RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 Q5VV11 94 aa7.1□□□□□ -1.27
SMARCB1-203ENST00000407082 IGKV2D-30A0A075B6S6 120 aa7.09□□□□□ -1.27
SMARCB1-203ENST00000407082 FSIP2Q5CZC0 6907 aa7.07□□□□□ -1.28
SMARCB1-203ENST00000407082 LOC100996750A0A140TA64 210 aa7.07□□□□□ -1.28
SMARCB1-203ENST00000407082 KRTAP4-6Q9BYQ5 205 aa7.07□□□□□ -1.28
SMARCB1-203ENST00000407082 CRCT1Q9UGL9 99 aa7.07□□□□□ -1.28
SMARCB1-203ENST00000407082 A8MUU9 505 aa7.06□□□□□ -1.28
SMARCB1-203ENST00000407082 LORP23490 312 aaPredicted RBP7.06□□□□□ -1.28
SMARCB1-203ENST00000407082 C20orf166-AS1Q96NR2 134 aa7.06□□□□□ -1.28
SMARCB1-203ENST00000407082 A6NED7 52 aa7.02□□□□□ -1.29
SMARCB1-203ENST00000407082 SPTSSBQ8NFR3 76 aa7.02□□□□□ -1.29
SMARCB1-203ENST00000407082 C9orf92A6NGG3 77 aa6.97□□□□□ -1.29
SMARCB1-203ENST00000407082 CDC42SE1Q9NRR8 79 aa6.96□□□□□ -1.3
SMARCB1-203ENST00000407082 A0A1B0GU69 56 aa6.95□□□□□ -1.3
SMARCB1-203ENST00000407082 ATP11AUNQ6ZP68 121 aa6.94□□□□□ -1.3
SMARCB1-203ENST00000407082 SEC61GP60059 68 aa6.9□□□□□ -1.3
SMARCB1-203ENST00000407082 TPRXLQ17RH7 258 aa6.9□□□□□ -1.3
SMARCB1-203ENST00000407082 SPINK7P58062 85 aa6.87□□□□□ -1.31
SMARCB1-203ENST00000407082 LCA10Q71F78 164 aa6.85□□□□□ -1.31
SMARCB1-203ENST00000407082 PMAIP1Q13794 54 aa6.84□□□□□ -1.31
SMARCB1-203ENST00000407082 UQCR11O14957 56 aa6.83□□□□□ -1.32
SMARCB1-203ENST00000407082 MUC17Q685J3 4493 aa6.81□□□□□ -1.32
SMARCB1-203ENST00000407082 RPL37P61927 97 aaKnown RBP6.8□□□□□ -1.32
SMARCB1-203ENST00000407082 COX6B2Q6YFQ2 88 aa6.8□□□□□ -1.32
SMARCB1-203ENST00000407082 XP32Q5T750 250 aa6.77□□□□□ -1.33
SMARCB1-203ENST00000407082 SPATA8Q6RVD6 105 aa6.77□□□□□ -1.33
SMARCB1-203ENST00000407082 MIR22HGQ0VDD5 57 aa6.75□□□□□ -1.33
SMARCB1-203ENST00000407082 KRTAP4-1Q9BYQ7 146 aa6.75□□□□□ -1.33
SMARCB1-203ENST00000407082 A8MU10 97 aa6.71□□□□□ -1.34
SMARCB1-203ENST00000407082 SEC61BP60468 96 aaKnown RBP6.71□□□□□ -1.34
SMARCB1-203ENST00000407082 KRTAP3-1Q9BYR8 98 aa6.69□□□□□ -1.34
SMARCB1-203ENST00000407082 A6NN06 94 aa6.68□□□□□ -1.34
SMARCB1-203ENST00000407082 KTN1-AS1Q86SY8 53 aa6.68□□□□□ -1.34
SMARCB1-203ENST00000407082 KRTAP9-7A8MTY7 169 aa6.66□□□□□ -1.34
SMARCB1-203ENST00000407082 A0A1B0GU33 70 aa6.61□□□□□ -1.35
SMARCB1-203ENST00000407082 MT1HP80294 61 aa6.61□□□□□ -1.35
SMARCB1-203ENST00000407082 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.58□□□□□ -1.36
SMARCB1-203ENST00000407082 H1FX-AS1Q4G0G2 97 aa6.58□□□□□ -1.36
SMARCB1-203ENST00000407082 M0R2T5 61 aa6.57□□□□□ -1.36
SMARCB1-203ENST00000407082 S4R3F8 94 aa6.57□□□□□ -1.36
SMARCB1-203ENST00000407082 KRTAP10-6P60371 365 aaPredicted RBP6.56□□□□□ -1.36
SMARCB1-203ENST00000407082 RBM12B-AS1Q9P1G2 102 aa6.56□□□□□ -1.36
SMARCB1-203ENST00000407082 KRTAP19-2Q3LHN2 52 aa6.53□□□□□ -1.36
SMARCB1-203ENST00000407082 K7ERS5 55 aa6.52□□□□□ -1.37
SMARCB1-203ENST00000407082 H0YAA0 97 aa6.45□□□□□ -1.38
SMARCB1-203ENST00000407082 KRTAP4-8Q9BYQ9 185 aa6.44□□□□□ -1.38
SMARCB1-203ENST00000407082 CSAG1Q6PB30 78 aa6.42□□□□□ -1.38
SMARCB1-203ENST00000407082 SSPOA2VEC9 5147 aa6.33□□□□□ -1.4
SMARCB1-203ENST00000407082 USH2AO75445 5202 aa6.29□□□□□ -1.4
SMARCB1-203ENST00000407082 ADM2Q7Z4H4 148 aa6.29□□□□□ -1.4
SMARCB1-203ENST00000407082 M0QZ58 72 aa6.28□□□□□ -1.4
SMARCB1-203ENST00000407082 FCGBPQ9Y6R7 5405 aaPredicted RBP6.26□□□□□ -1.41
SMARCB1-203ENST00000407082 SYNE2Q8WXH0 6885 aaKnown RBP6.23□□□□□ -1.41
SMARCB1-203ENST00000407082 PRAC1Q96KF2 57 aa6.23□□□□□ -1.41
SMARCB1-203ENST00000407082 FLGP20930 4061 aaPredicted RBP6.23□□□□□ -1.41
SMARCB1-203ENST00000407082 P0C880 135 aa6.22□□□□□ -1.41
SMARCB1-203ENST00000407082 KRTAP19-1Q8IUB9 90 aa6.21□□□□□ -1.42
SMARCB1-203ENST00000407082 ROMO1P60602 79 aa6.19□□□□□ -1.42
SMARCB1-203ENST00000407082 A0A0D9SG42 100 aa6.18□□□□□ -1.42
SMARCB1-203ENST00000407082 MACF1Q9UPN3 7388 aaKnown RBP6.17□□□□□ -1.42
SMARCB1-203ENST00000407082 KRTAP13-4Q3LI77 160 aa6.17□□□□□ -1.42
SMARCB1-203ENST00000407082 KRTAP9-8Q9BYQ0 159 aa6.16□□□□□ -1.42
SMARCB1-203ENST00000407082 LINC01554Q52M75 96 aa6.14□□□□□ -1.43
SMARCB1-203ENST00000407082 KRTAP25-1Q3LHN0 102 aa6.12□□□□□ -1.43
SMARCB1-203ENST00000407082 KRTAP4-12Q9BQ66 201 aa6.12□□□□□ -1.43
SMARCB1-203ENST00000407082 R4GN34 69 aa6.09□□□□□ -1.43
SMARCB1-203ENST00000407082 LCE3BQ5TA77 95 aa6.08□□□□□ -1.44
SMARCB1-203ENST00000407082 SPINT4Q6UDR6 99 aa6.07□□□□□ -1.44
SMARCB1-203ENST00000407082 KRTAP9-9Q9BYP9 154 aa6.06□□□□□ -1.44
SMARCB1-203ENST00000407082 KRTAP9-4Q9BYQ2 154 aa6.06□□□□□ -1.44
SMARCB1-203ENST00000407082 MT2AP02795 61 aa6.04□□□□□ -1.44
SMARCB1-203ENST00000407082 KRTAP12-1P59990 96 aa6.04□□□□□ -1.44
SMARCB1-203ENST00000407082 KRTAP10-10P60014 251 aa6.02□□□□□ -1.45
SMARCB1-203ENST00000407082 KRTAP12-2P59991 146 aa6.01□□□□□ -1.45
SMARCB1-203ENST00000407082 MT1FP04733 61 aa6□□□□□ -1.45
SMARCB1-203ENST00000407082 CRIPTQ9P021 101 aa6□□□□□ -1.45
SMARCB1-203ENST00000407082 KRTAP6-3Q3LI67 103 aa5.98□□□□□ -1.45
SMARCB1-203ENST00000407082 KRTAP9-3Q9BYQ3 159 aa5.98□□□□□ -1.45
SMARCB1-203ENST00000407082 KRTAP4-8A0A0G2JLE6 195 aa5.94□□□□□ -1.46
SMARCB1-203ENST00000407082 KRTAP19-6Q3LI70 58 aa5.92□□□□□ -1.46
SMARCB1-203ENST00000407082 NEBP20929 6669 aa5.86□□□□□ -1.47
SMARCB1-203ENST00000407082 KRTAP20-1Q3LI63 56 aa5.81□□□□□ -1.48
SMARCB1-203ENST00000407082 CAMK2N1Q7Z7J9 78 aa5.76□□□□□ -1.49
SMARCB1-203ENST00000407082 KRTAP4-7Q9BYR0 210 aa5.73□□□□□ -1.49
SMARCB1-203ENST00000407082 C10orf95Q9H7T3 257 aa5.72□□□□□ -1.49
SMARCB1-203ENST00000407082 LCE1DQ5T752 114 aa5.69□□□□□ -1.5
SMARCB1-203ENST00000407082 PP632Q6XCG6 107 aa5.69□□□□□ -1.5
SMARCB1-203ENST00000407082 MUC12Q9UKN1 5478 aa5.67□□□□□ -1.5
SMARCB1-203ENST00000407082 PLAC4Q8WY50 150 aa5.63□□□□□ -1.51
SMARCB1-203ENST00000407082 SPRR2GQ9BYE4 73 aa5.6□□□□□ -1.51
SMARCB1-203ENST00000407082 KRTAP23-1A1A580 65 aa5.58□□□□□ -1.52
SMARCB1-203ENST00000407082 TNP1P09430 55 aa5.58□□□□□ -1.52
SMARCB1-203ENST00000407082 KRTAP4-9Q9BYQ8 210 aa5.58□□□□□ -1.52
SMARCB1-203ENST00000407082 KRTAP4-2Q9BYR5 136 aa5.53□□□□□ -1.52
SMARCB1-203ENST00000407082 KRTAP2-3P0C7H8 128 aa5.52□□□□□ -1.53
SMARCB1-203ENST00000407082 KRTAP2-4Q9BYR9 128 aa5.52□□□□□ -1.53
SMARCB1-203ENST00000407082 KRTAP19-8Q3LI54 63 aa5.48□□□□□ -1.53
SMARCB1-203ENST00000407082 KRTAP15-1Q3LI76 137 aa5.47□□□□□ -1.53
SMARCB1-203ENST00000407082 KMT2DO14686 5537 aa5.46□□□□□ -1.53
SMARCB1-203ENST00000407082 LCE4AQ5TA78 99 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 940 ms