RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 KRTAP3-1Q9BYR8 98 aa12.54□□□□□ -0.4
SSBP4-201ENST00000270061 CHKB-CPT1BH3BT56 60 aa12.48□□□□□ -0.41
SSBP4-201ENST00000270061 FLGP20930 4061 aaPredicted RBP12.47□□□□□ -0.41
SSBP4-201ENST00000270061 MPLKIPQ8TAP9 179 aa12.46□□□□□ -0.42
SSBP4-201ENST00000270061 Q1T7F1 81 aa12.44□□□□□ -0.42
SSBP4-201ENST00000270061 M0R2T5 61 aa12.41□□□□□ -0.42
SSBP4-201ENST00000270061 V9GYY9 64 aa12.39□□□□□ -0.43
SSBP4-201ENST00000270061 SVIPQ8NHG7 77 aa12.37□□□□□ -0.43
SSBP4-201ENST00000270061 KRTAP10-6P60371 365 aaPredicted RBP12.33□□□□□ -0.44
SSBP4-201ENST00000270061 LCE2DQ5TA82 110 aaPredicted RBP12.33□□□□□ -0.44
SSBP4-201ENST00000270061 LORP23490 312 aaPredicted RBP12.32□□□□□ -0.44
SSBP4-201ENST00000270061 RBM12B-AS1Q9P1G2 102 aa12.3□□□□□ -0.44
SSBP4-201ENST00000270061 LINC01558Q9Y6Z2 57 aa12.28□□□□□ -0.44
SSBP4-201ENST00000270061 SPTSSBQ8NFR3 76 aa12.25□□□□□ -0.45
SSBP4-201ENST00000270061 H1FX-AS1Q4G0G2 97 aa12.22□□□□□ -0.45
SSBP4-201ENST00000270061 KRTAP9-6A0A140TA67 174 aa12.18□□□□□ -0.46
SSBP4-201ENST00000270061 PSPHP1O15172 72 aa12.14□□□□□ -0.47
SSBP4-201ENST00000270061 S4R3F8 94 aa12.13□□□□□ -0.47
SSBP4-201ENST00000270061 PRR15LQ9BU68 103 aa12.13□□□□□ -0.47
SSBP4-201ENST00000270061 FSIP2Q5CZC0 6907 aa12.12□□□□□ -0.47
SSBP4-201ENST00000270061 LCA10Q71F78 164 aa12.11□□□□□ -0.47
SSBP4-201ENST00000270061 KRTAP3-3Q9BYR6 98 aa12.1□□□□□ -0.47
SSBP4-201ENST00000270061 Q5VV11 94 aa12.07□□□□□ -0.48
SSBP4-201ENST00000270061 BRK1Q8WUW1 75 aa12.05□□□□□ -0.48
SSBP4-201ENST00000270061 PRO0628Q9UI54 55 aa12.03□□□□□ -0.48
SSBP4-201ENST00000270061 A0A1B0GU69 56 aa12.02□□□□□ -0.49
SSBP4-201ENST00000270061 CRCT1Q9UGL9 99 aa11.97□□□□□ -0.49
SSBP4-201ENST00000270061 SEC61GP60059 68 aa11.93□□□□□ -0.5
SSBP4-201ENST00000270061 KRTAP9-8Q9BYQ0 159 aa11.92□□□□□ -0.5
SSBP4-201ENST00000270061 CSAG1Q6PB30 78 aa11.87□□□□□ -0.51
SSBP4-201ENST00000270061 A6NED7 52 aa11.79□□□□□ -0.52
SSBP4-201ENST00000270061 MT2AP02795 61 aa11.76□□□□□ -0.53
SSBP4-201ENST00000270061 UQCR11O14957 56 aa11.69□□□□□ -0.54
SSBP4-201ENST00000270061 KRTAP3-2Q9BYR7 98 aa11.69□□□□□ -0.54
SSBP4-201ENST00000270061 MT1FP04733 61 aa11.67□□□□□ -0.54
SSBP4-201ENST00000270061 H0YAA0 97 aa11.67□□□□□ -0.54
SSBP4-201ENST00000270061 CDC42SE1Q9NRR8 79 aa11.66□□□□□ -0.54
SSBP4-201ENST00000270061 A0A1B0GU33 70 aa11.64□□□□□ -0.55
SSBP4-201ENST00000270061 KRTAP10-10P60014 251 aa11.64□□□□□ -0.55
SSBP4-201ENST00000270061 USH2AO75445 5202 aa11.6□□□□□ -0.55
SSBP4-201ENST00000270061 A8MU10 97 aa11.59□□□□□ -0.55
SSBP4-201ENST00000270061 ADM2Q7Z4H4 148 aa11.59□□□□□ -0.55
SSBP4-201ENST00000270061 SPATA8Q6RVD6 105 aa11.59□□□□□ -0.55
SSBP4-201ENST00000270061 MIR22HGQ0VDD5 57 aa11.56□□□□□ -0.56
SSBP4-201ENST00000270061 P0C880 135 aa11.55□□□□□ -0.56
SSBP4-201ENST00000270061 KRTAP9-3Q9BYQ3 159 aa11.54□□□□□ -0.56
SSBP4-201ENST00000270061 SSPOA2VEC9 5147 aa11.48□□□□□ -0.57
SSBP4-201ENST00000270061 LCE2BO14633 110 aa11.46□□□□□ -0.57
SSBP4-201ENST00000270061 PMAIP1Q13794 54 aa11.39□□□□□ -0.59
SSBP4-201ENST00000270061 KRTAP13-4Q3LI77 160 aa11.35□□□□□ -0.59
SSBP4-201ENST00000270061 M0QZ58 72 aa11.31□□□□□ -0.6
SSBP4-201ENST00000270061 A6NN06 94 aa11.24□□□□□ -0.61
SSBP4-201ENST00000270061 KRTAP19-1Q8IUB9 90 aa11.23□□□□□ -0.61
SSBP4-201ENST00000270061 FCGBPQ9Y6R7 5405 aaPredicted RBP11.21□□□□□ -0.61
SSBP4-201ENST00000270061 R4GN34 69 aa11.18□□□□□ -0.62
SSBP4-201ENST00000270061 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.13□□□□□ -0.63
SSBP4-201ENST00000270061 CRIPTQ9P021 101 aa11.12□□□□□ -0.63
SSBP4-201ENST00000270061 A0A0D9SG42 100 aa11.11□□□□□ -0.63
SSBP4-201ENST00000270061 KTN1-AS1Q86SY8 53 aa11.08□□□□□ -0.64
SSBP4-201ENST00000270061 KRTAP19-6Q3LI70 58 aa11.05□□□□□ -0.64
SSBP4-201ENST00000270061 K7ERS5 55 aa11.02□□□□□ -0.65
SSBP4-201ENST00000270061 KRTAP9-7A8MTY7 169 aa10.98□□□□□ -0.65
SSBP4-201ENST00000270061 KRTAP12-1P59990 96 aa10.94□□□□□ -0.66
SSBP4-201ENST00000270061 LINC01554Q52M75 96 aa10.93□□□□□ -0.66
SSBP4-201ENST00000270061 KRTAP12-2P59991 146 aa10.9□□□□□ -0.67
SSBP4-201ENST00000270061 SPINT4Q6UDR6 99 aa10.85□□□□□ -0.67
SSBP4-201ENST00000270061 MACF1Q9UPN3 7388 aaKnown RBP10.85□□□□□ -0.67
SSBP4-201ENST00000270061 SPRR2GQ9BYE4 73 aa10.85□□□□□ -0.67
SSBP4-201ENST00000270061 SYNE2Q8WXH0 6885 aaKnown RBP10.75□□□□□ -0.69
SSBP4-201ENST00000270061 KRTAP19-8Q3LI54 63 aa10.74□□□□□ -0.69
SSBP4-201ENST00000270061 MT1BP07438 61 aa10.73□□□□□ -0.69
SSBP4-201ENST00000270061 PRAC1Q96KF2 57 aa10.6□□□□□ -0.71
SSBP4-201ENST00000270061 ROMO1P60602 79 aa10.59□□□□□ -0.71
SSBP4-201ENST00000270061 KRTAP10-5P60370 271 aa10.48□□□□□ -0.73
SSBP4-201ENST00000270061 PLAC4Q8WY50 150 aa10.47□□□□□ -0.73
SSBP4-201ENST00000270061 CAMK2N1Q7Z7J9 78 aa10.47□□□□□ -0.73
SSBP4-201ENST00000270061 KRTAP6-3Q3LI67 103 aa10.44□□□□□ -0.74
SSBP4-201ENST00000270061 C10orf95Q9H7T3 257 aa10.35□□□□□ -0.75
SSBP4-201ENST00000270061 KRTAP25-1Q3LHN0 102 aa10.25□□□□□ -0.77
SSBP4-201ENST00000270061 PRO2289Q9P1D8 64 aa10.16□□□□□ -0.78
SSBP4-201ENST00000270061 MUC12Q9UKN1 5478 aa10.12□□□□□ -0.79
SSBP4-201ENST00000270061 MT1XP80297 61 aa10.09□□□□□ -0.79
SSBP4-201ENST00000270061 NEBP20929 6669 aa10.02□□□□□ -0.81
SSBP4-201ENST00000270061 TNP1P09430 55 aa10.01□□□□□ -0.81
SSBP4-201ENST00000270061 KRTAP5-9P26371 169 aa10.01□□□□□ -0.81
SSBP4-201ENST00000270061 KMT2DO14686 5537 aa9.99□□□□□ -0.81
SSBP4-201ENST00000270061 MDN1Q9NU22 5596 aa9.86□□□□□ -0.83
SSBP4-201ENST00000270061 KRTAP23-1A1A580 65 aa9.82□□□□□ -0.84
SSBP4-201ENST00000270061 PP632Q6XCG6 107 aa9.81□□□□□ -0.84
SSBP4-201ENST00000270061 SPRR2FQ96RM1 72 aa9.75□□□□□ -0.85
SSBP4-201ENST00000270061 KRTAP8-1Q8IUC2 63 aa9.75□□□□□ -0.85
SSBP4-201ENST00000270061 KRTAP10-7P60409 375 aaPredicted RBP9.64□□□□□ -0.87
SSBP4-201ENST00000270061 KRTAP4-8A0A0G2JLE6 195 aa9.63□□□□□ -0.87
SSBP4-201ENST00000270061 KRTAP20-1Q3LI63 56 aa9.63□□□□□ -0.87
SSBP4-201ENST00000270061 KRTAP4-8Q9BYQ9 185 aa9.63□□□□□ -0.87
SSBP4-201ENST00000270061 KRTAP10-12P60413 245 aa9.59□□□□□ -0.87
SSBP4-201ENST00000270061 SPRR2EP22531 72 aa9.58□□□□□ -0.88
SSBP4-201ENST00000270061 SPRR2BP35325 72 aa9.58□□□□□ -0.88
SSBP4-201ENST00000270061 SPRR2AP35326 72 aa9.58□□□□□ -0.88
SSBP4-201ENST00000270061 LCE3AQ5TA76 89 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms