RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 FAM236BA0A1B0GV22 79 aa8.49□□□□□ -1.05
COL7A1-205ENST00000465238 H3BPC8 53 aa8.48□□□□□ -1.05
COL7A1-205ENST00000465238 SMIM20Q8N5G0 67 aa8.46□□□□□ -1.06
COL7A1-205ENST00000465238 S4R3F8 94 aa8.45□□□□□ -1.06
COL7A1-205ENST00000465238 KLKP1Q107X0 134 aa8.43□□□□□ -1.06
COL7A1-205ENST00000465238 TRAV7A0A075B6U4 112 aa8.42□□□□□ -1.06
COL7A1-205ENST00000465238 KRTAP19-6Q3LI70 58 aa8.37□□□□□ -1.07
COL7A1-205ENST00000465238 CSAG1Q6PB30 78 aa8.37□□□□□ -1.07
COL7A1-205ENST00000465238 LCA10Q71F78 164 aa8.37□□□□□ -1.07
COL7A1-205ENST00000465238 MACF1Q9UPN3 7388 aaKnown RBP8.36□□□□□ -1.07
COL7A1-205ENST00000465238 A8MUN3 132 aa8.35□□□□□ -1.07
COL7A1-205ENST00000465238 SYNE2Q8WXH0 6885 aaKnown RBP8.3□□□□□ -1.08
COL7A1-205ENST00000465238 KRTAP3-3Q9BYR6 98 aa8.26□□□□□ -1.09
COL7A1-205ENST00000465238 SERP2Q8N6R1 65 aa8.25□□□□□ -1.09
COL7A1-205ENST00000465238 NDUFC1O43677 76 aa8.24□□□□□ -1.09
COL7A1-205ENST00000465238 DMAC1Q96GE9 116 aa8.21□□□□□ -1.1
COL7A1-205ENST00000465238 SNURFQ9Y675 71 aa8.21□□□□□ -1.1
COL7A1-205ENST00000465238 C20orf197Q8N268 126 aa8.18□□□□□ -1.1
COL7A1-205ENST00000465238 ACYP2P14621 99 aa8.11□□□□□ -1.11
COL7A1-205ENST00000465238 KRTAP6-3Q3LI67 103 aa8.1□□□□□ -1.11
COL7A1-205ENST00000465238 COX7CP15954 63 aa8.09□□□□□ -1.11
COL7A1-205ENST00000465238 SPANXA2-OT1Q8N9U9 137 aa8.05□□□□□ -1.12
COL7A1-205ENST00000465238 H0YAA0 97 aa8.04□□□□□ -1.12
COL7A1-205ENST00000465238 ADM2Q7Z4H4 148 aa7.99□□□□□ -1.13
COL7A1-205ENST00000465238 ANAPC13Q9BS18 74 aa7.99□□□□□ -1.13
COL7A1-205ENST00000465238 CHKB-CPT1BH3BT56 60 aa7.98□□□□□ -1.13
COL7A1-205ENST00000465238 CRIPTQ9P021 101 aa7.98□□□□□ -1.13
COL7A1-205ENST00000465238 SPTSSBQ8NFR3 76 aa7.97□□□□□ -1.13
COL7A1-205ENST00000465238 SPRR2GQ9BYE4 73 aa7.94□□□□□ -1.14
COL7A1-205ENST00000465238 A6NN06 94 aa7.91□□□□□ -1.14
COL7A1-205ENST00000465238 MT1BP07438 61 aa7.89□□□□□ -1.15
COL7A1-205ENST00000465238 Q5VV11 94 aa7.89□□□□□ -1.15
COL7A1-205ENST00000465238 H7BZZ5 65 aa7.87□□□□□ -1.15
COL7A1-205ENST00000465238 KRTAP19-8Q3LI54 63 aa7.86□□□□□ -1.15
COL7A1-205ENST00000465238 CYSTM1Q9H1C7 97 aa7.86□□□□□ -1.15
COL7A1-205ENST00000465238 P0C880 135 aa7.83□□□□□ -1.16
COL7A1-205ENST00000465238 NEBP20929 6669 aa7.83□□□□□ -1.16
COL7A1-205ENST00000465238 CCDC179H3BU77 68 aa7.8□□□□□ -1.16
COL7A1-205ENST00000465238 COA5Q86WW8 74 aa7.8□□□□□ -1.16
COL7A1-205ENST00000465238 KRTAP3-2Q9BYR7 98 aa7.8□□□□□ -1.16
COL7A1-205ENST00000465238 KRTAP10-5P60370 271 aa7.77□□□□□ -1.17
COL7A1-205ENST00000465238 R4GN34 69 aa7.77□□□□□ -1.17
COL7A1-205ENST00000465238 MUC12Q9UKN1 5478 aa7.76□□□□□ -1.17
COL7A1-205ENST00000465238 M0QZ58 72 aa7.72□□□□□ -1.17
COL7A1-205ENST00000465238 KRTAP5-9P26371 169 aa7.64□□□□□ -1.19
COL7A1-205ENST00000465238 ATP5EP56381 51 aaPredicted RBP7.62□□□□□ -1.19
COL7A1-205ENST00000465238 LINC01554Q52M75 96 aa7.61□□□□□ -1.19
COL7A1-205ENST00000465238 SEC61GP60059 68 aa7.6□□□□□ -1.19
COL7A1-205ENST00000465238 PLAC4Q8WY50 150 aa7.6□□□□□ -1.19
COL7A1-205ENST00000465238 KRTAP20-1Q3LI63 56 aa7.59□□□□□ -1.19
COL7A1-205ENST00000465238 KMT2DO14686 5537 aa7.58□□□□□ -1.2
COL7A1-205ENST00000465238 SERP1Q9Y6X1 66 aa7.57□□□□□ -1.2
COL7A1-205ENST00000465238 MDN1Q9NU22 5596 aa7.54□□□□□ -1.2
COL7A1-205ENST00000465238 TMEM258P61165 79 aa7.53□□□□□ -1.2
COL7A1-205ENST00000465238 PRO2289Q9P1D8 64 aa7.44□□□□□ -1.22
COL7A1-205ENST00000465238 A0A1B0GU69 56 aa7.43□□□□□ -1.22
COL7A1-205ENST00000465238 KRTAP13-4Q3LI77 160 aa7.43□□□□□ -1.22
COL7A1-205ENST00000465238 A0A1B0GU33 70 aa7.41□□□□□ -1.22
COL7A1-205ENST00000465238 MT1XP80297 61 aa7.37□□□□□ -1.23
COL7A1-205ENST00000465238 KRTAP2-3P0C7H8 128 aa7.35□□□□□ -1.23
COL7A1-205ENST00000465238 SPRR2FQ96RM1 72 aa7.35□□□□□ -1.23
COL7A1-205ENST00000465238 KRTAP2-4Q9BYR9 128 aa7.35□□□□□ -1.23
COL7A1-205ENST00000465238 SPATA8Q6RVD6 105 aa7.33□□□□□ -1.24
COL7A1-205ENST00000465238 PRR15LQ9BU68 103 aa7.32□□□□□ -1.24
COL7A1-205ENST00000465238 A0A0D9SG42 100 aa7.29□□□□□ -1.24
COL7A1-205ENST00000465238 SPRR2EP22531 72 aa7.29□□□□□ -1.24
COL7A1-205ENST00000465238 SPRR2BP35325 72 aa7.29□□□□□ -1.24
COL7A1-205ENST00000465238 SPRR2AP35326 72 aa7.29□□□□□ -1.24
COL7A1-205ENST00000465238 LINC01558Q9Y6Z2 57 aa7.29□□□□□ -1.24
COL7A1-205ENST00000465238 KRTAP8-1Q8IUC2 63 aa7.26□□□□□ -1.25
COL7A1-205ENST00000465238 KRTAP12-2P59991 146 aa7.24□□□□□ -1.25
COL7A1-205ENST00000465238 PCP4P48539 62 aa7.22□□□□□ -1.25
COL7A1-205ENST00000465238 CAMK2N1Q7Z7J9 78 aa7.22□□□□□ -1.25
COL7A1-205ENST00000465238 SMIM26A0A096LP01 95 aa7.21□□□□□ -1.26
COL7A1-205ENST00000465238 SPINT4Q6UDR6 99 aa7.18□□□□□ -1.26
COL7A1-205ENST00000465238 LCE1AQ5T7P2 110 aa7.17□□□□□ -1.26
COL7A1-205ENST00000465238 A8MU10 97 aa7.11□□□□□ -1.27
COL7A1-205ENST00000465238 KRTAP12-1P59990 96 aa7.11□□□□□ -1.27
COL7A1-205ENST00000465238 KRTAP2-2Q9BYT5 123 aa7.1□□□□□ -1.27
COL7A1-205ENST00000465238 KRTAP2-1Q9BYU5 128 aa7.1□□□□□ -1.27
COL7A1-205ENST00000465238 KRTAP4-8A0A0G2JLE6 195 aa7.09□□□□□ -1.27
COL7A1-205ENST00000465238 KRTAP4-8Q9BYQ9 185 aa7.09□□□□□ -1.27
COL7A1-205ENST00000465238 V9GYY9 64 aa7.09□□□□□ -1.27
COL7A1-205ENST00000465238 UQCR11O14957 56 aa7.07□□□□□ -1.28
COL7A1-205ENST00000465238 SPRR2DP22532 72 aa7.06□□□□□ -1.28
COL7A1-205ENST00000465238 KRTAP10-7P60409 375 aaPredicted RBP7.05□□□□□ -1.28
COL7A1-205ENST00000465238 Q1T7F1 81 aa7.03□□□□□ -1.28
COL7A1-205ENST00000465238 KRTAP10-12P60413 245 aa7.01□□□□□ -1.29
COL7A1-205ENST00000465238 PSPHP1O15172 72 aa6.99□□□□□ -1.29
COL7A1-205ENST00000465238 RPS28P62857 69 aaKnown RBP6.98□□□□□ -1.29
COL7A1-205ENST00000465238 MIR22HGQ0VDD5 57 aa6.94□□□□□ -1.3
COL7A1-205ENST00000465238 LCE3BQ5TA77 95 aa6.88□□□□□ -1.31
COL7A1-205ENST00000465238 A6NED7 52 aa6.78□□□□□ -1.32
COL7A1-205ENST00000465238 K7ERS5 55 aa6.78□□□□□ -1.32
COL7A1-205ENST00000465238 C10orf95Q9H7T3 257 aa6.78□□□□□ -1.32
COL7A1-205ENST00000465238 TNP1P09430 55 aa6.73□□□□□ -1.33
COL7A1-205ENST00000465238 DSTQ03001 7570 aaKnown RBP6.58□□□□□ -1.36
COL7A1-205ENST00000465238 KRTAP19-7Q3SYF9 63 aa6.58□□□□□ -1.36
COL7A1-205ENST00000465238 LCE5AQ5TCM9 118 aa6.58□□□□□ -1.36
COL7A1-205ENST00000465238 LCE3AQ5TA76 89 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms