RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 FAM236DA0A1B0GTK5 79 aa6.14□□□□□ -1.43
PTPRF-208ENST00000437607 FAM236CP0DP71 79 aa6.14□□□□□ -1.43
PTPRF-208ENST00000437607 PCP4P48539 62 aa6.14□□□□□ -1.43
PTPRF-208ENST00000437607 C4orf26Q17RF5 130 aa6.13□□□□□ -1.43
PTPRF-208ENST00000437607 MPLKIPQ8TAP9 179 aa6.1□□□□□ -1.43
PTPRF-208ENST00000437607 CYSTM1Q9H1C7 97 aa6.1□□□□□ -1.43
PTPRF-208ENST00000437607 H7BZZ5 65 aa6.09□□□□□ -1.43
PTPRF-208ENST00000437607 SPANXA2-OT1Q8N9U9 137 aa6.08□□□□□ -1.44
PTPRF-208ENST00000437607 MACF1Q9UPN3 7388 aaKnown RBP6.08□□□□□ -1.44
PTPRF-208ENST00000437607 SYNE2Q8WXH0 6885 aaKnown RBP6.06□□□□□ -1.44
PTPRF-208ENST00000437607 A8MUN3 132 aa6.06□□□□□ -1.44
PTPRF-208ENST00000437607 DMAC1Q96GE9 116 aa6.04□□□□□ -1.44
PTPRF-208ENST00000437607 MT2AP02795 61 aa6.03□□□□□ -1.44
PTPRF-208ENST00000437607 TMEM258P61165 79 aa6.03□□□□□ -1.44
PTPRF-208ENST00000437607 ATP5EP56381 51 aaPredicted RBP6.02□□□□□ -1.45
PTPRF-208ENST00000437607 LCE2BO14633 110 aa6.01□□□□□ -1.45
PTPRF-208ENST00000437607 H1FX-AS1Q4G0G2 97 aa6□□□□□ -1.45
PTPRF-208ENST00000437607 KRTAP19-1Q8IUB9 90 aa6□□□□□ -1.45
PTPRF-208ENST00000437607 MT1FP04733 61 aa5.99□□□□□ -1.45
PTPRF-208ENST00000437607 ACYP2P14621 99 aa5.97□□□□□ -1.45
PTPRF-208ENST00000437607 KRTAP3-1Q9BYR8 98 aa5.97□□□□□ -1.45
PTPRF-208ENST00000437607 KRTAP9-3Q9BYQ3 159 aa5.96□□□□□ -1.46
PTPRF-208ENST00000437607 S4R3F8 94 aa5.96□□□□□ -1.46
PTPRF-208ENST00000437607 CHKB-CPT1BH3BT56 60 aa5.93□□□□□ -1.46
PTPRF-208ENST00000437607 KRTAP10-10P60014 251 aa5.9□□□□□ -1.46
PTPRF-208ENST00000437607 COA5Q86WW8 74 aa5.9□□□□□ -1.46
PTPRF-208ENST00000437607 LCA10Q71F78 164 aa5.88□□□□□ -1.47
PTPRF-208ENST00000437607 SPTSSBQ8NFR3 76 aa5.86□□□□□ -1.47
PTPRF-208ENST00000437607 KRTAP19-6Q3LI70 58 aa5.82□□□□□ -1.48
PTPRF-208ENST00000437607 SERP1Q9Y6X1 66 aa5.82□□□□□ -1.48
PTPRF-208ENST00000437607 CSAG1Q6PB30 78 aa5.81□□□□□ -1.48
PTPRF-208ENST00000437607 KRTAP3-3Q9BYR6 98 aa5.78□□□□□ -1.48
PTPRF-208ENST00000437607 NEBP20929 6669 aa5.71□□□□□ -1.5
PTPRF-208ENST00000437607 KRTAP6-3Q3LI67 103 aa5.7□□□□□ -1.5
PTPRF-208ENST00000437607 H0YAA0 97 aa5.66□□□□□ -1.5
PTPRF-208ENST00000437607 RPS28P62857 69 aaKnown RBP5.66□□□□□ -1.5
PTPRF-208ENST00000437607 SEC61GP60059 68 aa5.65□□□□□ -1.5
PTPRF-208ENST00000437607 ADM2Q7Z4H4 148 aa5.64□□□□□ -1.51
PTPRF-208ENST00000437607 SMIM26A0A096LP01 95 aa5.62□□□□□ -1.51
PTPRF-208ENST00000437607 MUC12Q9UKN1 5478 aa5.61□□□□□ -1.51
PTPRF-208ENST00000437607 A0A1B0GU69 56 aa5.6□□□□□ -1.51
PTPRF-208ENST00000437607 V9GYY9 64 aa5.6□□□□□ -1.51
PTPRF-208ENST00000437607 PRR15LQ9BU68 103 aa5.59□□□□□ -1.51
PTPRF-208ENST00000437607 LINC01558Q9Y6Z2 57 aa5.59□□□□□ -1.51
PTPRF-208ENST00000437607 P0C880 135 aa5.55□□□□□ -1.52
PTPRF-208ENST00000437607 Q1T7F1 81 aa5.54□□□□□ -1.52
PTPRF-208ENST00000437607 KRTAP3-2Q9BYR7 98 aa5.54□□□□□ -1.52
PTPRF-208ENST00000437607 CRIPTQ9P021 101 aa5.5□□□□□ -1.53
PTPRF-208ENST00000437607 R4GN34 69 aa5.48□□□□□ -1.53
PTPRF-208ENST00000437607 PSPHP1O15172 72 aa5.47□□□□□ -1.53
PTPRF-208ENST00000437607 A0A1B0GU33 70 aa5.46□□□□□ -1.54
PTPRF-208ENST00000437607 M0QZ58 72 aa5.46□□□□□ -1.54
PTPRF-208ENST00000437607 MT1BP07438 61 aa5.43□□□□□ -1.54
PTPRF-208ENST00000437607 MDN1Q9NU22 5596 aa5.41□□□□□ -1.54
PTPRF-208ENST00000437607 A6NN06 94 aa5.41□□□□□ -1.54
PTPRF-208ENST00000437607 Q5VV11 94 aa5.41□□□□□ -1.54
PTPRF-208ENST00000437607 UQCR11O14957 56 aa5.39□□□□□ -1.55
PTPRF-208ENST00000437607 KRTAP20-1Q3LI63 56 aa5.39□□□□□ -1.55
PTPRF-208ENST00000437607 SPRR2GQ9BYE4 73 aa5.38□□□□□ -1.55
PTPRF-208ENST00000437607 KMT2DO14686 5537 aa5.37□□□□□ -1.55
PTPRF-208ENST00000437607 KRTAP19-8Q3LI54 63 aa5.36□□□□□ -1.55
PTPRF-208ENST00000437607 KRTAP13-4Q3LI77 160 aa5.36□□□□□ -1.55
PTPRF-208ENST00000437607 LINC01554Q52M75 96 aa5.36□□□□□ -1.55
PTPRF-208ENST00000437607 A6NED7 52 aa5.35□□□□□ -1.55
PTPRF-208ENST00000437607 SPATA8Q6RVD6 105 aa5.35□□□□□ -1.55
PTPRF-208ENST00000437607 KRTAP5-9P26371 169 aa5.34□□□□□ -1.55
PTPRF-208ENST00000437607 KRTAP10-5P60370 271 aa5.34□□□□□ -1.55
PTPRF-208ENST00000437607 A0A0D9SG42 100 aa5.31□□□□□ -1.56
PTPRF-208ENST00000437607 MIR22HGQ0VDD5 57 aa5.31□□□□□ -1.56
PTPRF-208ENST00000437607 A8MU10 97 aa5.25□□□□□ -1.57
PTPRF-208ENST00000437607 PLAC4Q8WY50 150 aa5.21□□□□□ -1.58
PTPRF-208ENST00000437607 CDC42SE1Q9NRR8 79 aa5.21□□□□□ -1.58
PTPRF-208ENST00000437607 SPINT4Q6UDR6 99 aa5.2□□□□□ -1.58
PTPRF-208ENST00000437607 KRTAP2-3P0C7H8 128 aa5.18□□□□□ -1.58
PTPRF-208ENST00000437607 KRTAP2-4Q9BYR9 128 aa5.18□□□□□ -1.58
PTPRF-208ENST00000437607 K7ERS5 55 aa5.17□□□□□ -1.58
PTPRF-208ENST00000437607 KRTAP12-1P59990 96 aa5.17□□□□□ -1.58
PTPRF-208ENST00000437607 BRK1Q8WUW1 75 aa5.15□□□□□ -1.59
PTPRF-208ENST00000437607 KRTAP12-2P59991 146 aa5.14□□□□□ -1.59
PTPRF-208ENST00000437607 CAMK2N1Q7Z7J9 78 aa5.13□□□□□ -1.59
PTPRF-208ENST00000437607 SPRR2FQ96RM1 72 aa5.09□□□□□ -1.59
PTPRF-208ENST00000437607 SPRR2EP22531 72 aa5.08□□□□□ -1.6
PTPRF-208ENST00000437607 SPRR2BP35325 72 aa5.08□□□□□ -1.6
PTPRF-208ENST00000437607 SPRR2AP35326 72 aa5.08□□□□□ -1.6
PTPRF-208ENST00000437607 PRO2289Q9P1D8 64 aa5.05□□□□□ -1.6
PTPRF-208ENST00000437607 MT1XP80297 61 aa5.02□□□□□ -1.61
PTPRF-208ENST00000437607 LCE1AQ5T7P2 110 aa5□□□□□ -1.61
PTPRF-208ENST00000437607 KRTAP2-2Q9BYT5 123 aa4.99□□□□□ -1.61
PTPRF-208ENST00000437607 KRTAP2-1Q9BYU5 128 aa4.99□□□□□ -1.61
PTPRF-208ENST00000437607 KRTAP8-1Q8IUC2 63 aa4.97□□□□□ -1.61
PTPRF-208ENST00000437607 PRO0628Q9UI54 55 aa4.92□□□□□ -1.62
PTPRF-208ENST00000437607 SPRR2DP22532 72 aa4.91□□□□□ -1.62
PTPRF-208ENST00000437607 KRTAP4-8A0A0G2JLE6 195 aa4.9□□□□□ -1.63
PTPRF-208ENST00000437607 KRTAP4-8Q9BYQ9 185 aa4.9□□□□□ -1.63
PTPRF-208ENST00000437607 C10orf95Q9H7T3 257 aa4.87□□□□□ -1.63
PTPRF-208ENST00000437607 ROMO1P60602 79 aa4.86□□□□□ -1.63
PTPRF-208ENST00000437607 TNP1P09430 55 aa4.83□□□□□ -1.64
PTPRF-208ENST00000437607 PMAIP1Q13794 54 aa4.83□□□□□ -1.64
PTPRF-208ENST00000437607 LCE3BQ5TA77 95 aa4.81□□□□□ -1.64
PTPRF-208ENST00000437607 GPR98Q8WXG9 6306 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms