RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 LPAP08519 4548 aa7.31□□□□□ -1.24
LIMS1-204ENST00000409441 HRES1P13985 223 aa7.26□□□□□ -1.25
LIMS1-204ENST00000409441 KRTAP4-11Q9BYQ6 195 aa7.25□□□□□ -1.25
LIMS1-204ENST00000409441 LRP2P98164 4655 aa7.25□□□□□ -1.25
LIMS1-204ENST00000409441 ACYP2P14621 99 aa7.23□□□□□ -1.25
LIMS1-204ENST00000409441 DMAC1Q96GE9 116 aa7.23□□□□□ -1.25
LIMS1-204ENST00000409441 C20orf166-AS1Q96NR2 134 aa7.21□□□□□ -1.26
LIMS1-204ENST00000409441 A8MUU9 505 aa7.2□□□□□ -1.26
LIMS1-204ENST00000409441 IGKV2D-30A0A075B6S6 120 aa7.19□□□□□ -1.26
LIMS1-204ENST00000409441 C7orf65Q6ZTY9 151 aa7.18□□□□□ -1.26
LIMS1-204ENST00000409441 PSPHP1O15172 72 aa7.16□□□□□ -1.26
LIMS1-204ENST00000409441 RPL37P61927 97 aaKnown RBP7.16□□□□□ -1.26
LIMS1-204ENST00000409441 LCE4AQ5TA78 99 aa7.16□□□□□ -1.26
LIMS1-204ENST00000409441 SEC61BP60468 96 aaKnown RBP7.16□□□□□ -1.26
LIMS1-204ENST00000409441 Q75L30 129 aa7.16□□□□□ -1.26
LIMS1-204ENST00000409441 LINC01558Q9Y6Z2 57 aa7.16□□□□□ -1.26
LIMS1-204ENST00000409441 A8MUN3 132 aa7.15□□□□□ -1.27
LIMS1-204ENST00000409441 PRO0628Q9UI54 55 aa7.15□□□□□ -1.27
LIMS1-204ENST00000409441 UBR4Q5T4S7 5183 aa7.14□□□□□ -1.27
LIMS1-204ENST00000409441 Q5VV11 94 aa7.13□□□□□ -1.27
LIMS1-204ENST00000409441 PRR15LQ9BU68 103 aa7.12□□□□□ -1.27
LIMS1-204ENST00000409441 CHKB-CPT1BH3BT56 60 aa7.12□□□□□ -1.27
LIMS1-204ENST00000409441 BRK1Q8WUW1 75 aa7.12□□□□□ -1.27
LIMS1-204ENST00000409441 ATP11AUNQ6ZP68 121 aa7.11□□□□□ -1.27
LIMS1-204ENST00000409441 MUC17Q685J3 4493 aa7.04□□□□□ -1.28
LIMS1-204ENST00000409441 KRTAP4-1Q9BYQ7 146 aa7.02□□□□□ -1.29
LIMS1-204ENST00000409441 RNF213Q63HN8 5207 aa7□□□□□ -1.29
LIMS1-204ENST00000409441 SPINK7P58062 85 aa6.99□□□□□ -1.29
LIMS1-204ENST00000409441 MUC2Q02817 5179 aa6.97□□□□□ -1.29
LIMS1-204ENST00000409441 A6NED7 52 aa6.97□□□□□ -1.29
LIMS1-204ENST00000409441 LCE5AQ5TCM9 118 aa6.97□□□□□ -1.29
LIMS1-204ENST00000409441 KRTAP19-4Q3LI73 84 aa6.96□□□□□ -1.3
LIMS1-204ENST00000409441 KRTAP9-7A8MTY7 169 aa6.94□□□□□ -1.3
LIMS1-204ENST00000409441 SPTSSBQ8NFR3 76 aa6.94□□□□□ -1.3
LIMS1-204ENST00000409441 A0A1B0GU69 56 aa6.93□□□□□ -1.3
LIMS1-204ENST00000409441 CDC42SE1Q9NRR8 79 aa6.92□□□□□ -1.3
LIMS1-204ENST00000409441 COX6B2Q6YFQ2 88 aa6.89□□□□□ -1.31
LIMS1-204ENST00000409441 LCA10Q71F78 164 aa6.89□□□□□ -1.31
LIMS1-204ENST00000409441 KRTAP3-1Q9BYR8 98 aa6.89□□□□□ -1.31
LIMS1-204ENST00000409441 A8MU10 97 aa6.83□□□□□ -1.32
LIMS1-204ENST00000409441 KRTAP5-3Q6L8H2 238 aa6.83□□□□□ -1.32
LIMS1-204ENST00000409441 SEC61GP60059 68 aa6.81□□□□□ -1.32
LIMS1-204ENST00000409441 KRTAP19-2Q3LHN2 52 aa6.79□□□□□ -1.32
LIMS1-204ENST00000409441 UQCR11O14957 56 aa6.78□□□□□ -1.32
LIMS1-204ENST00000409441 SPATA8Q6RVD6 105 aa6.76□□□□□ -1.33
LIMS1-204ENST00000409441 KRTAP9-3Q9BYQ3 159 aa6.76□□□□□ -1.33
LIMS1-204ENST00000409441 RBM12B-AS1Q9P1G2 102 aa6.76□□□□□ -1.33
LIMS1-204ENST00000409441 PMAIP1Q13794 54 aa6.74□□□□□ -1.33
LIMS1-204ENST00000409441 MIR22HGQ0VDD5 57 aa6.72□□□□□ -1.33
LIMS1-204ENST00000409441 FAT4Q6V0I7 4981 aa6.71□□□□□ -1.34
LIMS1-204ENST00000409441 A6NN06 94 aa6.68□□□□□ -1.34
LIMS1-204ENST00000409441 S4R3F8 94 aa6.65□□□□□ -1.34
LIMS1-204ENST00000409441 MT1HP80294 61 aa6.64□□□□□ -1.35
LIMS1-204ENST00000409441 H1FX-AS1Q4G0G2 97 aa6.63□□□□□ -1.35
LIMS1-204ENST00000409441 A0A1B0GU33 70 aa6.62□□□□□ -1.35
LIMS1-204ENST00000409441 KRTAP9-8Q9BYQ0 159 aa6.59□□□□□ -1.35
LIMS1-204ENST00000409441 KTN1-AS1Q86SY8 53 aa6.58□□□□□ -1.36
LIMS1-204ENST00000409441 M0R2T5 61 aa6.57□□□□□ -1.36
LIMS1-204ENST00000409441 FLGP20930 4061 aaPredicted RBP6.56□□□□□ -1.36
LIMS1-204ENST00000409441 H0YAA0 97 aa6.55□□□□□ -1.36
LIMS1-204ENST00000409441 KRTAP10-6P60371 365 aaPredicted RBP6.5□□□□□ -1.37
LIMS1-204ENST00000409441 H3BS24 57 aa6.47□□□□□ -1.37
LIMS1-204ENST00000409441 CSAG1Q6PB30 78 aa6.46□□□□□ -1.38
LIMS1-204ENST00000409441 K7ERS5 55 aa6.39□□□□□ -1.39
LIMS1-204ENST00000409441 ADM2Q7Z4H4 148 aa6.38□□□□□ -1.39
LIMS1-204ENST00000409441 P0C880 135 aa6.37□□□□□ -1.39
LIMS1-204ENST00000409441 KRTAP13-4Q3LI77 160 aa6.35□□□□□ -1.39
LIMS1-204ENST00000409441 M0QZ58 72 aa6.29□□□□□ -1.4
LIMS1-204ENST00000409441 MT2AP02795 61 aa6.29□□□□□ -1.4
LIMS1-204ENST00000409441 PRAC1Q96KF2 57 aa6.26□□□□□ -1.41
LIMS1-204ENST00000409441 A0A0D9SG42 100 aa6.25□□□□□ -1.41
LIMS1-204ENST00000409441 MT1FP04733 61 aa6.25□□□□□ -1.41
LIMS1-204ENST00000409441 KRTAP10-10P60014 251 aa6.25□□□□□ -1.41
LIMS1-204ENST00000409441 ROMO1P60602 79 aa6.16□□□□□ -1.42
LIMS1-204ENST00000409441 KRTAP12-1P59990 96 aa6.14□□□□□ -1.43
LIMS1-204ENST00000409441 R4GN34 69 aa6.14□□□□□ -1.43
LIMS1-204ENST00000409441 KRTAP12-2P59991 146 aa6.13□□□□□ -1.43
LIMS1-204ENST00000409441 SPINT4Q6UDR6 99 aa6.1□□□□□ -1.43
LIMS1-204ENST00000409441 KRTAP25-1Q3LHN0 102 aa6.08□□□□□ -1.44
LIMS1-204ENST00000409441 LINC01554Q52M75 96 aa6.03□□□□□ -1.44
LIMS1-204ENST00000409441 CRIPTQ9P021 101 aa6.03□□□□□ -1.44
LIMS1-204ENST00000409441 SPRR2GQ9BYE4 73 aa5.99□□□□□ -1.45
LIMS1-204ENST00000409441 USH2AO75445 5202 aa5.91□□□□□ -1.46
LIMS1-204ENST00000409441 FSIP2Q5CZC0 6907 aa5.91□□□□□ -1.46
LIMS1-204ENST00000409441 KRTAP19-8Q3LI54 63 aa5.88□□□□□ -1.47
LIMS1-204ENST00000409441 CRCT1Q9UGL9 99 aa5.84□□□□□ -1.47
LIMS1-204ENST00000409441 MT1BP07438 61 aa5.83□□□□□ -1.48
LIMS1-204ENST00000409441 C10orf95Q9H7T3 257 aa5.81□□□□□ -1.48
LIMS1-204ENST00000409441 CAMK2N1Q7Z7J9 78 aa5.78□□□□□ -1.48
LIMS1-204ENST00000409441 SSPOA2VEC9 5147 aa5.77□□□□□ -1.49
LIMS1-204ENST00000409441 PLAC4Q8WY50 150 aa5.74□□□□□ -1.49
LIMS1-204ENST00000409441 KRTAP19-6Q3LI70 58 aa5.73□□□□□ -1.49
LIMS1-204ENST00000409441 KRTAP10-5P60370 271 aa5.62□□□□□ -1.51
LIMS1-204ENST00000409441 PP632Q6XCG6 107 aa5.62□□□□□ -1.51
LIMS1-204ENST00000409441 FCGBPQ9Y6R7 5405 aaPredicted RBP5.59□□□□□ -1.51
LIMS1-204ENST00000409441 TNP1P09430 55 aa5.58□□□□□ -1.52
LIMS1-204ENST00000409441 MT1XP80297 61 aa5.56□□□□□ -1.52
LIMS1-204ENST00000409441 PRO2289Q9P1D8 64 aa5.56□□□□□ -1.52
LIMS1-204ENST00000409441 KRTAP23-1A1A580 65 aa5.55□□□□□ -1.52
LIMS1-204ENST00000409441 A0A0A0MQY5 61 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms