RNA–Protein interactions for RNA: ENST00000328159.8

TPM3-205, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,771 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-205ENST00000328159 A0A1B0GU69 56 aa7.61□□□□□ -1.19
TPM3-205ENST00000328159 SEC61BP60468 96 aaKnown RBP7.59□□□□□ -1.19
TPM3-205ENST00000328159 SVIPQ8NHG7 77 aa7.59□□□□□ -1.19
TPM3-205ENST00000328159 LOC100996750A0A140TA64 210 aa7.59□□□□□ -1.2
TPM3-205ENST00000328159 KRTAP4-6Q9BYQ5 205 aa7.59□□□□□ -1.2
TPM3-205ENST00000328159 A6NED7 52 aa7.56□□□□□ -1.2
TPM3-205ENST00000328159 PRO0628Q9UI54 55 aa7.55□□□□□ -1.2
TPM3-205ENST00000328159 RBM12B-AS1Q9P1G2 102 aa7.52□□□□□ -1.21
TPM3-205ENST00000328159 H1FX-AS1Q4G0G2 97 aa7.51□□□□□ -1.21
TPM3-205ENST00000328159 SEC61GP60059 68 aa7.51□□□□□ -1.21
TPM3-205ENST00000328159 LCA10Q71F78 164 aa7.51□□□□□ -1.21
TPM3-205ENST00000328159 S4R3F8 94 aa7.51□□□□□ -1.21
TPM3-205ENST00000328159 PCLOQ9Y6V0 5065 aa7.5□□□□□ -1.21
TPM3-205ENST00000328159 A8MU10 97 aa7.46□□□□□ -1.21
TPM3-205ENST00000328159 MUC17Q685J3 4493 aa7.46□□□□□ -1.22
TPM3-205ENST00000328159 CDC42SE1Q9NRR8 79 aa7.46□□□□□ -1.22
TPM3-205ENST00000328159 KRTAP4-1Q9BYQ7 146 aa7.45□□□□□ -1.22
TPM3-205ENST00000328159 LCE2AQ5TA79 106 aaPredicted RBP7.42□□□□□ -1.22
TPM3-205ENST00000328159 UQCR11O14957 56 aa7.41□□□□□ -1.22
TPM3-205ENST00000328159 HERC1Q15751 4861 aa7.38□□□□□ -1.23
TPM3-205ENST00000328159 HMCN2Q8NDA2 5059 aa7.36□□□□□ -1.23
TPM3-205ENST00000328159 SPATA8Q6RVD6 105 aa7.36□□□□□ -1.23
TPM3-205ENST00000328159 MIR22HGQ0VDD5 57 aa7.35□□□□□ -1.23
TPM3-205ENST00000328159 A0A1B0GU33 70 aa7.32□□□□□ -1.24
TPM3-205ENST00000328159 CSAG1Q6PB30 78 aa7.31□□□□□ -1.24
TPM3-205ENST00000328159 KRTAP10-6P60371 365 aaPredicted RBP7.28□□□□□ -1.24
TPM3-205ENST00000328159 KRTAP19-2Q3LHN2 52 aa7.27□□□□□ -1.25
TPM3-205ENST00000328159 H0YAA0 97 aa7.25□□□□□ -1.25
TPM3-205ENST00000328159 PMAIP1Q13794 54 aa7.21□□□□□ -1.25
TPM3-205ENST00000328159 ADM2Q7Z4H4 148 aa7.2□□□□□ -1.26
TPM3-205ENST00000328159 P0C880 135 aa7.2□□□□□ -1.26
TPM3-205ENST00000328159 A6NN06 94 aa7.15□□□□□ -1.26
TPM3-205ENST00000328159 KRTAP13-4Q3LI77 160 aa7.12□□□□□ -1.27
TPM3-205ENST00000328159 MUC2Q02817 5179 aa7.08□□□□□ -1.28
TPM3-205ENST00000328159 FLGP20930 4061 aaPredicted RBP7.07□□□□□ -1.28
TPM3-205ENST00000328159 LCE2CQ5TA81 110 aa7.04□□□□□ -1.28
TPM3-205ENST00000328159 A0A0D9SG42 100 aa7.01□□□□□ -1.29
TPM3-205ENST00000328159 M0QZ58 72 aa7.01□□□□□ -1.29
TPM3-205ENST00000328159 RNF213Q63HN8 5207 aa6.98□□□□□ -1.29
TPM3-205ENST00000328159 K7ERS5 55 aa6.97□□□□□ -1.29
TPM3-205ENST00000328159 KTN1-AS1Q86SY8 53 aa6.97□□□□□ -1.29
TPM3-205ENST00000328159 UBR4Q5T4S7 5183 aa6.96□□□□□ -1.3
TPM3-205ENST00000328159 LORP23490 312 aaPredicted RBP6.92□□□□□ -1.3
TPM3-205ENST00000328159 R4GN34 69 aa6.92□□□□□ -1.3
TPM3-205ENST00000328159 MT1HP80294 61 aa6.86□□□□□ -1.31
TPM3-205ENST00000328159 KRTAP12-1P59990 96 aa6.85□□□□□ -1.31
TPM3-205ENST00000328159 KRTAP12-2P59991 146 aa6.85□□□□□ -1.31
TPM3-205ENST00000328159 FAT4Q6V0I7 4981 aa6.84□□□□□ -1.32
TPM3-205ENST00000328159 LINC01554Q52M75 96 aa6.83□□□□□ -1.32
TPM3-205ENST00000328159 M0R2T5 61 aa6.82□□□□□ -1.32
TPM3-205ENST00000328159 SPINT4Q6UDR6 99 aa6.82□□□□□ -1.32
TPM3-205ENST00000328159 KRTAP4-8Q9BYQ9 185 aa6.82□□□□□ -1.32
TPM3-205ENST00000328159 CRIPTQ9P021 101 aa6.78□□□□□ -1.32
TPM3-205ENST00000328159 PRAC1Q96KF2 57 aa6.76□□□□□ -1.33
TPM3-205ENST00000328159 ROMO1P60602 79 aa6.73□□□□□ -1.33
TPM3-205ENST00000328159 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.71□□□□□ -1.34
TPM3-205ENST00000328159 KRTAP9-2Q9BYQ4 174 aa6.7□□□□□ -1.34
TPM3-205ENST00000328159 KRTAP9-6A0A140TA67 174 aa6.67□□□□□ -1.34
TPM3-205ENST00000328159 MT2AP02795 61 aa6.65□□□□□ -1.34
TPM3-205ENST00000328159 KRTAP9-8Q9BYQ0 159 aa6.64□□□□□ -1.35
TPM3-205ENST00000328159 MT1FP04733 61 aa6.62□□□□□ -1.35
TPM3-205ENST00000328159 KRTAP10-10P60014 251 aa6.6□□□□□ -1.35
TPM3-205ENST00000328159 SPRR2GQ9BYE4 73 aa6.59□□□□□ -1.35
TPM3-205ENST00000328159 KRTAP19-1Q8IUB9 90 aa6.57□□□□□ -1.36
TPM3-205ENST00000328159 KRTAP25-1Q3LHN0 102 aa6.54□□□□□ -1.36
TPM3-205ENST00000328159 CAMK2N1Q7Z7J9 78 aa6.52□□□□□ -1.37
TPM3-205ENST00000328159 LCE3BQ5TA77 95 aa6.48□□□□□ -1.37
TPM3-205ENST00000328159 C10orf95Q9H7T3 257 aa6.48□□□□□ -1.37
TPM3-205ENST00000328159 PLAC4Q8WY50 150 aa6.43□□□□□ -1.38
TPM3-205ENST00000328159 KRTAP19-8Q3LI54 63 aa6.4□□□□□ -1.38
TPM3-205ENST00000328159 KRTAP9-3Q9BYQ3 159 aa6.39□□□□□ -1.39
TPM3-205ENST00000328159 KRTAP4-12Q9BQ66 201 aa6.36□□□□□ -1.39
TPM3-205ENST00000328159 KRTAP9-9Q9BYP9 154 aa6.36□□□□□ -1.39
TPM3-205ENST00000328159 KRTAP9-4Q9BYQ2 154 aa6.36□□□□□ -1.39
TPM3-205ENST00000328159 KRTAP4-8A0A0G2JLE6 195 aa6.34□□□□□ -1.39
TPM3-205ENST00000328159 MT1BP07438 61 aa6.31□□□□□ -1.4
TPM3-205ENST00000328159 TNP1P09430 55 aa6.23□□□□□ -1.41
TPM3-205ENST00000328159 KRTAP4-7Q9BYR0 210 aa6.15□□□□□ -1.43
TPM3-205ENST00000328159 MT1XP80297 61 aa6.14□□□□□ -1.43
TPM3-205ENST00000328159 PP632Q6XCG6 107 aa6.14□□□□□ -1.43
TPM3-205ENST00000328159 KRTAP10-5P60370 271 aa6.13□□□□□ -1.43
TPM3-205ENST00000328159 KRTAP23-1A1A580 65 aa6.08□□□□□ -1.44
TPM3-205ENST00000328159 LCE1DQ5T752 114 aa6.05□□□□□ -1.44
TPM3-205ENST00000328159 PRO2289Q9P1D8 64 aa6.03□□□□□ -1.44
TPM3-205ENST00000328159 H3BS24 57 aa5.95□□□□□ -1.46
TPM3-205ENST00000328159 USH2AO75445 5202 aa5.95□□□□□ -1.46
TPM3-205ENST00000328159 LCE3AQ5TA76 89 aa5.95□□□□□ -1.46
TPM3-205ENST00000328159 KRTAP4-9Q9BYQ8 210 aa5.93□□□□□ -1.46
TPM3-205ENST00000328159 KRTAP10-7P60409 375 aaPredicted RBP5.91□□□□□ -1.46
TPM3-205ENST00000328159 KRTAP10-12P60413 245 aa5.89□□□□□ -1.47
TPM3-205ENST00000328159 KRTAP4-2Q9BYR5 136 aa5.89□□□□□ -1.47
TPM3-205ENST00000328159 KRTAP15-1Q3LI76 137 aa5.84□□□□□ -1.47
TPM3-205ENST00000328159 KRTAP8-1Q8IUC2 63 aa5.82□□□□□ -1.48
TPM3-205ENST00000328159 SSPOA2VEC9 5147 aa5.76□□□□□ -1.49
TPM3-205ENST00000328159 KRTAP19-6Q3LI70 58 aa5.75□□□□□ -1.49
TPM3-205ENST00000328159 KRTAP12-3P60328 96 aa5.7□□□□□ -1.5
TPM3-205ENST00000328159 A0A0A0MQY5 61 aa5.66□□□□□ -1.5
TPM3-205ENST00000328159 KRTAP4-11Q9BYQ6 195 aa5.65□□□□□ -1.51
TPM3-205ENST00000328159 KRTAP19-5Q3LI72 72 aa5.6□□□□□ -1.51
TPM3-205ENST00000328159 FSIP2Q5CZC0 6907 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 158.4 ms