RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SERP2Q8N6R1 65 aa7.31□□□□□ -1.24
COL7A1-204ENST00000462475 TRAV7A0A075B6U4 112 aa7.3□□□□□ -1.24
COL7A1-204ENST00000462475 A6NN06 94 aa7.3□□□□□ -1.24
COL7A1-204ENST00000462475 COX7CP15954 63 aa7.29□□□□□ -1.24
COL7A1-204ENST00000462475 UQCRQO14949 82 aa7.26□□□□□ -1.25
COL7A1-204ENST00000462475 KRTAP3-1Q9BYR8 98 aa7.26□□□□□ -1.25
COL7A1-204ENST00000462475 OCR1Q9BZK8 76 aa7.26□□□□□ -1.25
COL7A1-204ENST00000462475 Q5VV11 94 aa7.25□□□□□ -1.25
COL7A1-204ENST00000462475 CCDC179H3BU77 68 aa7.23□□□□□ -1.25
COL7A1-204ENST00000462475 KRTAP19-8Q3LI54 63 aa7.23□□□□□ -1.25
COL7A1-204ENST00000462475 SPRR2GQ9BYE4 73 aa7.23□□□□□ -1.25
COL7A1-204ENST00000462475 S4R3F8 94 aa7.23□□□□□ -1.25
COL7A1-204ENST00000462475 CSAG1Q6PB30 78 aa7.19□□□□□ -1.26
COL7A1-204ENST00000462475 LCA10Q71F78 164 aa7.19□□□□□ -1.26
COL7A1-204ENST00000462475 TP53AIP1Q9HCN2 124 aa7.19□□□□□ -1.26
COL7A1-204ENST00000462475 KRTAP10-5P60370 271 aa7.18□□□□□ -1.26
COL7A1-204ENST00000462475 C1orf64Q8NEQ6 169 aa7.17□□□□□ -1.26
COL7A1-204ENST00000462475 MDN1Q9NU22 5596 aa7.16□□□□□ -1.26
COL7A1-204ENST00000462475 C20orf197Q8N268 126 aa7.14□□□□□ -1.27
COL7A1-204ENST00000462475 KMT2DO14686 5537 aa7.13□□□□□ -1.27
COL7A1-204ENST00000462475 MP68P56378 58 aa7.12□□□□□ -1.27
COL7A1-204ENST00000462475 KLKP1Q107X0 134 aa7.12□□□□□ -1.27
COL7A1-204ENST00000462475 KRTAP20-1Q3LI63 56 aa7.11□□□□□ -1.27
COL7A1-204ENST00000462475 H0Y9P7 68 aa7.1□□□□□ -1.27
COL7A1-204ENST00000462475 H3BPC8 53 aa7.1□□□□□ -1.27
COL7A1-204ENST00000462475 TRAV22A0A0B4J277 110 aa7.09□□□□□ -1.27
COL7A1-204ENST00000462475 KRTAP5-9P26371 169 aa7.09□□□□□ -1.27
COL7A1-204ENST00000462475 SNURFQ9Y675 71 aa7.08□□□□□ -1.28
COL7A1-204ENST00000462475 KRTAP3-3Q9BYR6 98 aa7.07□□□□□ -1.28
COL7A1-204ENST00000462475 NDUFC1O43677 76 aa7.06□□□□□ -1.28
COL7A1-204ENST00000462475 LINC00208Q96KT6 92 aa7.05□□□□□ -1.28
COL7A1-204ENST00000462475 CYSTM1Q9H1C7 97 aa7.05□□□□□ -1.28
COL7A1-204ENST00000462475 H7BZZ5 65 aa7□□□□□ -1.29
COL7A1-204ENST00000462475 LOC101927531A0A1B0GV80 90 aa6.98□□□□□ -1.29
COL7A1-204ENST00000462475 TMEM258P61165 79 aa6.98□□□□□ -1.29
COL7A1-204ENST00000462475 CRIPTQ9P021 101 aa6.97□□□□□ -1.29
COL7A1-204ENST00000462475 CYP4F30PQ9H0H9 118 aa6.95□□□□□ -1.3
COL7A1-204ENST00000462475 ATP5EP56381 51 aaPredicted RBP6.91□□□□□ -1.3
COL7A1-204ENST00000462475 SPANXA2-OT1Q8N9U9 137 aa6.88□□□□□ -1.31
COL7A1-204ENST00000462475 H0YAA0 97 aa6.83□□□□□ -1.32
COL7A1-204ENST00000462475 KRTAP2-3P0C7H8 128 aa6.83□□□□□ -1.32
COL7A1-204ENST00000462475 SPRR2FQ96RM1 72 aa6.83□□□□□ -1.32
COL7A1-204ENST00000462475 KRTAP2-4Q9BYR9 128 aa6.83□□□□□ -1.32
COL7A1-204ENST00000462475 SPRR2EP22531 72 aa6.79□□□□□ -1.32
COL7A1-204ENST00000462475 SPRR2BP35325 72 aa6.79□□□□□ -1.32
COL7A1-204ENST00000462475 SPRR2AP35326 72 aa6.79□□□□□ -1.32
COL7A1-204ENST00000462475 MT1XP80297 61 aa6.79□□□□□ -1.32
COL7A1-204ENST00000462475 A8MUN3 132 aa6.77□□□□□ -1.33
COL7A1-204ENST00000462475 RPS28P62857 69 aaKnown RBP6.77□□□□□ -1.33
COL7A1-204ENST00000462475 ADM2Q7Z4H4 148 aa6.77□□□□□ -1.33
COL7A1-204ENST00000462475 SERP1Q9Y6X1 66 aa6.77□□□□□ -1.33
COL7A1-204ENST00000462475 PRO2289Q9P1D8 64 aa6.76□□□□□ -1.33
COL7A1-204ENST00000462475 KRTAP8-1Q8IUC2 63 aa6.71□□□□□ -1.34
COL7A1-204ENST00000462475 DMAC1Q96GE9 116 aa6.7□□□□□ -1.34
COL7A1-204ENST00000462475 ACYP2P14621 99 aa6.69□□□□□ -1.34
COL7A1-204ENST00000462475 LCE1AQ5T7P2 110 aa6.67□□□□□ -1.34
COL7A1-204ENST00000462475 PLAC4Q8WY50 150 aa6.67□□□□□ -1.34
COL7A1-204ENST00000462475 KRTAP12-2P59991 146 aa6.65□□□□□ -1.34
COL7A1-204ENST00000462475 COA5Q86WW8 74 aa6.65□□□□□ -1.34
COL7A1-204ENST00000462475 SMIM26A0A096LP01 95 aa6.61□□□□□ -1.35
COL7A1-204ENST00000462475 P0C880 135 aa6.6□□□□□ -1.35
COL7A1-204ENST00000462475 KRTAP2-2Q9BYT5 123 aa6.6□□□□□ -1.35
COL7A1-204ENST00000462475 KRTAP2-1Q9BYU5 128 aa6.6□□□□□ -1.35
COL7A1-204ENST00000462475 R4GN34 69 aa6.6□□□□□ -1.35
COL7A1-204ENST00000462475 KRTAP4-8A0A0G2JLE6 195 aa6.59□□□□□ -1.35
COL7A1-204ENST00000462475 KRTAP4-8Q9BYQ9 185 aa6.59□□□□□ -1.35
COL7A1-204ENST00000462475 CHKB-CPT1BH3BT56 60 aa6.57□□□□□ -1.36
COL7A1-204ENST00000462475 M0QZ58 72 aa6.56□□□□□ -1.36
COL7A1-204ENST00000462475 SPRR2DP22532 72 aa6.56□□□□□ -1.36
COL7A1-204ENST00000462475 LINC01554Q52M75 96 aa6.49□□□□□ -1.37
COL7A1-204ENST00000462475 KRTAP3-2Q9BYR7 98 aa6.49□□□□□ -1.37
COL7A1-204ENST00000462475 KRTAP10-7P60409 375 aaPredicted RBP6.47□□□□□ -1.37
COL7A1-204ENST00000462475 SPTSSBQ8NFR3 76 aa6.47□□□□□ -1.37
COL7A1-204ENST00000462475 V9GYY9 64 aa6.47□□□□□ -1.37
COL7A1-204ENST00000462475 Q1T7F1 81 aa6.46□□□□□ -1.38
COL7A1-204ENST00000462475 KRTAP10-12P60413 245 aa6.42□□□□□ -1.38
COL7A1-204ENST00000462475 LINC01558Q9Y6Z2 57 aa6.41□□□□□ -1.38
COL7A1-204ENST00000462475 LCE3BQ5TA77 95 aa6.4□□□□□ -1.38
COL7A1-204ENST00000462475 PRR15LQ9BU68 103 aa6.33□□□□□ -1.4
COL7A1-204ENST00000462475 PSPHP1O15172 72 aa6.31□□□□□ -1.4
COL7A1-204ENST00000462475 A0A1B0GU69 56 aa6.3□□□□□ -1.4
COL7A1-204ENST00000462475 SEC61GP60059 68 aa6.28□□□□□ -1.4
COL7A1-204ENST00000462475 GPR98Q8WXG9 6306 aa6.23□□□□□ -1.41
COL7A1-204ENST00000462475 A6NED7 52 aa6.15□□□□□ -1.42
COL7A1-204ENST00000462475 DSTQ03001 7570 aaKnown RBP6.15□□□□□ -1.43
COL7A1-204ENST00000462475 UQCR11O14957 56 aa6.12□□□□□ -1.43
COL7A1-204ENST00000462475 A0A1B0GU33 70 aa6.11□□□□□ -1.43
COL7A1-204ENST00000462475 KRTAP13-4Q3LI77 160 aa6.07□□□□□ -1.44
COL7A1-204ENST00000462475 KRTAP19-7Q3SYF9 63 aa6.07□□□□□ -1.44
COL7A1-204ENST00000462475 LCE5AQ5TCM9 118 aa6.07□□□□□ -1.44
COL7A1-204ENST00000462475 BRK1Q8WUW1 75 aa6.07□□□□□ -1.44
COL7A1-204ENST00000462475 MIR22HGQ0VDD5 57 aa6.05□□□□□ -1.44
COL7A1-204ENST00000462475 KRTAP4-9Q9BYQ8 210 aa6.05□□□□□ -1.44
COL7A1-204ENST00000462475 CDC42SE1Q9NRR8 79 aa6.05□□□□□ -1.44
COL7A1-204ENST00000462475 SPATA8Q6RVD6 105 aa6.04□□□□□ -1.44
COL7A1-204ENST00000462475 MT1EP04732 61 aa6.03□□□□□ -1.44
COL7A1-204ENST00000462475 CAMK2N1Q7Z7J9 78 aa6.03□□□□□ -1.44
COL7A1-204ENST00000462475 KRTAP19-3Q7Z4W3 81 aa6.02□□□□□ -1.45
COL7A1-204ENST00000462475 SVIPQ8NHG7 77 aa6.02□□□□□ -1.45
COL7A1-204ENST00000462475 A8MU10 97 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms