RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 M0R2T5 61 aa9.97□□□□□ -0.81
VSX1-203ENST00000409285 S4R3F8 94 aa9.96□□□□□ -0.82
VSX1-203ENST00000409285 ACYP2P14621 99 aa9.91□□□□□ -0.82
VSX1-203ENST00000409285 LCA10Q71F78 164 aa9.91□□□□□ -0.82
VSX1-203ENST00000409285 KRTAP10-6P60371 365 aaPredicted RBP9.85□□□□□ -0.83
VSX1-203ENST00000409285 LORP23490 312 aaPredicted RBP9.85□□□□□ -0.83
VSX1-203ENST00000409285 KRTAP3-3Q9BYR6 98 aa9.85□□□□□ -0.83
VSX1-203ENST00000409285 COA5Q86WW8 74 aa9.8□□□□□ -0.84
VSX1-203ENST00000409285 CSAG1Q6PB30 78 aa9.79□□□□□ -0.84
VSX1-203ENST00000409285 CHKB-CPT1BH3BT56 60 aa9.78□□□□□ -0.84
VSX1-203ENST00000409285 KRTAP9-2Q9BYQ4 174 aa9.74□□□□□ -0.85
VSX1-203ENST00000409285 SERP1Q9Y6X1 66 aa9.73□□□□□ -0.85
VSX1-203ENST00000409285 KRTAP9-8Q9BYQ0 159 aa9.72□□□□□ -0.85
VSX1-203ENST00000409285 LCE2DQ5TA82 110 aaPredicted RBP9.65□□□□□ -0.87
VSX1-203ENST00000409285 MT2AP02795 61 aa9.64□□□□□ -0.87
VSX1-203ENST00000409285 SPTSSBQ8NFR3 76 aa9.63□□□□□ -0.87
VSX1-203ENST00000409285 H0YAA0 97 aa9.6□□□□□ -0.87
VSX1-203ENST00000409285 MT1FP04733 61 aa9.56□□□□□ -0.88
VSX1-203ENST00000409285 RPS28P62857 69 aaKnown RBP9.56□□□□□ -0.88
VSX1-203ENST00000409285 KRTAP10-10P60014 251 aa9.5□□□□□ -0.89
VSX1-203ENST00000409285 SMIM26A0A096LP01 95 aa9.43□□□□□ -0.9
VSX1-203ENST00000409285 ADM2Q7Z4H4 148 aa9.42□□□□□ -0.9
VSX1-203ENST00000409285 KRTAP9-3Q9BYQ3 159 aa9.4□□□□□ -0.91
VSX1-203ENST00000409285 KRTAP3-2Q9BYR7 98 aa9.37□□□□□ -0.91
VSX1-203ENST00000409285 FSIP2Q5CZC0 6907 aa9.37□□□□□ -0.91
VSX1-203ENST00000409285 CRIPTQ9P021 101 aa9.35□□□□□ -0.91
VSX1-203ENST00000409285 LINC01558Q9Y6Z2 57 aa9.32□□□□□ -0.92
VSX1-203ENST00000409285 KRTAP9-6A0A140TA67 174 aa9.31□□□□□ -0.92
VSX1-203ENST00000409285 P0C880 135 aa9.31□□□□□ -0.92
VSX1-203ENST00000409285 SEC61GP60059 68 aa9.31□□□□□ -0.92
VSX1-203ENST00000409285 V9GYY9 64 aa9.3□□□□□ -0.92
VSX1-203ENST00000409285 Q1T7F1 81 aa9.29□□□□□ -0.92
VSX1-203ENST00000409285 A0A1B0GU69 56 aa9.28□□□□□ -0.92
VSX1-203ENST00000409285 CRCT1Q9UGL9 99 aa9.27□□□□□ -0.93
VSX1-203ENST00000409285 SPRR2GQ9BYE4 73 aa9.26□□□□□ -0.93
VSX1-203ENST00000409285 KRTAP19-1Q8IUB9 90 aa9.24□□□□□ -0.93
VSX1-203ENST00000409285 PRR15LQ9BU68 103 aa9.24□□□□□ -0.93
VSX1-203ENST00000409285 USH2AO75445 5202 aa9.2□□□□□ -0.94
VSX1-203ENST00000409285 LCE2BO14633 110 aa9.19□□□□□ -0.94
VSX1-203ENST00000409285 PSPHP1O15172 72 aa9.18□□□□□ -0.94
VSX1-203ENST00000409285 R4GN34 69 aa9.15□□□□□ -0.94
VSX1-203ENST00000409285 M0QZ58 72 aa9.09□□□□□ -0.95
VSX1-203ENST00000409285 KRTAP19-8Q3LI54 63 aa9.08□□□□□ -0.96
VSX1-203ENST00000409285 A0A1B0GU33 70 aa9.07□□□□□ -0.96
VSX1-203ENST00000409285 Q5VV11 94 aa9.07□□□□□ -0.96
VSX1-203ENST00000409285 SSPOA2VEC9 5147 aa9.07□□□□□ -0.96
VSX1-203ENST00000409285 KRTAP13-4Q3LI77 160 aa8.97□□□□□ -0.97
VSX1-203ENST00000409285 MT1BP07438 61 aa8.96□□□□□ -0.97
VSX1-203ENST00000409285 UQCR11O14957 56 aa8.95□□□□□ -0.98
VSX1-203ENST00000409285 SPATA8Q6RVD6 105 aa8.93□□□□□ -0.98
VSX1-203ENST00000409285 A6NED7 52 aa8.91□□□□□ -0.98
VSX1-203ENST00000409285 LINC01554Q52M75 96 aa8.88□□□□□ -0.99
VSX1-203ENST00000409285 A6NN06 94 aa8.87□□□□□ -0.99
VSX1-203ENST00000409285 MIR22HGQ0VDD5 57 aa8.84□□□□□ -0.99
VSX1-203ENST00000409285 A0A0D9SG42 100 aa8.81□□□□□ -1
VSX1-203ENST00000409285 KRTAP19-6Q3LI70 58 aa8.8□□□□□ -1
VSX1-203ENST00000409285 FCGBPQ9Y6R7 5405 aaPredicted RBP8.79□□□□□ -1
VSX1-203ENST00000409285 A8MU10 97 aa8.77□□□□□ -1
VSX1-203ENST00000409285 PLAC4Q8WY50 150 aa8.77□□□□□ -1
VSX1-203ENST00000409285 CDC42SE1Q9NRR8 79 aa8.69□□□□□ -1.02
VSX1-203ENST00000409285 KRTAP12-1P59990 96 aa8.63□□□□□ -1.03
VSX1-203ENST00000409285 KRTAP10-5P60370 271 aa8.63□□□□□ -1.03
VSX1-203ENST00000409285 BRK1Q8WUW1 75 aa8.63□□□□□ -1.03
VSX1-203ENST00000409285 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.61□□□□□ -1.03
VSX1-203ENST00000409285 SPINT4Q6UDR6 99 aa8.6□□□□□ -1.03
VSX1-203ENST00000409285 KRTAP12-2P59991 146 aa8.57□□□□□ -1.04
VSX1-203ENST00000409285 MT1XP80297 61 aa8.57□□□□□ -1.04
VSX1-203ENST00000409285 PRO2289Q9P1D8 64 aa8.57□□□□□ -1.04
VSX1-203ENST00000409285 MACF1Q9UPN3 7388 aaKnown RBP8.52□□□□□ -1.05
VSX1-203ENST00000409285 K7ERS5 55 aa8.51□□□□□ -1.05
VSX1-203ENST00000409285 CAMK2N1Q7Z7J9 78 aa8.49□□□□□ -1.05
VSX1-203ENST00000409285 KRTAP9-7A8MTY7 169 aa8.41□□□□□ -1.06
VSX1-203ENST00000409285 SYNE2Q8WXH0 6885 aaKnown RBP8.38□□□□□ -1.07
VSX1-203ENST00000409285 PRO0628Q9UI54 55 aa8.29□□□□□ -1.08
VSX1-203ENST00000409285 KRTAP10-7P60409 375 aaPredicted RBP8.17□□□□□ -1.1
VSX1-203ENST00000409285 KRTAP10-12P60413 245 aa8.17□□□□□ -1.1
VSX1-203ENST00000409285 C10orf95Q9H7T3 257 aa8.17□□□□□ -1.1
VSX1-203ENST00000409285 KRTAP6-3Q3LI67 103 aa8.15□□□□□ -1.1
VSX1-203ENST00000409285 PMAIP1Q13794 54 aa8.13□□□□□ -1.11
VSX1-203ENST00000409285 ROMO1P60602 79 aa8.09□□□□□ -1.11
VSX1-203ENST00000409285 KMT2DO14686 5537 aa8.03□□□□□ -1.12
VSX1-203ENST00000409285 TNP1P09430 55 aa8.03□□□□□ -1.12
VSX1-203ENST00000409285 KRTAP4-8A0A0G2JLE6 195 aa7.94□□□□□ -1.14
VSX1-203ENST00000409285 KRTAP4-8Q9BYQ9 185 aa7.94□□□□□ -1.14
VSX1-203ENST00000409285 KRTAP25-1Q3LHN0 102 aa7.94□□□□□ -1.14
VSX1-203ENST00000409285 MUC12Q9UKN1 5478 aa7.92□□□□□ -1.14
VSX1-203ENST00000409285 KRTAP5-9P26371 169 aa7.91□□□□□ -1.14
VSX1-203ENST00000409285 KRTAP8-1Q8IUC2 63 aa7.9□□□□□ -1.14
VSX1-203ENST00000409285 NEBP20929 6669 aa7.81□□□□□ -1.16
VSX1-203ENST00000409285 SPRR2FQ96RM1 72 aa7.76□□□□□ -1.17
VSX1-203ENST00000409285 LCE3AQ5TA76 89 aa7.75□□□□□ -1.17
VSX1-203ENST00000409285 KRTAP23-1A1A580 65 aa7.72□□□□□ -1.17
VSX1-203ENST00000409285 KTN1-AS1Q86SY8 53 aa7.72□□□□□ -1.17
VSX1-203ENST00000409285 MDN1Q9NU22 5596 aa7.72□□□□□ -1.17
VSX1-203ENST00000409285 KRTAP19-7Q3SYF9 63 aa7.66□□□□□ -1.18
VSX1-203ENST00000409285 PRAC1Q96KF2 57 aa7.65□□□□□ -1.18
VSX1-203ENST00000409285 KRTAP19-5Q3LI72 72 aa7.6□□□□□ -1.19
VSX1-203ENST00000409285 PP632Q6XCG6 107 aa7.58□□□□□ -1.2
VSX1-203ENST00000409285 SPRR2EP22531 72 aa7.57□□□□□ -1.2
VSX1-203ENST00000409285 SPRR2BP35325 72 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms