RNA–Protein interactions for RNA: ENST00000397760.8

PDLIM2-204, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-204ENST00000397760 LPAP08519 4548 aa10.34□□□□□ -0.75
PDLIM2-204ENST00000397760 RPL37P61927 97 aaKnown RBP10.33□□□□□ -0.76
PDLIM2-204ENST00000397760 A0A1B0GU69 56 aa10.32□□□□□ -0.76
PDLIM2-204ENST00000397760 A6NN06 94 aa10.31□□□□□ -0.76
PDLIM2-204ENST00000397760 KTN1-AS1Q86SY8 53 aa10.28□□□□□ -0.76
PDLIM2-204ENST00000397760 HMCN2Q8NDA2 5059 aa10.24□□□□□ -0.77
PDLIM2-204ENST00000397760 LRP2P98164 4655 aa10.21□□□□□ -0.77
PDLIM2-204ENST00000397760 SPATA8Q6RVD6 105 aa10.19□□□□□ -0.78
PDLIM2-204ENST00000397760 UQCR11O14957 56 aa10.17□□□□□ -0.78
PDLIM2-204ENST00000397760 SEC61BP60468 96 aaKnown RBP10.12□□□□□ -0.79
PDLIM2-204ENST00000397760 SEC61GP60059 68 aa10.1□□□□□ -0.79
PDLIM2-204ENST00000397760 MIR22HGQ0VDD5 57 aa10.1□□□□□ -0.79
PDLIM2-204ENST00000397760 MUC17Q685J3 4493 aa10.01□□□□□ -0.81
PDLIM2-204ENST00000397760 KRTAP3-1Q9BYR8 98 aa9.95□□□□□ -0.82
PDLIM2-204ENST00000397760 RBM12B-AS1Q9P1G2 102 aa9.92□□□□□ -0.82
PDLIM2-204ENST00000397760 KRTAP4-1Q9BYQ7 146 aa9.91□□□□□ -0.82
PDLIM2-204ENST00000397760 COX6B2Q6YFQ2 88 aa9.89□□□□□ -0.83
PDLIM2-204ENST00000397760 UBR4Q5T4S7 5183 aa9.79□□□□□ -0.84
PDLIM2-204ENST00000397760 A0A1B0GU33 70 aa9.77□□□□□ -0.84
PDLIM2-204ENST00000397760 H0YAA0 97 aa9.75□□□□□ -0.85
PDLIM2-204ENST00000397760 H1FX-AS1Q4G0G2 97 aa9.75□□□□□ -0.85
PDLIM2-204ENST00000397760 MUC2Q02817 5179 aa9.73□□□□□ -0.85
PDLIM2-204ENST00000397760 RNF213Q63HN8 5207 aa9.72□□□□□ -0.85
PDLIM2-204ENST00000397760 PRAC1Q96KF2 57 aa9.66□□□□□ -0.86
PDLIM2-204ENST00000397760 ADM2Q7Z4H4 148 aa9.64□□□□□ -0.87
PDLIM2-204ENST00000397760 KRTAP19-2Q3LHN2 52 aa9.59□□□□□ -0.87
PDLIM2-204ENST00000397760 KRTAP3-3Q9BYR6 98 aa9.56□□□□□ -0.88
PDLIM2-204ENST00000397760 K7ERS5 55 aa9.53□□□□□ -0.88
PDLIM2-204ENST00000397760 S4R3F8 94 aa9.51□□□□□ -0.89
PDLIM2-204ENST00000397760 LINC01554Q52M75 96 aa9.49□□□□□ -0.89
PDLIM2-204ENST00000397760 KRTAP10-6P60371 365 aaPredicted RBP9.47□□□□□ -0.89
PDLIM2-204ENST00000397760 CSAG1Q6PB30 78 aa9.47□□□□□ -0.89
PDLIM2-204ENST00000397760 LCE2CQ5TA81 110 aa9.45□□□□□ -0.9
PDLIM2-204ENST00000397760 KRTAP3-2Q9BYR7 98 aa9.41□□□□□ -0.9
PDLIM2-204ENST00000397760 FLGP20930 4061 aaPredicted RBP9.38□□□□□ -0.91
PDLIM2-204ENST00000397760 FAT4Q6V0I7 4981 aa9.35□□□□□ -0.91
PDLIM2-204ENST00000397760 KRTAP25-1Q3LHN0 102 aa9.32□□□□□ -0.92
PDLIM2-204ENST00000397760 MT1HP80294 61 aa9.28□□□□□ -0.92
PDLIM2-204ENST00000397760 KRTAP13-4Q3LI77 160 aa9.28□□□□□ -0.92
PDLIM2-204ENST00000397760 ROMO1P60602 79 aa9.24□□□□□ -0.93
PDLIM2-204ENST00000397760 P0C880 135 aa9.22□□□□□ -0.93
PDLIM2-204ENST00000397760 M0R2T5 61 aa9.2□□□□□ -0.94
PDLIM2-204ENST00000397760 A0A0D9SG42 100 aa9.15□□□□□ -0.94
PDLIM2-204ENST00000397760 M0QZ58 72 aa9.12□□□□□ -0.95
PDLIM2-204ENST00000397760 LCE2AQ5TA79 106 aaPredicted RBP9.02□□□□□ -0.97
PDLIM2-204ENST00000397760 KRTAP12-1P59990 96 aa9.01□□□□□ -0.97
PDLIM2-204ENST00000397760 KRTAP12-2P59991 146 aa9□□□□□ -0.97
PDLIM2-204ENST00000397760 CRIPTQ9P021 101 aa8.95□□□□□ -0.98
PDLIM2-204ENST00000397760 LORP23490 312 aaPredicted RBP8.91□□□□□ -0.98
PDLIM2-204ENST00000397760 KRTAP9-8Q9BYQ0 159 aa8.91□□□□□ -0.98
PDLIM2-204ENST00000397760 SPINT4Q6UDR6 99 aa8.9□□□□□ -0.98
PDLIM2-204ENST00000397760 MT2AP02795 61 aa8.87□□□□□ -0.99
PDLIM2-204ENST00000397760 MT1FP04733 61 aa8.82□□□□□ -1
PDLIM2-204ENST00000397760 KRTAP10-10P60014 251 aa8.82□□□□□ -1
PDLIM2-204ENST00000397760 R4GN34 69 aa8.8□□□□□ -1
PDLIM2-204ENST00000397760 C10orf95Q9H7T3 257 aa8.71□□□□□ -1.01
PDLIM2-204ENST00000397760 KRTAP19-1Q8IUB9 90 aa8.6□□□□□ -1.03
PDLIM2-204ENST00000397760 SPRR2GQ9BYE4 73 aa8.6□□□□□ -1.03
PDLIM2-204ENST00000397760 KRTAP9-3Q9BYQ3 159 aa8.6□□□□□ -1.03
PDLIM2-204ENST00000397760 KRTAP15-1Q3LI76 137 aa8.46□□□□□ -1.06
PDLIM2-204ENST00000397760 H3BS24 57 aa8.41□□□□□ -1.06
PDLIM2-204ENST00000397760 KRTAP19-8Q3LI54 63 aa8.4□□□□□ -1.07
PDLIM2-204ENST00000397760 LCE2BO14633 110 aa8.38□□□□□ -1.07
PDLIM2-204ENST00000397760 PP632Q6XCG6 107 aa8.33□□□□□ -1.08
PDLIM2-204ENST00000397760 CAMK2N1Q7Z7J9 78 aa8.33□□□□□ -1.08
PDLIM2-204ENST00000397760 MT1BP07438 61 aa8.31□□□□□ -1.08
PDLIM2-204ENST00000397760 PLAC4Q8WY50 150 aa8.31□□□□□ -1.08
PDLIM2-204ENST00000397760 LCE2DQ5TA82 110 aaPredicted RBP8.26□□□□□ -1.09
PDLIM2-204ENST00000397760 USH2AO75445 5202 aa8.22□□□□□ -1.09
PDLIM2-204ENST00000397760 KRTAP23-1A1A580 65 aa8.16□□□□□ -1.1
PDLIM2-204ENST00000397760 NDUFAF8A1L188 74 aa8.12□□□□□ -1.11
PDLIM2-204ENST00000397760 TNP1P09430 55 aa8.09□□□□□ -1.11
PDLIM2-204ENST00000397760 KRTAP9-2Q9BYQ4 174 aa8.03□□□□□ -1.12
PDLIM2-204ENST00000397760 MT1XP80297 61 aa8.01□□□□□ -1.13
PDLIM2-204ENST00000397760 KRTAP10-5P60370 271 aa7.99□□□□□ -1.13
PDLIM2-204ENST00000397760 FSIP2Q5CZC0 6907 aa7.96□□□□□ -1.13
PDLIM2-204ENST00000397760 SSPOA2VEC9 5147 aa7.96□□□□□ -1.13
PDLIM2-204ENST00000397760 PRO2289Q9P1D8 64 aa7.94□□□□□ -1.14
PDLIM2-204ENST00000397760 KRTAP19-6Q3LI70 58 aa7.91□□□□□ -1.14
PDLIM2-204ENST00000397760 LUZP6Q538Z0 58 aa7.79□□□□□ -1.16
PDLIM2-204ENST00000397760 CRCT1Q9UGL9 99 aa7.73□□□□□ -1.17
PDLIM2-204ENST00000397760 SPRR5A0A1B0GTR4 108 aa7.69□□□□□ -1.18
PDLIM2-204ENST00000397760 KRTAP10-7P60409 375 aaPredicted RBP7.68□□□□□ -1.18
PDLIM2-204ENST00000397760 FCGBPQ9Y6R7 5405 aaPredicted RBP7.67□□□□□ -1.18
PDLIM2-204ENST00000397760 KRTAP10-12P60413 245 aa7.59□□□□□ -1.19
PDLIM2-204ENST00000397760 LCE3AQ5TA76 89 aa7.57□□□□□ -1.2
PDLIM2-204ENST00000397760 KRTAP8-1Q8IUC2 63 aa7.51□□□□□ -1.21
PDLIM2-204ENST00000397760 KRTAP9-6A0A140TA67 174 aa7.47□□□□□ -1.21
PDLIM2-204ENST00000397760 KMT2DO14686 5537 aa7.43□□□□□ -1.22
PDLIM2-204ENST00000397760 KRTAP4-8A0A0G2JLE6 195 aa7.43□□□□□ -1.22
PDLIM2-204ENST00000397760 KRTAP4-8Q9BYQ9 185 aa7.43□□□□□ -1.22
PDLIM2-204ENST00000397760 A0A0A0MQY5 61 aa7.36□□□□□ -1.23
PDLIM2-204ENST00000397760 MACF1Q9UPN3 7388 aaKnown RBP7.3□□□□□ -1.24
PDLIM2-204ENST00000397760 KRTAP12-3P60328 96 aa7.27□□□□□ -1.25
PDLIM2-204ENST00000397760 KRTAP19-5Q3LI72 72 aa7.2□□□□□ -1.26
PDLIM2-204ENST00000397760 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.15□□□□□ -1.26
PDLIM2-204ENST00000397760 KRTAP19-7Q3SYF9 63 aa7.14□□□□□ -1.27
PDLIM2-204ENST00000397760 SYNE2Q8WXH0 6885 aaKnown RBP7.09□□□□□ -1.27
PDLIM2-204ENST00000397760 MT1EP04732 61 aa7.03□□□□□ -1.28
PDLIM2-204ENST00000397760 SPRR2FQ96RM1 72 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms