RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.93□□□□□ -0.66
SMARCB1-205ENST00000417137 TRAV7A0A075B6U4 112 aa10.92□□□□□ -0.66
SMARCB1-205ENST00000417137 A8MUN3 132 aa10.92□□□□□ -0.66
SMARCB1-205ENST00000417137 KRTAP9-3Q9BYQ3 159 aa10.85□□□□□ -0.67
SMARCB1-205ENST00000417137 KRTAP3-3Q9BYR6 98 aa10.84□□□□□ -0.67
SMARCB1-205ENST00000417137 KRTAP3-2Q9BYR7 98 aa10.84□□□□□ -0.67
SMARCB1-205ENST00000417137 NDUFC1O43677 76 aa10.78□□□□□ -0.68
SMARCB1-205ENST00000417137 USH2AO75445 5202 aa10.76□□□□□ -0.69
SMARCB1-205ENST00000417137 SSPOA2VEC9 5147 aa10.75□□□□□ -0.69
SMARCB1-205ENST00000417137 LCE2BO14633 110 aa10.69□□□□□ -0.7
SMARCB1-205ENST00000417137 SERP2Q8N6R1 65 aa10.69□□□□□ -0.7
SMARCB1-205ENST00000417137 DMAC1Q96GE9 116 aa10.69□□□□□ -0.7
SMARCB1-205ENST00000417137 SNURFQ9Y675 71 aa10.62□□□□□ -0.71
SMARCB1-205ENST00000417137 FCGBPQ9Y6R7 5405 aaPredicted RBP10.61□□□□□ -0.71
SMARCB1-205ENST00000417137 C20orf197Q8N268 126 aa10.59□□□□□ -0.71
SMARCB1-205ENST00000417137 ACYP2P14621 99 aa10.57□□□□□ -0.72
SMARCB1-205ENST00000417137 H0YAA0 97 aa10.54□□□□□ -0.72
SMARCB1-205ENST00000417137 KRTAP19-1Q8IUB9 90 aa10.52□□□□□ -0.73
SMARCB1-205ENST00000417137 SPANXA2-OT1Q8N9U9 137 aa10.47□□□□□ -0.73
SMARCB1-205ENST00000417137 CRIPTQ9P021 101 aa10.47□□□□□ -0.73
SMARCB1-205ENST00000417137 COX7CP15954 63 aa10.46□□□□□ -0.73
SMARCB1-205ENST00000417137 ADM2Q7Z4H4 148 aa10.43□□□□□ -0.74
SMARCB1-205ENST00000417137 SPRR2GQ9BYE4 73 aa10.42□□□□□ -0.74
SMARCB1-205ENST00000417137 SPTSSBQ8NFR3 76 aa10.41□□□□□ -0.74
SMARCB1-205ENST00000417137 MACF1Q9UPN3 7388 aaKnown RBP10.4□□□□□ -0.74
SMARCB1-205ENST00000417137 SYNE2Q8WXH0 6885 aaKnown RBP10.39□□□□□ -0.75
SMARCB1-205ENST00000417137 CHKB-CPT1BH3BT56 60 aa10.38□□□□□ -0.75
SMARCB1-205ENST00000417137 ANAPC13Q9BS18 74 aa10.31□□□□□ -0.76
SMARCB1-205ENST00000417137 Q5VV11 94 aa10.3□□□□□ -0.76
SMARCB1-205ENST00000417137 KRTAP19-6Q3LI70 58 aa10.29□□□□□ -0.76
SMARCB1-205ENST00000417137 KRTAP19-8Q3LI54 63 aa10.28□□□□□ -0.76
SMARCB1-205ENST00000417137 P0C880 135 aa10.2□□□□□ -0.78
SMARCB1-205ENST00000417137 MT1BP07438 61 aa10.19□□□□□ -0.78
SMARCB1-205ENST00000417137 H7BZZ5 65 aa10.18□□□□□ -0.78
SMARCB1-205ENST00000417137 R4GN34 69 aa10.17□□□□□ -0.78
SMARCB1-205ENST00000417137 CYSTM1Q9H1C7 97 aa10.14□□□□□ -0.79
SMARCB1-205ENST00000417137 COA5Q86WW8 74 aa10.13□□□□□ -0.79
SMARCB1-205ENST00000417137 M0QZ58 72 aa10.08□□□□□ -0.8
SMARCB1-205ENST00000417137 KRTAP6-3Q3LI67 103 aa10.08□□□□□ -0.8
SMARCB1-205ENST00000417137 CCDC179H3BU77 68 aa10.04□□□□□ -0.8
SMARCB1-205ENST00000417137 A6NN06 94 aa10.01□□□□□ -0.81
SMARCB1-205ENST00000417137 PLAC4Q8WY50 150 aa9.95□□□□□ -0.82
SMARCB1-205ENST00000417137 KRTAP10-5P60370 271 aa9.92□□□□□ -0.82
SMARCB1-205ENST00000417137 LINC01554Q52M75 96 aa9.91□□□□□ -0.82
SMARCB1-205ENST00000417137 SEC61GP60059 68 aa9.9□□□□□ -0.82
SMARCB1-205ENST00000417137 ATP5EP56381 51 aaPredicted RBP9.88□□□□□ -0.83
SMARCB1-205ENST00000417137 SERP1Q9Y6X1 66 aa9.86□□□□□ -0.83
SMARCB1-205ENST00000417137 NEBP20929 6669 aa9.8□□□□□ -0.84
SMARCB1-205ENST00000417137 PRO2289Q9P1D8 64 aa9.79□□□□□ -0.84
SMARCB1-205ENST00000417137 TMEM258P61165 79 aa9.73□□□□□ -0.85
SMARCB1-205ENST00000417137 MT1XP80297 61 aa9.66□□□□□ -0.86
SMARCB1-205ENST00000417137 KRTAP13-4Q3LI77 160 aa9.66□□□□□ -0.86
SMARCB1-205ENST00000417137 A0A1B0GU69 56 aa9.65□□□□□ -0.86
SMARCB1-205ENST00000417137 A0A1B0GU33 70 aa9.64□□□□□ -0.87
SMARCB1-205ENST00000417137 MUC12Q9UKN1 5478 aa9.61□□□□□ -0.87
SMARCB1-205ENST00000417137 KRTAP20-1Q3LI63 56 aa9.57□□□□□ -0.88
SMARCB1-205ENST00000417137 SPATA8Q6RVD6 105 aa9.51□□□□□ -0.89
SMARCB1-205ENST00000417137 PRR15LQ9BU68 103 aa9.51□□□□□ -0.89
SMARCB1-205ENST00000417137 A0A0D9SG42 100 aa9.47□□□□□ -0.89
SMARCB1-205ENST00000417137 LINC01558Q9Y6Z2 57 aa9.45□□□□□ -0.9
SMARCB1-205ENST00000417137 CAMK2N1Q7Z7J9 78 aa9.42□□□□□ -0.9
SMARCB1-205ENST00000417137 SMIM26A0A096LP01 95 aa9.4□□□□□ -0.9
SMARCB1-205ENST00000417137 KRTAP5-9P26371 169 aa9.4□□□□□ -0.9
SMARCB1-205ENST00000417137 KRTAP12-2P59991 146 aa9.39□□□□□ -0.91
SMARCB1-205ENST00000417137 SPINT4Q6UDR6 99 aa9.34□□□□□ -0.91
SMARCB1-205ENST00000417137 MDN1Q9NU22 5596 aa9.32□□□□□ -0.92
SMARCB1-205ENST00000417137 KMT2DO14686 5537 aa9.31□□□□□ -0.92
SMARCB1-205ENST00000417137 KRTAP12-1P59990 96 aa9.26□□□□□ -0.93
SMARCB1-205ENST00000417137 PCP4P48539 62 aa9.23□□□□□ -0.93
SMARCB1-205ENST00000417137 A8MU10 97 aa9.22□□□□□ -0.93
SMARCB1-205ENST00000417137 KRTAP10-7P60409 375 aaPredicted RBP9.22□□□□□ -0.93
SMARCB1-205ENST00000417137 KRTAP2-3P0C7H8 128 aa9.2□□□□□ -0.94
SMARCB1-205ENST00000417137 KRTAP10-12P60413 245 aa9.2□□□□□ -0.94
SMARCB1-205ENST00000417137 KRTAP2-4Q9BYR9 128 aa9.2□□□□□ -0.94
SMARCB1-205ENST00000417137 V9GYY9 64 aa9.2□□□□□ -0.94
SMARCB1-205ENST00000417137 KRTAP8-1Q8IUC2 63 aa9.19□□□□□ -0.94
SMARCB1-205ENST00000417137 UQCR11O14957 56 aa9.18□□□□□ -0.94
SMARCB1-205ENST00000417137 KRTAP4-8A0A0G2JLE6 195 aa9.11□□□□□ -0.95
SMARCB1-205ENST00000417137 KRTAP4-8Q9BYQ9 185 aa9.11□□□□□ -0.95
SMARCB1-205ENST00000417137 Q1T7F1 81 aa9.1□□□□□ -0.95
SMARCB1-205ENST00000417137 SPRR2FQ96RM1 72 aa9.08□□□□□ -0.96
SMARCB1-205ENST00000417137 PSPHP1O15172 72 aa9.01□□□□□ -0.97
SMARCB1-205ENST00000417137 RPS28P62857 69 aaKnown RBP9□□□□□ -0.97
SMARCB1-205ENST00000417137 MIR22HGQ0VDD5 57 aa8.99□□□□□ -0.97
SMARCB1-205ENST00000417137 SPRR2EP22531 72 aa8.97□□□□□ -0.97
SMARCB1-205ENST00000417137 SPRR2BP35325 72 aa8.97□□□□□ -0.97
SMARCB1-205ENST00000417137 SPRR2AP35326 72 aa8.97□□□□□ -0.97
SMARCB1-205ENST00000417137 KRTAP2-2Q9BYT5 123 aa8.88□□□□□ -0.99
SMARCB1-205ENST00000417137 KRTAP2-1Q9BYU5 128 aa8.88□□□□□ -0.99
SMARCB1-205ENST00000417137 K7ERS5 55 aa8.82□□□□□ -1
SMARCB1-205ENST00000417137 C10orf95Q9H7T3 257 aa8.82□□□□□ -1
SMARCB1-205ENST00000417137 TNP1P09430 55 aa8.8□□□□□ -1
SMARCB1-205ENST00000417137 LCE1AQ5T7P2 110 aa8.78□□□□□ -1
SMARCB1-205ENST00000417137 A6NED7 52 aa8.76□□□□□ -1.01
SMARCB1-205ENST00000417137 SPRR2DP22532 72 aa8.68□□□□□ -1.02
SMARCB1-205ENST00000417137 KRTAP19-7Q3SYF9 63 aa8.62□□□□□ -1.03
SMARCB1-205ENST00000417137 MT1EP04732 61 aa8.55□□□□□ -1.04
SMARCB1-205ENST00000417137 KRTAP19-5Q3LI72 72 aa8.54□□□□□ -1.04
SMARCB1-205ENST00000417137 LCE3AQ5TA76 89 aa8.53□□□□□ -1.04
SMARCB1-205ENST00000417137 KRTAP25-1Q3LHN0 102 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms