RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 LOC101927531A0A1B0GV80 90 aa7.97□□□□□ -1.13
CLN3-201ENST00000333496 BRK1Q8WUW1 75 aa7.94□□□□□ -1.14
CLN3-201ENST00000333496 SPINK7P58062 85 aa7.92□□□□□ -1.14
CLN3-201ENST00000333496 COA5Q86WW8 74 aa7.92□□□□□ -1.14
CLN3-201ENST00000333496 RBM12B-AS1Q9P1G2 102 aa7.92□□□□□ -1.14
CLN3-201ENST00000333496 Q5W150 140 aa7.89□□□□□ -1.15
CLN3-201ENST00000333496 PSPHP1O15172 72 aa7.86□□□□□ -1.15
CLN3-201ENST00000333496 KRTAP9-6A0A140TA67 174 aa7.85□□□□□ -1.15
CLN3-201ENST00000333496 KRTAP9-8Q9BYQ0 159 aa7.84□□□□□ -1.15
CLN3-201ENST00000333496 A8MUN3 132 aa7.82□□□□□ -1.16
CLN3-201ENST00000333496 FSIP2Q5CZC0 6907 aa7.82□□□□□ -1.16
CLN3-201ENST00000333496 Q5VV11 94 aa7.81□□□□□ -1.16
CLN3-201ENST00000333496 PRR15LQ9BU68 103 aa7.79□□□□□ -1.16
CLN3-201ENST00000333496 LINC01558Q9Y6Z2 57 aa7.77□□□□□ -1.17
CLN3-201ENST00000333496 IGKV2-30P06310 120 aa7.76□□□□□ -1.17
CLN3-201ENST00000333496 ACYP2P14621 99 aa7.75□□□□□ -1.17
CLN3-201ENST00000333496 DMAC1Q96GE9 116 aa7.74□□□□□ -1.17
CLN3-201ENST00000333496 CRCT1Q9UGL9 99 aa7.74□□□□□ -1.17
CLN3-201ENST00000333496 CHKB-CPT1BH3BT56 60 aa7.74□□□□□ -1.17
CLN3-201ENST00000333496 MT2AP02795 61 aa7.72□□□□□ -1.17
CLN3-201ENST00000333496 IGKV2D-30A0A075B6S6 120 aa7.71□□□□□ -1.17
CLN3-201ENST00000333496 C7orf65Q6ZTY9 151 aa7.7□□□□□ -1.18
CLN3-201ENST00000333496 MT1FP04733 61 aa7.67□□□□□ -1.18
CLN3-201ENST00000333496 A6NED7 52 aa7.66□□□□□ -1.18
CLN3-201ENST00000333496 H1FX-AS1Q4G0G2 97 aa7.63□□□□□ -1.19
CLN3-201ENST00000333496 CDC42SE1Q9NRR8 79 aa7.61□□□□□ -1.19
CLN3-201ENST00000333496 KRTAP10-10P60014 251 aa7.6□□□□□ -1.19
CLN3-201ENST00000333496 KRTAP9-3Q9BYQ3 159 aa7.58□□□□□ -1.2
CLN3-201ENST00000333496 LCA10Q71F78 164 aa7.56□□□□□ -1.2
CLN3-201ENST00000333496 LCE2BO14633 110 aa7.53□□□□□ -1.2
CLN3-201ENST00000333496 A8MU10 97 aa7.52□□□□□ -1.2
CLN3-201ENST00000333496 KRTAP3-1Q9BYR8 98 aa7.52□□□□□ -1.21
CLN3-201ENST00000333496 USH2AO75445 5202 aa7.51□□□□□ -1.21
CLN3-201ENST00000333496 PMAIP1Q13794 54 aa7.51□□□□□ -1.21
CLN3-201ENST00000333496 A0A1B0GU69 56 aa7.49□□□□□ -1.21
CLN3-201ENST00000333496 SPTSSBQ8NFR3 76 aa7.48□□□□□ -1.21
CLN3-201ENST00000333496 SSPOA2VEC9 5147 aa7.42□□□□□ -1.22
CLN3-201ENST00000333496 A6NN06 94 aa7.41□□□□□ -1.22
CLN3-201ENST00000333496 KTN1-AS1Q86SY8 53 aa7.39□□□□□ -1.23
CLN3-201ENST00000333496 S4R3F8 94 aa7.38□□□□□ -1.23
CLN3-201ENST00000333496 UQCR11O14957 56 aa7.37□□□□□ -1.23
CLN3-201ENST00000333496 SPATA8Q6RVD6 105 aa7.35□□□□□ -1.23
CLN3-201ENST00000333496 KRTAP19-1Q8IUB9 90 aa7.34□□□□□ -1.24
CLN3-201ENST00000333496 SEC61GP60059 68 aa7.33□□□□□ -1.24
CLN3-201ENST00000333496 MIR22HGQ0VDD5 57 aa7.31□□□□□ -1.24
CLN3-201ENST00000333496 CSAG1Q6PB30 78 aa7.3□□□□□ -1.24
CLN3-201ENST00000333496 KRTAP3-3Q9BYR6 98 aa7.3□□□□□ -1.24
CLN3-201ENST00000333496 FCGBPQ9Y6R7 5405 aaPredicted RBP7.26□□□□□ -1.25
CLN3-201ENST00000333496 KRTAP19-6Q3LI70 58 aa7.23□□□□□ -1.25
CLN3-201ENST00000333496 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.22□□□□□ -1.25
CLN3-201ENST00000333496 SPRR2GQ9BYE4 73 aa7.13□□□□□ -1.27
CLN3-201ENST00000333496 A0A1B0GU33 70 aa7.1□□□□□ -1.27
CLN3-201ENST00000333496 KRTAP9-7A8MTY7 169 aa7.09□□□□□ -1.28
CLN3-201ENST00000333496 MT1BP07438 61 aa7.08□□□□□ -1.28
CLN3-201ENST00000333496 MACF1Q9UPN3 7388 aaKnown RBP7.07□□□□□ -1.28
CLN3-201ENST00000333496 H0YAA0 97 aa7.07□□□□□ -1.28
CLN3-201ENST00000333496 KRTAP19-8Q3LI54 63 aa7.07□□□□□ -1.28
CLN3-201ENST00000333496 CRIPTQ9P021 101 aa7.01□□□□□ -1.29
CLN3-201ENST00000333496 ADM2Q7Z4H4 148 aa6.96□□□□□ -1.3
CLN3-201ENST00000333496 PRAC1Q96KF2 57 aa6.95□□□□□ -1.3
CLN3-201ENST00000333496 SYNE2Q8WXH0 6885 aaKnown RBP6.95□□□□□ -1.3
CLN3-201ENST00000333496 K7ERS5 55 aa6.94□□□□□ -1.3
CLN3-201ENST00000333496 KRTAP3-2Q9BYR7 98 aa6.89□□□□□ -1.31
CLN3-201ENST00000333496 KRTAP10-5P60370 271 aa6.87□□□□□ -1.31
CLN3-201ENST00000333496 P0C880 135 aa6.86□□□□□ -1.31
CLN3-201ENST00000333496 LINC01554Q52M75 96 aa6.79□□□□□ -1.32
CLN3-201ENST00000333496 KRTAP6-3Q3LI67 103 aa6.77□□□□□ -1.33
CLN3-201ENST00000333496 R4GN34 69 aa6.76□□□□□ -1.33
CLN3-201ENST00000333496 KRTAP13-4Q3LI77 160 aa6.76□□□□□ -1.33
CLN3-201ENST00000333496 M0QZ58 72 aa6.72□□□□□ -1.33
CLN3-201ENST00000333496 KRTAP25-1Q3LHN0 102 aa6.71□□□□□ -1.34
CLN3-201ENST00000333496 ROMO1P60602 79 aa6.7□□□□□ -1.34
CLN3-201ENST00000333496 A0A0D9SG42 100 aa6.68□□□□□ -1.34
CLN3-201ENST00000333496 MT1XP80297 61 aa6.66□□□□□ -1.34
CLN3-201ENST00000333496 PLAC4Q8WY50 150 aa6.66□□□□□ -1.34
CLN3-201ENST00000333496 PRO2289Q9P1D8 64 aa6.6□□□□□ -1.35
CLN3-201ENST00000333496 KRTAP12-1P59990 96 aa6.54□□□□□ -1.36
CLN3-201ENST00000333496 KRTAP12-2P59991 146 aa6.54□□□□□ -1.36
CLN3-201ENST00000333496 KRTAP5-9P26371 169 aa6.54□□□□□ -1.36
CLN3-201ENST00000333496 MUC12Q9UKN1 5478 aa6.53□□□□□ -1.36
CLN3-201ENST00000333496 KMT2DO14686 5537 aa6.52□□□□□ -1.37
CLN3-201ENST00000333496 SPINT4Q6UDR6 99 aa6.5□□□□□ -1.37
CLN3-201ENST00000333496 NEBP20929 6669 aa6.47□□□□□ -1.37
CLN3-201ENST00000333496 KRTAP10-7P60409 375 aaPredicted RBP6.36□□□□□ -1.39
CLN3-201ENST00000333496 KRTAP4-8A0A0G2JLE6 195 aa6.36□□□□□ -1.39
CLN3-201ENST00000333496 KRTAP4-8Q9BYQ9 185 aa6.36□□□□□ -1.39
CLN3-201ENST00000333496 MDN1Q9NU22 5596 aa6.35□□□□□ -1.39
CLN3-201ENST00000333496 KRTAP8-1Q8IUC2 63 aa6.35□□□□□ -1.39
CLN3-201ENST00000333496 SPRR2FQ96RM1 72 aa6.35□□□□□ -1.39
CLN3-201ENST00000333496 KRTAP10-12P60413 245 aa6.32□□□□□ -1.4
CLN3-201ENST00000333496 C10orf95Q9H7T3 257 aa6.32□□□□□ -1.4
CLN3-201ENST00000333496 SPRR2EP22531 72 aa6.22□□□□□ -1.41
CLN3-201ENST00000333496 SPRR2BP35325 72 aa6.22□□□□□ -1.41
CLN3-201ENST00000333496 SPRR2AP35326 72 aa6.22□□□□□ -1.41
CLN3-201ENST00000333496 CAMK2N1Q7Z7J9 78 aa6.21□□□□□ -1.41
CLN3-201ENST00000333496 KRTAP20-1Q3LI63 56 aa6.2□□□□□ -1.42
CLN3-201ENST00000333496 LCE1AQ5T7P2 110 aa6.18□□□□□ -1.42
CLN3-201ENST00000333496 KRTAP2-3P0C7H8 128 aa6.08□□□□□ -1.44
CLN3-201ENST00000333496 KRTAP2-4Q9BYR9 128 aa6.08□□□□□ -1.44
CLN3-201ENST00000333496 KRTAP15-1Q3LI76 137 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms