10-5P60370 271 aa7.48□□□□□ -1.21
SMC4-211ENST00000469858 TNP1P09430 55 aa7.46□□□□□ -1.21
SMC4-211ENST00000469858 USH2AO75445 5202 aa7.44□□□□□ -1.22
SMC4-211ENST00000469858 PRO2289Q9P1D8 64 aa7.39□□□□□ -1.23
SMC4-211ENST00000469858 LCE2DQ5TA82 110 aaPredicted RBP7.28□□□□□ -1.24
SMC4-211ENST00000469858 PP632Q6XCG6 107 aa7.26□□□□□ -1.25
SMC4-211ENST00000469858 KRTAP10-7P60409 375 aaPredicted RBP7.22□□□□□ -1.25
SMC4-211ENST00000469858 SSPOA2VEC9 5147 aa7.2□□□□□ -1.26
SMC4-211ENST00000469858 KRTAP23-1A1A580 65 aa7.19□□□□□ -1.26
SMC4-211ENST00000469858 FSIP2Q5CZC0 6907 aa7.17□□□□□ -1.26
SMC4-211ENST00000469858 LCE3AQ5TA76 89 aa7.16□□□□□ -1.26
SMC4-211ENST00000469858 KRTAP10-12P60413 245 aa7.15□□□□□ -1.26
SMC4-211ENST00000469858 KRTAP19-6Q3LI70 58 aa7.15□□□□□ -1.27
SMC4-211ENST00000469858 KRTAP9-2Q9BYQ4 174 aa7□□□□□ -1.29
SMC4-211ENST00000469858 KRTAP8-1Q8IUC2 63 aa6.97□□□□□ -1.29
SMC4-211ENST00000469858 KMT2DO14686 5537 aa6.94□□□□□ -1.3
SMC4-211ENST00000469858 KRTAP4-8A0A0G2JLE6 195 aa6.93□□□□□ -1.3
SMC4-211ENST00000469858 KRTAP4-8Q9BYQ9 185 aa6.93□□□□□ -1.3
SMC4-211ENST00000469858 FCGBPQ9Y6R7 5405 aaPredicted RBP6.88□□□□□ -1.31
SMC4-211ENST00000469858 KRTAP12-3P60328 96 aa6.86□□□□□ -1.31
SMC4-211ENST00000469858 KRTAP19-5Q3LI72 72 aa6.8□□□□□ -1.32
SMC4-211ENST00000469858 CRCT1Q9UGL9 99 aa6.76□□□□□ -1.33
SMC4-211ENST00000469858 KRTAP15-1Q3LI76 137 aa6.73□□□□□ -1.33
SMC4-211ENST00000469858 KRTAP19-7Q3SYF9 63 aa6.69□□□□□ -1.34
SMC4-211ENST00000469858 MT1EP04732 61 aa6.56□□□□□ -1.36
SMC4-211ENST00000469858 MACF1Q9UPN3 7388 aaKnown RBP6.55□□□□□ -1.36
SMC4-211ENST00000469858 SPRR5A0A1B0GTR4 108 aa6.46□□□□□ -1.37
SMC4-211ENST00000469858 MT1LQ93083 61 aa6.44□□□□□ -1.38
SMC4-211ENST00000469858 SPRR2FQ96RM1 72 aa6.41□□□□□ -1.38
SMC4-211ENST00000469858 KRTAP9-6A0A140TA67 174 aa6.4□□□□□ -1.38
SMC4-211ENST00000469858 LCE3CQ5T5A8 94 aa6.4□□□□□ -1.38
SMC4-211ENST00000469858 MUC12Q9UKN1 5478 aa6.37□□□□□ -1.39
SMC4-211ENST00000469858 SYNE2Q8WXH0 6885 aaKnown RBP6.36□□□□□ -1.39
SMC4-211ENST00000469858 LUZP6Q538Z0 58 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms