RNA–Protein interactions for RNA: ENST00000372459.6

CTSA-203, Transcript of cathepsin A, humanhuman

TSL 1 (best) BASIC

Gene CTSA, Length 1,972 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-203ENST00000372459 HERC2O95714 4834 aa13.11□□□□□ -0.31
CTSA-203ENST00000372459 J3QL48 77 aa13.09□□□□□ -0.31
CTSA-203ENST00000372459 KRTAP3-1Q9BYR8 98 aa13.02□□□□□ -0.32
CTSA-203ENST00000372459 COX6B2Q6YFQ2 88 aa13□□□□□ -0.33
CTSA-203ENST00000372459 SPATA8Q6RVD6 105 aa12.98□□□□□ -0.33
CTSA-203ENST00000372459 UQCR11O14957 56 aa12.95□□□□□ -0.34
CTSA-203ENST00000372459 SEC61GP60059 68 aa12.92□□□□□ -0.34
CTSA-203ENST00000372459 MIR22HGQ0VDD5 57 aa12.89□□□□□ -0.35
CTSA-203ENST00000372459 LRP2P98164 4655 aa12.88□□□□□ -0.35
CTSA-203ENST00000372459 LPAP08519 4548 aa12.88□□□□□ -0.35
CTSA-203ENST00000372459 SEC61BP60468 96 aaKnown RBP12.71□□□□□ -0.37
CTSA-203ENST00000372459 RBM12B-AS1Q9P1G2 102 aa12.71□□□□□ -0.37
CTSA-203ENST00000372459 H1FX-AS1Q4G0G2 97 aa12.59□□□□□ -0.39
CTSA-203ENST00000372459 S4R3F8 94 aa12.59□□□□□ -0.39
CTSA-203ENST00000372459 KRTAP3-3Q9BYR6 98 aa12.54□□□□□ -0.4
CTSA-203ENST00000372459 PCLOQ9Y6V0 5065 aa12.51□□□□□ -0.41
CTSA-203ENST00000372459 H0YAA0 97 aa12.49□□□□□ -0.41
CTSA-203ENST00000372459 A0A1B0GU33 70 aa12.47□□□□□ -0.41
CTSA-203ENST00000372459 PRAC1Q96KF2 57 aa12.46□□□□□ -0.41
CTSA-203ENST00000372459 ADM2Q7Z4H4 148 aa12.43□□□□□ -0.42
CTSA-203ENST00000372459 MUC17Q685J3 4493 aa12.43□□□□□ -0.42
CTSA-203ENST00000372459 KRTAP4-1Q9BYQ7 146 aa12.39□□□□□ -0.43
CTSA-203ENST00000372459 HERC1Q15751 4861 aa12.35□□□□□ -0.43
CTSA-203ENST00000372459 HMCN2Q8NDA2 5059 aa12.29□□□□□ -0.44
CTSA-203ENST00000372459 CSAG1Q6PB30 78 aa12.26□□□□□ -0.45
CTSA-203ENST00000372459 KRTAP10-6P60371 365 aaPredicted RBP12.19□□□□□ -0.46
CTSA-203ENST00000372459 KRTAP3-2Q9BYR7 98 aa12.18□□□□□ -0.46
CTSA-203ENST00000372459 LINC01554Q52M75 96 aa12.12□□□□□ -0.47
CTSA-203ENST00000372459 KRTAP19-2Q3LHN2 52 aa12.11□□□□□ -0.47
CTSA-203ENST00000372459 K7ERS5 55 aa12.09□□□□□ -0.47
CTSA-203ENST00000372459 P0C880 135 aa12.05□□□□□ -0.48
CTSA-203ENST00000372459 MUC2Q02817 5179 aa11.99□□□□□ -0.49
CTSA-203ENST00000372459 KRTAP13-4Q3LI77 160 aa11.94□□□□□ -0.5
CTSA-203ENST00000372459 KRTAP25-1Q3LHN0 102 aa11.9□□□□□ -0.5
CTSA-203ENST00000372459 FLGP20930 4061 aaPredicted RBP11.82□□□□□ -0.52
CTSA-203ENST00000372459 ROMO1P60602 79 aa11.79□□□□□ -0.52
CTSA-203ENST00000372459 A0A0D9SG42 100 aa11.78□□□□□ -0.52
CTSA-203ENST00000372459 M0QZ58 72 aa11.78□□□□□ -0.52
CTSA-203ENST00000372459 LCE2CQ5TA81 110 aa11.69□□□□□ -0.54
CTSA-203ENST00000372459 UBR4Q5T4S7 5183 aa11.67□□□□□ -0.54
CTSA-203ENST00000372459 RNF213Q63HN8 5207 aa11.65□□□□□ -0.54
CTSA-203ENST00000372459 R4GN34 69 aa11.63□□□□□ -0.55
CTSA-203ENST00000372459 CRIPTQ9P021 101 aa11.56□□□□□ -0.56
CTSA-203ENST00000372459 LORP23490 312 aaPredicted RBP11.55□□□□□ -0.56
CTSA-203ENST00000372459 KRTAP12-2P59991 146 aa11.55□□□□□ -0.56
CTSA-203ENST00000372459 KRTAP12-1P59990 96 aa11.52□□□□□ -0.57
CTSA-203ENST00000372459 FAT4Q6V0I7 4981 aa11.49□□□□□ -0.57
CTSA-203ENST00000372459 SPINT4Q6UDR6 99 aa11.47□□□□□ -0.57
CTSA-203ENST00000372459 MT1HP80294 61 aa11.45□□□□□ -0.58
CTSA-203ENST00000372459 M0R2T5 61 aa11.42□□□□□ -0.58
CTSA-203ENST00000372459 C10orf95Q9H7T3 257 aa11.25□□□□□ -0.61
CTSA-203ENST00000372459 MT2AP02795 61 aa11.08□□□□□ -0.64
CTSA-203ENST00000372459 KRTAP9-8Q9BYQ0 159 aa11.07□□□□□ -0.64
CTSA-203ENST00000372459 MT1FP04733 61 aa11.03□□□□□ -0.64
CTSA-203ENST00000372459 KRTAP10-10P60014 251 aa11.03□□□□□ -0.64
CTSA-203ENST00000372459 SPRR2GQ9BYE4 73 aa11.03□□□□□ -0.64
CTSA-203ENST00000372459 KRTAP19-1Q8IUB9 90 aa10.97□□□□□ -0.65
CTSA-203ENST00000372459 CAMK2N1Q7Z7J9 78 aa10.95□□□□□ -0.66
CTSA-203ENST00000372459 H3BS24 57 aa10.83□□□□□ -0.68
CTSA-203ENST00000372459 KRTAP15-1Q3LI76 137 aa10.83□□□□□ -0.68
CTSA-203ENST00000372459 PLAC4Q8WY50 150 aa10.79□□□□□ -0.68
CTSA-203ENST00000372459 LCE2AQ5TA79 106 aaPredicted RBP10.72□□□□□ -0.69
CTSA-203ENST00000372459 KRTAP19-8Q3LI54 63 aa10.68□□□□□ -0.7
CTSA-203ENST00000372459 KRTAP9-3Q9BYQ3 159 aa10.65□□□□□ -0.7
CTSA-203ENST00000372459 PP632Q6XCG6 107 aa10.55□□□□□ -0.72
CTSA-203ENST00000372459 MT1BP07438 61 aa10.51□□□□□ -0.73
CTSA-203ENST00000372459 TNP1P09430 55 aa10.46□□□□□ -0.73
CTSA-203ENST00000372459 NDUFAF8A1L188 74 aa10.43□□□□□ -0.74
CTSA-203ENST00000372459 LCE2BO14633 110 aa10.3□□□□□ -0.76
CTSA-203ENST00000372459 KRTAP23-1A1A580 65 aa10.28□□□□□ -0.76
CTSA-203ENST00000372459 KRTAP10-5P60370 271 aa10.26□□□□□ -0.77
CTSA-203ENST00000372459 MT1XP80297 61 aa10.26□□□□□ -0.77
CTSA-203ENST00000372459 PRO2289Q9P1D8 64 aa10.13□□□□□ -0.79
CTSA-203ENST00000372459 LCE3AQ5TA76 89 aa9.95□□□□□ -0.82
CTSA-203ENST00000372459 USH2AO75445 5202 aa9.94□□□□□ -0.82
CTSA-203ENST00000372459 LUZP6Q538Z0 58 aa9.91□□□□□ -0.82
CTSA-203ENST00000372459 KRTAP10-7P60409 375 aaPredicted RBP9.88□□□□□ -0.83
CTSA-203ENST00000372459 KRTAP10-12P60413 245 aa9.87□□□□□ -0.83
CTSA-203ENST00000372459 SPRR5A0A1B0GTR4 108 aa9.79□□□□□ -0.84
CTSA-203ENST00000372459 KRTAP8-1Q8IUC2 63 aa9.75□□□□□ -0.85
CTSA-203ENST00000372459 SSPOA2VEC9 5147 aa9.61□□□□□ -0.87
CTSA-203ENST00000372459 LCE2DQ5TA82 110 aaPredicted RBP9.6□□□□□ -0.87
CTSA-203ENST00000372459 KRTAP19-6Q3LI70 58 aa9.57□□□□□ -0.88
CTSA-203ENST00000372459 KRTAP12-3P60328 96 aa9.54□□□□□ -0.88
CTSA-203ENST00000372459 KRTAP4-8A0A0G2JLE6 195 aa9.41□□□□□ -0.9
CTSA-203ENST00000372459 KRTAP4-8Q9BYQ9 185 aa9.41□□□□□ -0.9
CTSA-203ENST00000372459 FSIP2Q5CZC0 6907 aa9.39□□□□□ -0.91
CTSA-203ENST00000372459 KMT2DO14686 5537 aa9.37□□□□□ -0.91
CTSA-203ENST00000372459 KRTAP19-5Q3LI72 72 aa9.37□□□□□ -0.91
CTSA-203ENST00000372459 A0A0A0MQY5 61 aa9.35□□□□□ -0.91
CTSA-203ENST00000372459 KRTAP19-7Q3SYF9 63 aa9.15□□□□□ -0.95
CTSA-203ENST00000372459 FCGBPQ9Y6R7 5405 aaPredicted RBP9.09□□□□□ -0.95
CTSA-203ENST00000372459 KRTAP9-2Q9BYQ4 174 aa9.03□□□□□ -0.96
CTSA-203ENST00000372459 MT1EP04732 61 aa8.97□□□□□ -0.97
CTSA-203ENST00000372459 LCE3CQ5T5A8 94 aa8.94□□□□□ -0.98
CTSA-203ENST00000372459 KRTAP19-4Q3LI73 84 aa8.85□□□□□ -0.99
CTSA-203ENST00000372459 MT1LQ93083 61 aa8.84□□□□□ -0.99
CTSA-203ENST00000372459 CRCT1Q9UGL9 99 aa8.78□□□□□ -1
CTSA-203ENST00000372459 MACF1Q9UPN3 7388 aaKnown RBP8.66□□□□□ -1.02
CTSA-203ENST00000372459 KRTAP4-7Q9BYR0 210 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms