RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 MT2AP02795 61 aa7.05□□□□□ -1.28
COL9A3-209ENST00000469852 KRTAP3-3Q9BYR6 98 aa7.05□□□□□ -1.28
COL9A3-209ENST00000469852 A8MUN3 132 aa7.03□□□□□ -1.28
COL9A3-209ENST00000469852 DMAC1Q96GE9 116 aa7.02□□□□□ -1.29
COL9A3-209ENST00000469852 MT1FP04733 61 aa7.01□□□□□ -1.29
COL9A3-209ENST00000469852 ANAPC13Q9BS18 74 aa7.01□□□□□ -1.29
COL9A3-209ENST00000469852 CYSTM1Q9H1C7 97 aa6.99□□□□□ -1.29
COL9A3-209ENST00000469852 CSAG1Q6PB30 78 aa6.96□□□□□ -1.3
COL9A3-209ENST00000469852 KRTAP10-10P60014 251 aa6.93□□□□□ -1.3
COL9A3-209ENST00000469852 CCDC179H3BU77 68 aa6.92□□□□□ -1.3
COL9A3-209ENST00000469852 SPANXA2-OT1Q8N9U9 137 aa6.92□□□□□ -1.3
COL9A3-209ENST00000469852 NDUFC1O43677 76 aa6.91□□□□□ -1.3
COL9A3-209ENST00000469852 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.9□□□□□ -1.3
COL9A3-209ENST00000469852 USH2AO75445 5202 aa6.89□□□□□ -1.31
COL9A3-209ENST00000469852 KRTAP9-7A8MTY7 169 aa6.89□□□□□ -1.31
COL9A3-209ENST00000469852 H7BZZ5 65 aa6.89□□□□□ -1.31
COL9A3-209ENST00000469852 ACYP2P14621 99 aa6.88□□□□□ -1.31
COL9A3-209ENST00000469852 SSPOA2VEC9 5147 aa6.88□□□□□ -1.31
COL9A3-209ENST00000469852 KRTAP9-3Q9BYQ3 159 aa6.87□□□□□ -1.31
COL9A3-209ENST00000469852 LCE2BO14633 110 aa6.78□□□□□ -1.32
COL9A3-209ENST00000469852 H0YAA0 97 aa6.76□□□□□ -1.33
COL9A3-209ENST00000469852 CHKB-CPT1BH3BT56 60 aa6.76□□□□□ -1.33
COL9A3-209ENST00000469852 FCGBPQ9Y6R7 5405 aaPredicted RBP6.75□□□□□ -1.33
COL9A3-209ENST00000469852 COA5Q86WW8 74 aa6.74□□□□□ -1.33
COL9A3-209ENST00000469852 ADM2Q7Z4H4 148 aa6.73□□□□□ -1.33
COL9A3-209ENST00000469852 KRTAP19-1Q8IUB9 90 aa6.71□□□□□ -1.34
COL9A3-209ENST00000469852 KRTAP3-2Q9BYR7 98 aa6.69□□□□□ -1.34
COL9A3-209ENST00000469852 SPTSSBQ8NFR3 76 aa6.68□□□□□ -1.34
COL9A3-209ENST00000469852 P0C880 135 aa6.67□□□□□ -1.34
COL9A3-209ENST00000469852 SPRR2GQ9BYE4 73 aa6.64□□□□□ -1.35
COL9A3-209ENST00000469852 ATP5EP56381 51 aaPredicted RBP6.6□□□□□ -1.35
COL9A3-209ENST00000469852 TMEM258P61165 79 aa6.6□□□□□ -1.35
COL9A3-209ENST00000469852 CRIPTQ9P021 101 aa6.6□□□□□ -1.35
COL9A3-209ENST00000469852 KRTAP19-8Q3LI54 63 aa6.55□□□□□ -1.36
COL9A3-209ENST00000469852 MT1BP07438 61 aa6.53□□□□□ -1.36
COL9A3-209ENST00000469852 PCP4P48539 62 aa6.53□□□□□ -1.36
COL9A3-209ENST00000469852 SYNE2Q8WXH0 6885 aaKnown RBP6.52□□□□□ -1.37
COL9A3-209ENST00000469852 MACF1Q9UPN3 7388 aaKnown RBP6.51□□□□□ -1.37
COL9A3-209ENST00000469852 R4GN34 69 aa6.5□□□□□ -1.37
COL9A3-209ENST00000469852 M0QZ58 72 aa6.49□□□□□ -1.37
COL9A3-209ENST00000469852 KRTAP19-6Q3LI70 58 aa6.49□□□□□ -1.37
COL9A3-209ENST00000469852 Q5VV11 94 aa6.48□□□□□ -1.37
COL9A3-209ENST00000469852 KRTAP13-4Q3LI77 160 aa6.41□□□□□ -1.38
COL9A3-209ENST00000469852 SERP1Q9Y6X1 66 aa6.4□□□□□ -1.38
COL9A3-209ENST00000469852 SEC61GP60059 68 aa6.39□□□□□ -1.39
COL9A3-209ENST00000469852 LINC01554Q52M75 96 aa6.39□□□□□ -1.39
COL9A3-209ENST00000469852 A0A1B0GU69 56 aa6.35□□□□□ -1.39
COL9A3-209ENST00000469852 KRTAP6-3Q3LI67 103 aa6.35□□□□□ -1.39
COL9A3-209ENST00000469852 LINC01558Q9Y6Z2 57 aa6.32□□□□□ -1.4
COL9A3-209ENST00000469852 A0A1B0GU33 70 aa6.31□□□□□ -1.4
COL9A3-209ENST00000469852 SPATA8Q6RVD6 105 aa6.29□□□□□ -1.4
COL9A3-209ENST00000469852 KRTAP10-5P60370 271 aa6.27□□□□□ -1.41
COL9A3-209ENST00000469852 PLAC4Q8WY50 150 aa6.27□□□□□ -1.41
COL9A3-209ENST00000469852 A6NN06 94 aa6.25□□□□□ -1.41
COL9A3-209ENST00000469852 PRR15LQ9BU68 103 aa6.22□□□□□ -1.41
COL9A3-209ENST00000469852 A0A0D9SG42 100 aa6.21□□□□□ -1.42
COL9A3-209ENST00000469852 MT1XP80297 61 aa6.21□□□□□ -1.42
COL9A3-209ENST00000469852 RPS28P62857 69 aaKnown RBP6.16□□□□□ -1.42
COL9A3-209ENST00000469852 Q1T7F1 81 aa6.16□□□□□ -1.42
COL9A3-209ENST00000469852 NEBP20929 6669 aa6.15□□□□□ -1.42
COL9A3-209ENST00000469852 SMIM26A0A096LP01 95 aa6.15□□□□□ -1.42
COL9A3-209ENST00000469852 A8MU10 97 aa6.15□□□□□ -1.42
COL9A3-209ENST00000469852 PSPHP1O15172 72 aa6.12□□□□□ -1.43
COL9A3-209ENST00000469852 MUC12Q9UKN1 5478 aa6.11□□□□□ -1.43
COL9A3-209ENST00000469852 KRTAP12-1P59990 96 aa6.11□□□□□ -1.43
COL9A3-209ENST00000469852 V9GYY9 64 aa6.11□□□□□ -1.43
COL9A3-209ENST00000469852 PRO2289Q9P1D8 64 aa6.1□□□□□ -1.43
COL9A3-209ENST00000469852 KRTAP12-2P59991 146 aa6.08□□□□□ -1.44
COL9A3-209ENST00000469852 SPINT4Q6UDR6 99 aa6.07□□□□□ -1.44
COL9A3-209ENST00000469852 UQCR11O14957 56 aa6.06□□□□□ -1.44
COL9A3-209ENST00000469852 CAMK2N1Q7Z7J9 78 aa6.03□□□□□ -1.44
COL9A3-209ENST00000469852 KRTAP20-1Q3LI63 56 aa6□□□□□ -1.45
COL9A3-209ENST00000469852 MIR22HGQ0VDD5 57 aa5.98□□□□□ -1.45
COL9A3-209ENST00000469852 KMT2DO14686 5537 aa5.96□□□□□ -1.45
COL9A3-209ENST00000469852 KRTAP5-9P26371 169 aa5.96□□□□□ -1.46
COL9A3-209ENST00000469852 KRTAP10-7P60409 375 aaPredicted RBP5.95□□□□□ -1.46
COL9A3-209ENST00000469852 MDN1Q9NU22 5596 aa5.91□□□□□ -1.46
COL9A3-209ENST00000469852 A6NED7 52 aa5.89□□□□□ -1.47
COL9A3-209ENST00000469852 KRTAP10-12P60413 245 aa5.88□□□□□ -1.47
COL9A3-209ENST00000469852 SVIPQ8NHG7 77 aa5.87□□□□□ -1.47
COL9A3-209ENST00000469852 KRTAP4-8A0A0G2JLE6 195 aa5.85□□□□□ -1.47
COL9A3-209ENST00000469852 KRTAP4-8Q9BYQ9 185 aa5.85□□□□□ -1.47
COL9A3-209ENST00000469852 C10orf95Q9H7T3 257 aa5.82□□□□□ -1.48
COL9A3-209ENST00000469852 KRTAP2-3P0C7H8 128 aa5.77□□□□□ -1.49
COL9A3-209ENST00000469852 KRTAP2-4Q9BYR9 128 aa5.77□□□□□ -1.49
COL9A3-209ENST00000469852 KRTAP8-1Q8IUC2 63 aa5.76□□□□□ -1.49
COL9A3-209ENST00000469852 CDC42SE1Q9NRR8 79 aa5.72□□□□□ -1.49
COL9A3-209ENST00000469852 K7ERS5 55 aa5.71□□□□□ -1.5
COL9A3-209ENST00000469852 SPRR2FQ96RM1 72 aa5.68□□□□□ -1.5
COL9A3-209ENST00000469852 SPRR2EP22531 72 aa5.66□□□□□ -1.5
COL9A3-209ENST00000469852 SPRR2BP35325 72 aa5.66□□□□□ -1.5
COL9A3-209ENST00000469852 SPRR2AP35326 72 aa5.66□□□□□ -1.5
COL9A3-209ENST00000469852 TNP1P09430 55 aa5.64□□□□□ -1.51
COL9A3-209ENST00000469852 LCE1AQ5T7P2 110 aa5.58□□□□□ -1.52
COL9A3-209ENST00000469852 LCE3AQ5TA76 89 aa5.58□□□□□ -1.52
COL9A3-209ENST00000469852 KRTAP2-2Q9BYT5 123 aa5.57□□□□□ -1.52
COL9A3-209ENST00000469852 KRTAP2-1Q9BYU5 128 aa5.57□□□□□ -1.52
COL9A3-209ENST00000469852 KRTAP19-7Q3SYF9 63 aa5.55□□□□□ -1.52
COL9A3-209ENST00000469852 KRTAP25-1Q3LHN0 102 aa5.51□□□□□ -1.53
COL9A3-209ENST00000469852 KRTAP19-5Q3LI72 72 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms