RNA–Protein interactions for RNA: ENST00000374490.7

HMGCL-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCL, Length 1,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-203ENST00000374490 C9orf92A6NGG3 77 aa7.56□□□□□ -1.2
HMGCL-203ENST00000374490 SEC61GP60059 68 aa7.53□□□□□ -1.2
HMGCL-203ENST00000374490 MIR22HGQ0VDD5 57 aa7.53□□□□□ -1.2
HMGCL-203ENST00000374490 MT1HL1P0DM35 61 aa7.5□□□□□ -1.21
HMGCL-203ENST00000374490 KRTAP10-8P60410 259 aa7.49□□□□□ -1.21
HMGCL-203ENST00000374490 PKHD1L1Q86WI1 4243 aa7.47□□□□□ -1.21
HMGCL-203ENST00000374490 COX6B2Q6YFQ2 88 aa7.4□□□□□ -1.22
HMGCL-203ENST00000374490 KRTAP3-1Q9BYR8 98 aa7.4□□□□□ -1.22
HMGCL-203ENST00000374490 LRP2P98164 4655 aa7.39□□□□□ -1.23
HMGCL-203ENST00000374490 RNF213Q63HN8 5207 aa7.38□□□□□ -1.23
HMGCL-203ENST00000374490 RBM12B-AS1Q9P1G2 102 aa7.37□□□□□ -1.23
HMGCL-203ENST00000374490 TNXBP22105 4242 aa7.34□□□□□ -1.23
HMGCL-203ENST00000374490 RPL37P61927 97 aaKnown RBP7.31□□□□□ -1.24
HMGCL-203ENST00000374490 A0A1B0GU33 70 aa7.3□□□□□ -1.24
HMGCL-203ENST00000374490 H1FX-AS1Q4G0G2 97 aa7.28□□□□□ -1.24
HMGCL-203ENST00000374490 H0YAA0 97 aa7.25□□□□□ -1.25
HMGCL-203ENST00000374490 XP32Q5T750 250 aa7.23□□□□□ -1.25
HMGCL-203ENST00000374490 PRAC1Q96KF2 57 aa7.19□□□□□ -1.26
HMGCL-203ENST00000374490 ADM2Q7Z4H4 148 aa7.16□□□□□ -1.26
HMGCL-203ENST00000374490 K7ERS5 55 aa7.14□□□□□ -1.27
HMGCL-203ENST00000374490 S4R3F8 94 aa7.13□□□□□ -1.27
HMGCL-203ENST00000374490 LPAP08519 4548 aa7.12□□□□□ -1.27
HMGCL-203ENST00000374490 TPRXLQ17RH7 258 aa7.12□□□□□ -1.27
HMGCL-203ENST00000374490 KRTAP3-3Q9BYR6 98 aa7.11□□□□□ -1.27
HMGCL-203ENST00000374490 KRTAP10-6P60371 365 aaPredicted RBP7.05□□□□□ -1.28
HMGCL-203ENST00000374490 LINC01554Q52M75 96 aa7.05□□□□□ -1.28
HMGCL-203ENST00000374490 CSAG1Q6PB30 78 aa7.05□□□□□ -1.28
HMGCL-203ENST00000374490 MUC2Q02817 5179 aa7.01□□□□□ -1.29
HMGCL-203ENST00000374490 KRTAP3-2Q9BYR7 98 aa7.01□□□□□ -1.29
HMGCL-203ENST00000374490 KRTAP25-1Q3LHN0 102 aa6.94□□□□□ -1.3
HMGCL-203ENST00000374490 KRTAP9-2Q9BYQ4 174 aa6.94□□□□□ -1.3
HMGCL-203ENST00000374490 KRTAP13-4Q3LI77 160 aa6.9□□□□□ -1.3
HMGCL-203ENST00000374490 SEC61BP60468 96 aaKnown RBP6.9□□□□□ -1.31
HMGCL-203ENST00000374490 ROMO1P60602 79 aa6.9□□□□□ -1.31
HMGCL-203ENST00000374490 FAT4Q6V0I7 4981 aa6.88□□□□□ -1.31
HMGCL-203ENST00000374490 P0C880 135 aa6.88□□□□□ -1.31
HMGCL-203ENST00000374490 A0A0D9SG42 100 aa6.86□□□□□ -1.31
HMGCL-203ENST00000374490 LCE2AQ5TA79 106 aaPredicted RBP6.85□□□□□ -1.31
HMGCL-203ENST00000374490 M0QZ58 72 aa6.82□□□□□ -1.32
HMGCL-203ENST00000374490 KRTAP9-6A0A140TA67 174 aa6.79□□□□□ -1.32
HMGCL-203ENST00000374490 MUC17Q685J3 4493 aa6.78□□□□□ -1.32
HMGCL-203ENST00000374490 KRTAP12-1P59990 96 aa6.71□□□□□ -1.34
HMGCL-203ENST00000374490 KRTAP12-2P59991 146 aa6.71□□□□□ -1.34
HMGCL-203ENST00000374490 SPINT4Q6UDR6 99 aa6.68□□□□□ -1.34
HMGCL-203ENST00000374490 CRIPTQ9P021 101 aa6.67□□□□□ -1.34
HMGCL-203ENST00000374490 KRTAP4-1Q9BYQ7 146 aa6.65□□□□□ -1.34
HMGCL-203ENST00000374490 R4GN34 69 aa6.59□□□□□ -1.35
HMGCL-203ENST00000374490 LCE2DQ5TA82 110 aaPredicted RBP6.58□□□□□ -1.36
HMGCL-203ENST00000374490 CRCT1Q9UGL9 99 aa6.52□□□□□ -1.37
HMGCL-203ENST00000374490 FSIP2Q5CZC0 6907 aa6.51□□□□□ -1.37
HMGCL-203ENST00000374490 C10orf95Q9H7T3 257 aa6.5□□□□□ -1.37
HMGCL-203ENST00000374490 KRTAP19-2Q3LHN2 52 aa6.47□□□□□ -1.37
HMGCL-203ENST00000374490 LCE2CQ5TA81 110 aa6.43□□□□□ -1.38
HMGCL-203ENST00000374490 MT1HP80294 61 aa6.41□□□□□ -1.38
HMGCL-203ENST00000374490 LORP23490 312 aaPredicted RBP6.39□□□□□ -1.39
HMGCL-203ENST00000374490 M0R2T5 61 aa6.33□□□□□ -1.4
HMGCL-203ENST00000374490 KRTAP15-1Q3LI76 137 aa6.28□□□□□ -1.4
HMGCL-203ENST00000374490 CAMK2N1Q7Z7J9 78 aa6.25□□□□□ -1.41
HMGCL-203ENST00000374490 H3BS24 57 aa6.25□□□□□ -1.41
HMGCL-203ENST00000374490 PP632Q6XCG6 107 aa6.23□□□□□ -1.41
HMGCL-203ENST00000374490 FLGP20930 4061 aaPredicted RBP6.18□□□□□ -1.42
HMGCL-203ENST00000374490 KRTAP9-7A8MTY7 169 aa6.08□□□□□ -1.44
HMGCL-203ENST00000374490 KRTAP23-1A1A580 65 aa6.07□□□□□ -1.44
HMGCL-203ENST00000374490 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.07□□□□□ -1.44
HMGCL-203ENST00000374490 PLAC4Q8WY50 150 aa6.07□□□□□ -1.44
HMGCL-203ENST00000374490 TNP1P09430 55 aa6.06□□□□□ -1.44
HMGCL-203ENST00000374490 NDUFAF8A1L188 74 aa6.04□□□□□ -1.44
HMGCL-203ENST00000374490 USH2AO75445 5202 aa6.04□□□□□ -1.44
HMGCL-203ENST00000374490 SPRR2GQ9BYE4 73 aa6.03□□□□□ -1.44
HMGCL-203ENST00000374490 SSPOA2VEC9 5147 aa6.03□□□□□ -1.44
HMGCL-203ENST00000374490 KRTAP9-8Q9BYQ0 159 aa6.01□□□□□ -1.45
HMGCL-203ENST00000374490 MT2AP02795 61 aa5.98□□□□□ -1.45
HMGCL-203ENST00000374490 KRTAP10-10P60014 251 aa5.97□□□□□ -1.45
HMGCL-203ENST00000374490 MT1FP04733 61 aa5.95□□□□□ -1.46
HMGCL-203ENST00000374490 KRTAP19-1Q8IUB9 90 aa5.93□□□□□ -1.46
HMGCL-203ENST00000374490 FCGBPQ9Y6R7 5405 aaPredicted RBP5.9□□□□□ -1.46
HMGCL-203ENST00000374490 LCE2BO14633 110 aa5.85□□□□□ -1.47
HMGCL-203ENST00000374490 KRTAP9-3Q9BYQ3 159 aa5.83□□□□□ -1.48
HMGCL-203ENST00000374490 LUZP6Q538Z0 58 aa5.82□□□□□ -1.48
HMGCL-203ENST00000374490 KRTAP19-8Q3LI54 63 aa5.8□□□□□ -1.48
HMGCL-203ENST00000374490 MACF1Q9UPN3 7388 aaKnown RBP5.78□□□□□ -1.48
HMGCL-203ENST00000374490 SYNE2Q8WXH0 6885 aaKnown RBP5.75□□□□□ -1.49
HMGCL-203ENST00000374490 KRTAP19-6Q3LI70 58 aa5.71□□□□□ -1.5
HMGCL-203ENST00000374490 SPRR5A0A1B0GTR4 108 aa5.7□□□□□ -1.5
HMGCL-203ENST00000374490 LCE3AQ5TA76 89 aa5.66□□□□□ -1.5
HMGCL-203ENST00000374490 MT1BP07438 61 aa5.65□□□□□ -1.51
HMGCL-203ENST00000374490 KRTAP6-3Q3LI67 103 aa5.6□□□□□ -1.51
HMGCL-203ENST00000374490 KRTAP10-5P60370 271 aa5.59□□□□□ -1.51
HMGCL-203ENST00000374490 KRTAP8-1Q8IUC2 63 aa5.59□□□□□ -1.51
HMGCL-203ENST00000374490 MT1XP80297 61 aa5.59□□□□□ -1.52
HMGCL-203ENST00000374490 PRO2289Q9P1D8 64 aa5.52□□□□□ -1.53
HMGCL-203ENST00000374490 KRTAP10-12P60413 245 aa5.52□□□□□ -1.53
HMGCL-203ENST00000374490 A0A0A0MQY5 61 aa5.5□□□□□ -1.53
HMGCL-203ENST00000374490 NEBP20929 6669 aa5.44□□□□□ -1.54
HMGCL-203ENST00000374490 KRTAP12-3P60328 96 aa5.43□□□□□ -1.54
HMGCL-203ENST00000374490 MUC12Q9UKN1 5478 aa5.39□□□□□ -1.55
HMGCL-203ENST00000374490 KRTAP10-7P60409 375 aaPredicted RBP5.38□□□□□ -1.55
HMGCL-203ENST00000374490 KRTAP20-1Q3LI63 56 aa5.32□□□□□ -1.56
HMGCL-203ENST00000374490 KRTAP5-9P26371 169 aa5.23□□□□□ -1.57
HMGCL-203ENST00000374490 KMT2DO14686 5537 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 124.7 ms