RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 PCLOQ9Y6V0 5065 aa11.14□□□□□ -0.63
PTPRF-207ENST00000436724 PMAIP1Q13794 54 aa11.13□□□□□ -0.63
PTPRF-207ENST00000436724 SPTSSBQ8NFR3 76 aa11.12□□□□□ -0.63
PTPRF-207ENST00000436724 A0A1B0GU69 56 aa11□□□□□ -0.65
PTPRF-207ENST00000436724 A6NN06 94 aa10.99□□□□□ -0.65
PTPRF-207ENST00000436724 HERC1Q15751 4861 aa10.96□□□□□ -0.65
PTPRF-207ENST00000436724 KRTAP3-1Q9BYR8 98 aa10.94□□□□□ -0.66
PTPRF-207ENST00000436724 KTN1-AS1Q86SY8 53 aa10.86□□□□□ -0.67
PTPRF-207ENST00000436724 COX6B2Q6YFQ2 88 aa10.86□□□□□ -0.67
PTPRF-207ENST00000436724 SPATA8Q6RVD6 105 aa10.85□□□□□ -0.67
PTPRF-207ENST00000436724 UQCR11O14957 56 aa10.79□□□□□ -0.68
PTPRF-207ENST00000436724 MIR22HGQ0VDD5 57 aa10.77□□□□□ -0.69
PTPRF-207ENST00000436724 SEC61BP60468 96 aaKnown RBP10.75□□□□□ -0.69
PTPRF-207ENST00000436724 HMCN2Q8NDA2 5059 aa10.74□□□□□ -0.69
PTPRF-207ENST00000436724 SEC61GP60059 68 aa10.68□□□□□ -0.7
PTPRF-207ENST00000436724 KRTAP4-1Q9BYQ7 146 aa10.68□□□□□ -0.7
PTPRF-207ENST00000436724 MUC17Q685J3 4493 aa10.67□□□□□ -0.7
PTPRF-207ENST00000436724 MUC2Q02817 5179 aa10.6□□□□□ -0.71
PTPRF-207ENST00000436724 RBM12B-AS1Q9P1G2 102 aa10.59□□□□□ -0.71
PTPRF-207ENST00000436724 H1FX-AS1Q4G0G2 97 aa10.54□□□□□ -0.72
PTPRF-207ENST00000436724 KRTAP3-3Q9BYR6 98 aa10.53□□□□□ -0.72
PTPRF-207ENST00000436724 S4R3F8 94 aa10.52□□□□□ -0.73
PTPRF-207ENST00000436724 H0YAA0 97 aa10.48□□□□□ -0.73
PTPRF-207ENST00000436724 ADM2Q7Z4H4 148 aa10.48□□□□□ -0.73
PTPRF-207ENST00000436724 A0A1B0GU33 70 aa10.45□□□□□ -0.74
PTPRF-207ENST00000436724 PRAC1Q96KF2 57 aa10.45□□□□□ -0.74
PTPRF-207ENST00000436724 KRTAP19-2Q3LHN2 52 aa10.36□□□□□ -0.75
PTPRF-207ENST00000436724 UBR4Q5T4S7 5183 aa10.34□□□□□ -0.75
PTPRF-207ENST00000436724 CSAG1Q6PB30 78 aa10.25□□□□□ -0.77
PTPRF-207ENST00000436724 RNF213Q63HN8 5207 aa10.23□□□□□ -0.77
PTPRF-207ENST00000436724 KRTAP10-6P60371 365 aaPredicted RBP10.23□□□□□ -0.77
PTPRF-207ENST00000436724 KRTAP3-2Q9BYR7 98 aa10.19□□□□□ -0.78
PTPRF-207ENST00000436724 FAT4Q6V0I7 4981 aa10.13□□□□□ -0.79
PTPRF-207ENST00000436724 P0C880 135 aa10.12□□□□□ -0.79
PTPRF-207ENST00000436724 FLGP20930 4061 aaPredicted RBP10.12□□□□□ -0.79
PTPRF-207ENST00000436724 KRTAP13-4Q3LI77 160 aa10.09□□□□□ -0.79
PTPRF-207ENST00000436724 LCE2CQ5TA81 110 aa10.07□□□□□ -0.8
PTPRF-207ENST00000436724 LINC01554Q52M75 96 aa10.05□□□□□ -0.8
PTPRF-207ENST00000436724 K7ERS5 55 aa10.02□□□□□ -0.8
PTPRF-207ENST00000436724 A0A0D9SG42 100 aa9.95□□□□□ -0.82
PTPRF-207ENST00000436724 KRTAP25-1Q3LHN0 102 aa9.91□□□□□ -0.82
PTPRF-207ENST00000436724 MT1HP80294 61 aa9.85□□□□□ -0.83
PTPRF-207ENST00000436724 ROMO1P60602 79 aa9.84□□□□□ -0.83
PTPRF-207ENST00000436724 LORP23490 312 aaPredicted RBP9.83□□□□□ -0.84
PTPRF-207ENST00000436724 CRIPTQ9P021 101 aa9.81□□□□□ -0.84
PTPRF-207ENST00000436724 M0R2T5 61 aa9.78□□□□□ -0.84
PTPRF-207ENST00000436724 KRTAP12-2P59991 146 aa9.74□□□□□ -0.85
PTPRF-207ENST00000436724 M0QZ58 72 aa9.74□□□□□ -0.85
PTPRF-207ENST00000436724 R4GN34 69 aa9.73□□□□□ -0.85
PTPRF-207ENST00000436724 KRTAP12-1P59990 96 aa9.69□□□□□ -0.86
PTPRF-207ENST00000436724 SPINT4Q6UDR6 99 aa9.63□□□□□ -0.87
PTPRF-207ENST00000436724 KRTAP9-8Q9BYQ0 159 aa9.51□□□□□ -0.89
PTPRF-207ENST00000436724 C10orf95Q9H7T3 257 aa9.5□□□□□ -0.89
PTPRF-207ENST00000436724 MT2AP02795 61 aa9.49□□□□□ -0.89
PTPRF-207ENST00000436724 MT1FP04733 61 aa9.47□□□□□ -0.89
PTPRF-207ENST00000436724 KRTAP10-10P60014 251 aa9.43□□□□□ -0.9
PTPRF-207ENST00000436724 KRTAP19-1Q8IUB9 90 aa9.34□□□□□ -0.91
PTPRF-207ENST00000436724 LCE2AQ5TA79 106 aaPredicted RBP9.33□□□□□ -0.92
PTPRF-207ENST00000436724 SPRR2GQ9BYE4 73 aa9.32□□□□□ -0.92
PTPRF-207ENST00000436724 KRTAP9-3Q9BYQ3 159 aa9.14□□□□□ -0.95
PTPRF-207ENST00000436724 CAMK2N1Q7Z7J9 78 aa9.13□□□□□ -0.95
PTPRF-207ENST00000436724 KRTAP15-1Q3LI76 137 aa9.04□□□□□ -0.96
PTPRF-207ENST00000436724 KRTAP19-8Q3LI54 63 aa9.03□□□□□ -0.96
PTPRF-207ENST00000436724 PLAC4Q8WY50 150 aa9.03□□□□□ -0.96
PTPRF-207ENST00000436724 MT1BP07438 61 aa8.97□□□□□ -0.97
PTPRF-207ENST00000436724 H3BS24 57 aa8.93□□□□□ -0.98
PTPRF-207ENST00000436724 LCE2BO14633 110 aa8.91□□□□□ -0.98
PTPRF-207ENST00000436724 USH2AO75445 5202 aa8.81□□□□□ -1
PTPRF-207ENST00000436724 PP632Q6XCG6 107 aa8.73□□□□□ -1.01
PTPRF-207ENST00000436724 MT1XP80297 61 aa8.72□□□□□ -1.01
PTPRF-207ENST00000436724 KRTAP10-5P60370 271 aa8.72□□□□□ -1.01
PTPRF-207ENST00000436724 NDUFAF8A1L188 74 aa8.7□□□□□ -1.02
PTPRF-207ENST00000436724 TNP1P09430 55 aa8.66□□□□□ -1.02
PTPRF-207ENST00000436724 KRTAP23-1A1A580 65 aa8.52□□□□□ -1.05
PTPRF-207ENST00000436724 FSIP2Q5CZC0 6907 aa8.51□□□□□ -1.05
PTPRF-207ENST00000436724 PRO2289Q9P1D8 64 aa8.5□□□□□ -1.05
PTPRF-207ENST00000436724 KRTAP10-7P60409 375 aaPredicted RBP8.43□□□□□ -1.06
PTPRF-207ENST00000436724 SSPOA2VEC9 5147 aa8.41□□□□□ -1.06
PTPRF-207ENST00000436724 LCE3AQ5TA76 89 aa8.36□□□□□ -1.07
PTPRF-207ENST00000436724 LCE2DQ5TA82 110 aaPredicted RBP8.33□□□□□ -1.08
PTPRF-207ENST00000436724 KRTAP10-12P60413 245 aa8.29□□□□□ -1.08
PTPRF-207ENST00000436724 KRTAP19-6Q3LI70 58 aa8.23□□□□□ -1.09
PTPRF-207ENST00000436724 KMT2DO14686 5537 aa8.22□□□□□ -1.09
PTPRF-207ENST00000436724 LUZP6Q538Z0 58 aa8.19□□□□□ -1.1
PTPRF-207ENST00000436724 SPRR5A0A1B0GTR4 108 aa8.15□□□□□ -1.1
PTPRF-207ENST00000436724 KRTAP8-1Q8IUC2 63 aa8.11□□□□□ -1.11
PTPRF-207ENST00000436724 KRTAP4-8A0A0G2JLE6 195 aa8.11□□□□□ -1.11
PTPRF-207ENST00000436724 KRTAP4-8Q9BYQ9 185 aa8.11□□□□□ -1.11
PTPRF-207ENST00000436724 KRTAP9-2Q9BYQ4 174 aa8.03□□□□□ -1.12
PTPRF-207ENST00000436724 FCGBPQ9Y6R7 5405 aaPredicted RBP8.02□□□□□ -1.13
PTPRF-207ENST00000436724 KRTAP12-3P60328 96 aa7.98□□□□□ -1.13
PTPRF-207ENST00000436724 KRTAP19-5Q3LI72 72 aa7.93□□□□□ -1.14
PTPRF-207ENST00000436724 KRTAP19-7Q3SYF9 63 aa7.78□□□□□ -1.16
PTPRF-207ENST00000436724 CRCT1Q9UGL9 99 aa7.74□□□□□ -1.17
PTPRF-207ENST00000436724 MACF1Q9UPN3 7388 aaKnown RBP7.68□□□□□ -1.18
PTPRF-207ENST00000436724 A0A0A0MQY5 61 aa7.67□□□□□ -1.18
PTPRF-207ENST00000436724 MT1EP04732 61 aa7.61□□□□□ -1.19
PTPRF-207ENST00000436724 MUC12Q9UKN1 5478 aa7.52□□□□□ -1.21
PTPRF-207ENST00000436724 MT1LQ93083 61 aa7.49□□□□□ -1.21
PTPRF-207ENST00000436724 SYNE2Q8WXH0 6885 aaKnown RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms