RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 SMIM20Q8N5G0 67 aa6.24□□□□□ -1.41
VPS28-202ENST00000377348 CSAG1Q6PB30 78 aa6.23□□□□□ -1.41
VPS28-202ENST00000377348 SERP2Q8N6R1 65 aa6.23□□□□□ -1.41
VPS28-202ENST00000377348 KRTAP3-3Q9BYR6 98 aa6.23□□□□□ -1.41
VPS28-202ENST00000377348 H3BPC8 53 aa6.19□□□□□ -1.42
VPS28-202ENST00000377348 COX7CP15954 63 aa6.17□□□□□ -1.42
VPS28-202ENST00000377348 ANAPC13Q9BS18 74 aa6.17□□□□□ -1.42
VPS28-202ENST00000377348 A8MUN3 132 aa6.15□□□□□ -1.42
VPS28-202ENST00000377348 C20orf197Q8N268 126 aa6.12□□□□□ -1.43
VPS28-202ENST00000377348 CYSTM1Q9H1C7 97 aa6.12□□□□□ -1.43
VPS28-202ENST00000377348 NDUFC1O43677 76 aa6.11□□□□□ -1.43
VPS28-202ENST00000377348 SNURFQ9Y675 71 aa6.11□□□□□ -1.43
VPS28-202ENST00000377348 CCDC179H3BU77 68 aa6.1□□□□□ -1.43
VPS28-202ENST00000377348 KRTAP19-1Q8IUB9 90 aa6.09□□□□□ -1.43
VPS28-202ENST00000377348 DMAC1Q96GE9 116 aa6.07□□□□□ -1.44
VPS28-202ENST00000377348 FCGBPQ9Y6R7 5405 aaPredicted RBP6.04□□□□□ -1.44
VPS28-202ENST00000377348 H7BZZ5 65 aa6.02□□□□□ -1.45
VPS28-202ENST00000377348 SPRR2GQ9BYE4 73 aa6□□□□□ -1.45
VPS28-202ENST00000377348 H0YAA0 97 aa5.99□□□□□ -1.45
VPS28-202ENST00000377348 PCP4P48539 62 aa5.99□□□□□ -1.45
VPS28-202ENST00000377348 KRTAP19-6Q3LI70 58 aa5.99□□□□□ -1.45
VPS28-202ENST00000377348 ADM2Q7Z4H4 148 aa5.98□□□□□ -1.45
VPS28-202ENST00000377348 MT1BP07438 61 aa5.95□□□□□ -1.46
VPS28-202ENST00000377348 ACYP2P14621 99 aa5.94□□□□□ -1.46
VPS28-202ENST00000377348 KRTAP19-8Q3LI54 63 aa5.94□□□□□ -1.46
VPS28-202ENST00000377348 SPANXA2-OT1Q8N9U9 137 aa5.94□□□□□ -1.46
VPS28-202ENST00000377348 CRIPTQ9P021 101 aa5.94□□□□□ -1.46
VPS28-202ENST00000377348 Q5VV11 94 aa5.92□□□□□ -1.46
VPS28-202ENST00000377348 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.91□□□□□ -1.46
VPS28-202ENST00000377348 P0C880 135 aa5.88□□□□□ -1.47
VPS28-202ENST00000377348 KRTAP3-2Q9BYR7 98 aa5.86□□□□□ -1.47
VPS28-202ENST00000377348 CHKB-CPT1BH3BT56 60 aa5.85□□□□□ -1.47
VPS28-202ENST00000377348 TMEM258P61165 79 aa5.84□□□□□ -1.47
VPS28-202ENST00000377348 MACF1Q9UPN3 7388 aaKnown RBP5.81□□□□□ -1.48
VPS28-202ENST00000377348 SPTSSBQ8NFR3 76 aa5.81□□□□□ -1.48
VPS28-202ENST00000377348 A6NN06 94 aa5.79□□□□□ -1.48
VPS28-202ENST00000377348 ATP5EP56381 51 aaPredicted RBP5.79□□□□□ -1.48
VPS28-202ENST00000377348 R4GN34 69 aa5.79□□□□□ -1.48
VPS28-202ENST00000377348 KRTAP9-7A8MTY7 169 aa5.78□□□□□ -1.48
VPS28-202ENST00000377348 M0QZ58 72 aa5.78□□□□□ -1.48
VPS28-202ENST00000377348 COA5Q86WW8 74 aa5.76□□□□□ -1.49
VPS28-202ENST00000377348 SYNE2Q8WXH0 6885 aaKnown RBP5.75□□□□□ -1.49
VPS28-202ENST00000377348 KRTAP10-5P60370 271 aa5.75□□□□□ -1.49
VPS28-202ENST00000377348 LINC01554Q52M75 96 aa5.7□□□□□ -1.5
VPS28-202ENST00000377348 PLAC4Q8WY50 150 aa5.67□□□□□ -1.5
VPS28-202ENST00000377348 SERP1Q9Y6X1 66 aa5.65□□□□□ -1.5
VPS28-202ENST00000377348 MT1XP80297 61 aa5.62□□□□□ -1.51
VPS28-202ENST00000377348 KRTAP13-4Q3LI77 160 aa5.58□□□□□ -1.52
VPS28-202ENST00000377348 KRTAP6-3Q3LI67 103 aa5.57□□□□□ -1.52
VPS28-202ENST00000377348 PRO2289Q9P1D8 64 aa5.57□□□□□ -1.52
VPS28-202ENST00000377348 RPS28P62857 69 aaKnown RBP5.56□□□□□ -1.52
VPS28-202ENST00000377348 SEC61GP60059 68 aa5.53□□□□□ -1.52
VPS28-202ENST00000377348 KMT2DO14686 5537 aa5.48□□□□□ -1.53
VPS28-202ENST00000377348 LINC01558Q9Y6Z2 57 aa5.48□□□□□ -1.53
VPS28-202ENST00000377348 SMIM26A0A096LP01 95 aa5.46□□□□□ -1.54
VPS28-202ENST00000377348 SPATA8Q6RVD6 105 aa5.45□□□□□ -1.54
VPS28-202ENST00000377348 A0A1B0GU33 70 aa5.44□□□□□ -1.54
VPS28-202ENST00000377348 MUC12Q9UKN1 5478 aa5.44□□□□□ -1.54
VPS28-202ENST00000377348 A0A0D9SG42 100 aa5.43□□□□□ -1.54
VPS28-202ENST00000377348 Q1T7F1 81 aa5.43□□□□□ -1.54
VPS28-202ENST00000377348 A0A1B0GU69 56 aa5.42□□□□□ -1.54
VPS28-202ENST00000377348 KRTAP12-2P59991 146 aa5.41□□□□□ -1.54
VPS28-202ENST00000377348 KRTAP10-7P60409 375 aaPredicted RBP5.39□□□□□ -1.55
VPS28-202ENST00000377348 KRTAP5-9P26371 169 aa5.38□□□□□ -1.55
VPS28-202ENST00000377348 CAMK2N1Q7Z7J9 78 aa5.36□□□□□ -1.55
VPS28-202ENST00000377348 PRR15LQ9BU68 103 aa5.36□□□□□ -1.55
VPS28-202ENST00000377348 V9GYY9 64 aa5.36□□□□□ -1.55
VPS28-202ENST00000377348 NEBP20929 6669 aa5.36□□□□□ -1.55
VPS28-202ENST00000377348 KRTAP4-8A0A0G2JLE6 195 aa5.35□□□□□ -1.55
VPS28-202ENST00000377348 KRTAP4-8Q9BYQ9 185 aa5.35□□□□□ -1.55
VPS28-202ENST00000377348 PSPHP1O15172 72 aa5.33□□□□□ -1.56
VPS28-202ENST00000377348 KRTAP8-1Q8IUC2 63 aa5.33□□□□□ -1.56
VPS28-202ENST00000377348 KRTAP10-12P60413 245 aa5.32□□□□□ -1.56
VPS28-202ENST00000377348 SPINT4Q6UDR6 99 aa5.32□□□□□ -1.56
VPS28-202ENST00000377348 MDN1Q9NU22 5596 aa5.31□□□□□ -1.56
VPS28-202ENST00000377348 KRTAP12-1P59990 96 aa5.3□□□□□ -1.56
VPS28-202ENST00000377348 SPRR2FQ96RM1 72 aa5.3□□□□□ -1.56
VPS28-202ENST00000377348 A8MU10 97 aa5.29□□□□□ -1.56
VPS28-202ENST00000377348 SVIPQ8NHG7 77 aa5.28□□□□□ -1.56
VPS28-202ENST00000377348 UQCR11O14957 56 aa5.2□□□□□ -1.58
VPS28-202ENST00000377348 SPRR2EP22531 72 aa5.18□□□□□ -1.58
VPS28-202ENST00000377348 SPRR2BP35325 72 aa5.18□□□□□ -1.58
VPS28-202ENST00000377348 SPRR2AP35326 72 aa5.18□□□□□ -1.58
VPS28-202ENST00000377348 MIR22HGQ0VDD5 57 aa5.14□□□□□ -1.59
VPS28-202ENST00000377348 A6NED7 52 aa5.13□□□□□ -1.59
VPS28-202ENST00000377348 LCE1AQ5T7P2 110 aa5.13□□□□□ -1.59
VPS28-202ENST00000377348 KRTAP20-1Q3LI63 56 aa5.08□□□□□ -1.6
VPS28-202ENST00000377348 C10orf95Q9H7T3 257 aa5.06□□□□□ -1.6
VPS28-202ENST00000377348 CDC42SE1Q9NRR8 79 aa5.05□□□□□ -1.6
VPS28-202ENST00000377348 KRTAP19-7Q3SYF9 63 aa5.02□□□□□ -1.61
VPS28-202ENST00000377348 SPRR2DP22532 72 aa5□□□□□ -1.61
VPS28-202ENST00000377348 KRTAP2-3P0C7H8 128 aa4.98□□□□□ -1.61
VPS28-202ENST00000377348 KRTAP2-4Q9BYR9 128 aa4.98□□□□□ -1.61
VPS28-202ENST00000377348 MT1EP04732 61 aa4.97□□□□□ -1.61
VPS28-202ENST00000377348 TNP1P09430 55 aa4.97□□□□□ -1.61
VPS28-202ENST00000377348 KRTAP19-5Q3LI72 72 aa4.95□□□□□ -1.62
VPS28-202ENST00000377348 LCE3AQ5TA76 89 aa4.94□□□□□ -1.62
VPS28-202ENST00000377348 BRK1Q8WUW1 75 aa4.93□□□□□ -1.62
VPS28-202ENST00000377348 K7ERS5 55 aa4.88□□□□□ -1.63
VPS28-202ENST00000377348 KRTAP19-3Q7Z4W3 81 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms