RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 TMEM258P61165 79 aa9.53□□□□□ -0.88
SHROOM1-204ENST00000440118 Q5W150 140 aa9.52□□□□□ -0.89
SHROOM1-204ENST00000440118 KRTAP9-7A8MTY7 169 aa9.48□□□□□ -0.89
SHROOM1-204ENST00000440118 FCGBPQ9Y6R7 5405 aaPredicted RBP9.48□□□□□ -0.89
SHROOM1-204ENST00000440118 ATP5EP56381 51 aaPredicted RBP9.47□□□□□ -0.89
SHROOM1-204ENST00000440118 KRTAP19-1Q8IUB9 90 aa9.45□□□□□ -0.9
SHROOM1-204ENST00000440118 C4orf26Q17RF5 130 aa9.42□□□□□ -0.9
SHROOM1-204ENST00000440118 TRAV22A0A0B4J277 110 aa9.4□□□□□ -0.9
SHROOM1-204ENST00000440118 SNURFQ9Y675 71 aa9.39□□□□□ -0.91
SHROOM1-204ENST00000440118 H0Y9P7 68 aa9.38□□□□□ -0.91
SHROOM1-204ENST00000440118 H7BZZ5 65 aa9.35□□□□□ -0.91
SHROOM1-204ENST00000440118 RPS28P62857 69 aaKnown RBP9.34□□□□□ -0.91
SHROOM1-204ENST00000440118 LINC00208Q96KT6 92 aa9.33□□□□□ -0.92
SHROOM1-204ENST00000440118 C1orf64Q8NEQ6 169 aa9.32□□□□□ -0.92
SHROOM1-204ENST00000440118 LOC101927531A0A1B0GV80 90 aa9.28□□□□□ -0.92
SHROOM1-204ENST00000440118 S4R3F8 94 aa9.26□□□□□ -0.93
SHROOM1-204ENST00000440118 SPANXA2-OT1Q8N9U9 137 aa9.25□□□□□ -0.93
SHROOM1-204ENST00000440118 CYSTM1Q9H1C7 97 aa9.24□□□□□ -0.93
SHROOM1-204ENST00000440118 KRTAP19-6Q3LI70 58 aa9.23□□□□□ -0.93
SHROOM1-204ENST00000440118 SERP1Q9Y6X1 66 aa9.23□□□□□ -0.93
SHROOM1-204ENST00000440118 MACF1Q9UPN3 7388 aaKnown RBP9.21□□□□□ -0.94
SHROOM1-204ENST00000440118 CSAG1Q6PB30 78 aa9.18□□□□□ -0.94
SHROOM1-204ENST00000440118 KRTAP3-1Q9BYR8 98 aa9.17□□□□□ -0.94
SHROOM1-204ENST00000440118 CYP4F30PQ9H0H9 118 aa9.16□□□□□ -0.94
SHROOM1-204ENST00000440118 LCA10Q71F78 164 aa9.14□□□□□ -0.95
SHROOM1-204ENST00000440118 SYNE2Q8WXH0 6885 aaKnown RBP9.12□□□□□ -0.95
SHROOM1-204ENST00000440118 SMIM26A0A096LP01 95 aa9.05□□□□□ -0.96
SHROOM1-204ENST00000440118 Q5VV11 94 aa8.98□□□□□ -0.97
SHROOM1-204ENST00000440118 ACYP2P14621 99 aa8.97□□□□□ -0.97
SHROOM1-204ENST00000440118 V9GYY9 64 aa8.95□□□□□ -0.98
SHROOM1-204ENST00000440118 SPRR2GQ9BYE4 73 aa8.92□□□□□ -0.98
SHROOM1-204ENST00000440118 KRTAP3-3Q9BYR6 98 aa8.92□□□□□ -0.98
SHROOM1-204ENST00000440118 A6NN06 94 aa8.91□□□□□ -0.98
SHROOM1-204ENST00000440118 A8MUN3 132 aa8.9□□□□□ -0.98
SHROOM1-204ENST00000440118 MT1BP07438 61 aa8.87□□□□□ -0.99
SHROOM1-204ENST00000440118 DMAC1Q96GE9 116 aa8.86□□□□□ -0.99
SHROOM1-204ENST00000440118 KRTAP19-8Q3LI54 63 aa8.85□□□□□ -0.99
SHROOM1-204ENST00000440118 COA5Q86WW8 74 aa8.84□□□□□ -0.99
SHROOM1-204ENST00000440118 CRIPTQ9P021 101 aa8.83□□□□□ -1
SHROOM1-204ENST00000440118 CHKB-CPT1BH3BT56 60 aa8.82□□□□□ -1
SHROOM1-204ENST00000440118 KRTAP6-3Q3LI67 103 aa8.82□□□□□ -1
SHROOM1-204ENST00000440118 Q1T7F1 81 aa8.79□□□□□ -1
SHROOM1-204ENST00000440118 SPTSSBQ8NFR3 76 aa8.77□□□□□ -1.01
SHROOM1-204ENST00000440118 H0YAA0 97 aa8.71□□□□□ -1.02
SHROOM1-204ENST00000440118 KRTAP10-5P60370 271 aa8.7□□□□□ -1.02
SHROOM1-204ENST00000440118 ADM2Q7Z4H4 148 aa8.69□□□□□ -1.02
SHROOM1-204ENST00000440118 PRR15LQ9BU68 103 aa8.63□□□□□ -1.03
SHROOM1-204ENST00000440118 LINC01558Q9Y6Z2 57 aa8.62□□□□□ -1.03
SHROOM1-204ENST00000440118 NEBP20929 6669 aa8.56□□□□□ -1.04
SHROOM1-204ENST00000440118 SEC61GP60059 68 aa8.55□□□□□ -1.04
SHROOM1-204ENST00000440118 MUC12Q9UKN1 5478 aa8.53□□□□□ -1.04
SHROOM1-204ENST00000440118 R4GN34 69 aa8.5□□□□□ -1.05
SHROOM1-204ENST00000440118 A0A1B0GU69 56 aa8.48□□□□□ -1.05
SHROOM1-204ENST00000440118 PSPHP1O15172 72 aa8.48□□□□□ -1.05
SHROOM1-204ENST00000440118 PLAC4Q8WY50 150 aa8.48□□□□□ -1.05
SHROOM1-204ENST00000440118 PRO2289Q9P1D8 64 aa8.47□□□□□ -1.05
SHROOM1-204ENST00000440118 M0QZ58 72 aa8.43□□□□□ -1.06
SHROOM1-204ENST00000440118 P0C880 135 aa8.43□□□□□ -1.06
SHROOM1-204ENST00000440118 KRTAP5-9P26371 169 aa8.37□□□□□ -1.07
SHROOM1-204ENST00000440118 A6NED7 52 aa8.36□□□□□ -1.07
SHROOM1-204ENST00000440118 LINC01554Q52M75 96 aa8.35□□□□□ -1.07
SHROOM1-204ENST00000440118 BRK1Q8WUW1 75 aa8.34□□□□□ -1.07
SHROOM1-204ENST00000440118 PRO0628Q9UI54 55 aa8.33□□□□□ -1.08
SHROOM1-204ENST00000440118 KMT2DO14686 5537 aa8.33□□□□□ -1.08
SHROOM1-204ENST00000440118 MT1XP80297 61 aa8.32□□□□□ -1.08
SHROOM1-204ENST00000440118 UQCR11O14957 56 aa8.3□□□□□ -1.08
SHROOM1-204ENST00000440118 MDN1Q9NU22 5596 aa8.29□□□□□ -1.08
SHROOM1-204ENST00000440118 KRTAP20-1Q3LI63 56 aa8.28□□□□□ -1.08
SHROOM1-204ENST00000440118 KRTAP3-2Q9BYR7 98 aa8.28□□□□□ -1.08
SHROOM1-204ENST00000440118 CDC42SE1Q9NRR8 79 aa8.24□□□□□ -1.09
SHROOM1-204ENST00000440118 SPRR2FQ96RM1 72 aa8.22□□□□□ -1.09
SHROOM1-204ENST00000440118 KRTAP8-1Q8IUC2 63 aa8.18□□□□□ -1.1
SHROOM1-204ENST00000440118 A0A1B0GU33 70 aa8.15□□□□□ -1.1
SHROOM1-204ENST00000440118 MIR22HGQ0VDD5 57 aa8.15□□□□□ -1.1
SHROOM1-204ENST00000440118 SPATA8Q6RVD6 105 aa8.14□□□□□ -1.11
SHROOM1-204ENST00000440118 KRTAP12-2P59991 146 aa8.13□□□□□ -1.11
SHROOM1-204ENST00000440118 SPRR2EP22531 72 aa8.11□□□□□ -1.11
SHROOM1-204ENST00000440118 SPRR2BP35325 72 aa8.11□□□□□ -1.11
SHROOM1-204ENST00000440118 SPRR2AP35326 72 aa8.11□□□□□ -1.11
SHROOM1-204ENST00000440118 K7ERS5 55 aa8□□□□□ -1.13
SHROOM1-204ENST00000440118 KRTAP2-3P0C7H8 128 aa7.99□□□□□ -1.13
SHROOM1-204ENST00000440118 KRTAP2-4Q9BYR9 128 aa7.99□□□□□ -1.13
SHROOM1-204ENST00000440118 KRTAP4-8A0A0G2JLE6 195 aa7.98□□□□□ -1.13
SHROOM1-204ENST00000440118 KRTAP4-8Q9BYQ9 185 aa7.98□□□□□ -1.13
SHROOM1-204ENST00000440118 PMAIP1Q13794 54 aa7.97□□□□□ -1.13
SHROOM1-204ENST00000440118 SVIPQ8NHG7 77 aa7.97□□□□□ -1.13
SHROOM1-204ENST00000440118 KRTAP10-7P60409 375 aaPredicted RBP7.95□□□□□ -1.14
SHROOM1-204ENST00000440118 LCE1AQ5T7P2 110 aa7.91□□□□□ -1.14
SHROOM1-204ENST00000440118 KRTAP10-12P60413 245 aa7.89□□□□□ -1.15
SHROOM1-204ENST00000440118 SPRR2DP22532 72 aa7.85□□□□□ -1.15
SHROOM1-204ENST00000440118 CAMK2N1Q7Z7J9 78 aa7.85□□□□□ -1.15
SHROOM1-204ENST00000440118 A8MU10 97 aa7.82□□□□□ -1.16
SHROOM1-204ENST00000440118 KRTAP13-4Q3LI77 160 aa7.82□□□□□ -1.16
SHROOM1-204ENST00000440118 KRTAP2-2Q9BYT5 123 aa7.73□□□□□ -1.17
SHROOM1-204ENST00000440118 KRTAP2-1Q9BYU5 128 aa7.73□□□□□ -1.17
SHROOM1-204ENST00000440118 A0A0D9SG42 100 aa7.71□□□□□ -1.18
SHROOM1-204ENST00000440118 KTN1-AS1Q86SY8 53 aa7.68□□□□□ -1.18
SHROOM1-204ENST00000440118 LCE3BQ5TA77 95 aa7.61□□□□□ -1.19
SHROOM1-204ENST00000440118 SPINT4Q6UDR6 99 aa7.61□□□□□ -1.19
SHROOM1-204ENST00000440118 KRTAP12-1P59990 96 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms