RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 A6NED7 52 aa8.48□□□□□ -1.05
CCDC40-201ENST00000269318 A8MU10 97 aa8.44□□□□□ -1.06
CCDC40-201ENST00000269318 LCA10Q71F78 164 aa8.44□□□□□ -1.06
CCDC40-201ENST00000269318 CDC42SE1Q9NRR8 79 aa8.39□□□□□ -1.07
CCDC40-201ENST00000269318 KRTAP3-3Q9BYR6 98 aa8.39□□□□□ -1.07
CCDC40-201ENST00000269318 HERC1Q15751 4861 aa8.38□□□□□ -1.07
CCDC40-201ENST00000269318 SEC61BP60468 96 aaKnown RBP8.37□□□□□ -1.07
CCDC40-201ENST00000269318 SEC61GP60059 68 aa8.35□□□□□ -1.07
CCDC40-201ENST00000269318 H1FX-AS1Q4G0G2 97 aa8.34□□□□□ -1.07
CCDC40-201ENST00000269318 S4R3F8 94 aa8.33□□□□□ -1.08
CCDC40-201ENST00000269318 RBM12B-AS1Q9P1G2 102 aa8.31□□□□□ -1.08
CCDC40-201ENST00000269318 UQCR11O14957 56 aa8.3□□□□□ -1.08
CCDC40-201ENST00000269318 SPATA8Q6RVD6 105 aa8.27□□□□□ -1.09
CCDC40-201ENST00000269318 MUC17Q685J3 4493 aa8.27□□□□□ -1.09
CCDC40-201ENST00000269318 KRTAP4-1Q9BYQ7 146 aa8.26□□□□□ -1.09
CCDC40-201ENST00000269318 MIR22HGQ0VDD5 57 aa8.24□□□□□ -1.09
CCDC40-201ENST00000269318 A0A1B0GU33 70 aa8.18□□□□□ -1.1
CCDC40-201ENST00000269318 HMCN2Q8NDA2 5059 aa8.17□□□□□ -1.1
CCDC40-201ENST00000269318 KRTAP10-6P60371 365 aaPredicted RBP8.16□□□□□ -1.1
CCDC40-201ENST00000269318 KRTAP3-2Q9BYR7 98 aa8.15□□□□□ -1.1
CCDC40-201ENST00000269318 H0YAA0 97 aa8.14□□□□□ -1.11
CCDC40-201ENST00000269318 PMAIP1Q13794 54 aa8.13□□□□□ -1.11
CCDC40-201ENST00000269318 KRTAP19-2Q3LHN2 52 aa8.11□□□□□ -1.11
CCDC40-201ENST00000269318 CSAG1Q6PB30 78 aa8.11□□□□□ -1.11
CCDC40-201ENST00000269318 A6NN06 94 aa8.09□□□□□ -1.11
CCDC40-201ENST00000269318 UBR4Q5T4S7 5183 aa8.06□□□□□ -1.12
CCDC40-201ENST00000269318 P0C880 135 aa8.04□□□□□ -1.12
CCDC40-201ENST00000269318 ADM2Q7Z4H4 148 aa8.02□□□□□ -1.13
CCDC40-201ENST00000269318 MUC2Q02817 5179 aa8□□□□□ -1.13
CCDC40-201ENST00000269318 KRTAP13-4Q3LI77 160 aa7.99□□□□□ -1.13
CCDC40-201ENST00000269318 KTN1-AS1Q86SY8 53 aa7.88□□□□□ -1.15
CCDC40-201ENST00000269318 FLGP20930 4061 aaPredicted RBP7.87□□□□□ -1.15
CCDC40-201ENST00000269318 A0A0D9SG42 100 aa7.81□□□□□ -1.16
CCDC40-201ENST00000269318 M0QZ58 72 aa7.8□□□□□ -1.16
CCDC40-201ENST00000269318 LCE2CQ5TA81 110 aa7.79□□□□□ -1.16
CCDC40-201ENST00000269318 K7ERS5 55 aa7.75□□□□□ -1.17
CCDC40-201ENST00000269318 RNF213Q63HN8 5207 aa7.75□□□□□ -1.17
CCDC40-201ENST00000269318 LORP23490 312 aaPredicted RBP7.72□□□□□ -1.17
CCDC40-201ENST00000269318 R4GN34 69 aa7.69□□□□□ -1.18
CCDC40-201ENST00000269318 KRTAP12-2P59991 146 aa7.68□□□□□ -1.18
CCDC40-201ENST00000269318 KRTAP12-1P59990 96 aa7.67□□□□□ -1.18
CCDC40-201ENST00000269318 FAT4Q6V0I7 4981 aa7.65□□□□□ -1.19
CCDC40-201ENST00000269318 PRAC1Q96KF2 57 aa7.63□□□□□ -1.19
CCDC40-201ENST00000269318 MT1HP80294 61 aa7.6□□□□□ -1.19
CCDC40-201ENST00000269318 SPINT4Q6UDR6 99 aa7.59□□□□□ -1.19
CCDC40-201ENST00000269318 LINC01554Q52M75 96 aa7.57□□□□□ -1.2
CCDC40-201ENST00000269318 ROMO1P60602 79 aa7.53□□□□□ -1.2
CCDC40-201ENST00000269318 CRIPTQ9P021 101 aa7.51□□□□□ -1.21
CCDC40-201ENST00000269318 M0R2T5 61 aa7.49□□□□□ -1.21
CCDC40-201ENST00000269318 KRTAP9-8Q9BYQ0 159 aa7.37□□□□□ -1.23
CCDC40-201ENST00000269318 KRTAP25-1Q3LHN0 102 aa7.37□□□□□ -1.23
CCDC40-201ENST00000269318 MT2AP02795 61 aa7.36□□□□□ -1.23
CCDC40-201ENST00000269318 SPRR2GQ9BYE4 73 aa7.34□□□□□ -1.23
CCDC40-201ENST00000269318 KRTAP9-2Q9BYQ4 174 aa7.34□□□□□ -1.23
CCDC40-201ENST00000269318 MT1FP04733 61 aa7.33□□□□□ -1.24
CCDC40-201ENST00000269318 KRTAP19-1Q8IUB9 90 aa7.32□□□□□ -1.24
CCDC40-201ENST00000269318 KRTAP10-10P60014 251 aa7.28□□□□□ -1.24
CCDC40-201ENST00000269318 KRTAP9-6A0A140TA67 174 aa7.27□□□□□ -1.25
CCDC40-201ENST00000269318 C10orf95Q9H7T3 257 aa7.26□□□□□ -1.25
CCDC40-201ENST00000269318 CAMK2N1Q7Z7J9 78 aa7.22□□□□□ -1.25
CCDC40-201ENST00000269318 KRTAP19-8Q3LI54 63 aa7.11□□□□□ -1.27
CCDC40-201ENST00000269318 LCE2AQ5TA79 106 aaPredicted RBP7.11□□□□□ -1.27
CCDC40-201ENST00000269318 PLAC4Q8WY50 150 aa7.1□□□□□ -1.27
CCDC40-201ENST00000269318 KRTAP9-3Q9BYQ3 159 aa7.09□□□□□ -1.27
CCDC40-201ENST00000269318 MT1BP07438 61 aa7□□□□□ -1.29
CCDC40-201ENST00000269318 TNP1P09430 55 aa6.92□□□□□ -1.3
CCDC40-201ENST00000269318 LCE2DQ5TA82 110 aaPredicted RBP6.88□□□□□ -1.31
CCDC40-201ENST00000269318 CRCT1Q9UGL9 99 aa6.87□□□□□ -1.31
CCDC40-201ENST00000269318 PP632Q6XCG6 107 aa6.86□□□□□ -1.31
CCDC40-201ENST00000269318 LCE2BO14633 110 aa6.86□□□□□ -1.31
CCDC40-201ENST00000269318 MT1XP80297 61 aa6.84□□□□□ -1.31
CCDC40-201ENST00000269318 KRTAP10-5P60370 271 aa6.84□□□□□ -1.32
CCDC40-201ENST00000269318 H3BS24 57 aa6.83□□□□□ -1.32
CCDC40-201ENST00000269318 KRTAP23-1A1A580 65 aa6.8□□□□□ -1.32
CCDC40-201ENST00000269318 FSIP2Q5CZC0 6907 aa6.76□□□□□ -1.33
CCDC40-201ENST00000269318 PRO2289Q9P1D8 64 aa6.65□□□□□ -1.34
CCDC40-201ENST00000269318 USH2AO75445 5202 aa6.63□□□□□ -1.35
CCDC40-201ENST00000269318 LCE3AQ5TA76 89 aa6.62□□□□□ -1.35
CCDC40-201ENST00000269318 KRTAP15-1Q3LI76 137 aa6.61□□□□□ -1.35
CCDC40-201ENST00000269318 KRTAP10-7P60409 375 aaPredicted RBP6.58□□□□□ -1.36
CCDC40-201ENST00000269318 KRTAP10-12P60413 245 aa6.54□□□□□ -1.36
CCDC40-201ENST00000269318 KRTAP8-1Q8IUC2 63 aa6.51□□□□□ -1.37
CCDC40-201ENST00000269318 KRTAP9-7A8MTY7 169 aa6.48□□□□□ -1.37
CCDC40-201ENST00000269318 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.41□□□□□ -1.38
CCDC40-201ENST00000269318 SSPOA2VEC9 5147 aa6.4□□□□□ -1.39
CCDC40-201ENST00000269318 KRTAP12-3P60328 96 aa6.34□□□□□ -1.39
CCDC40-201ENST00000269318 KRTAP19-6Q3LI70 58 aa6.34□□□□□ -1.39
CCDC40-201ENST00000269318 KRTAP4-8A0A0G2JLE6 195 aa6.27□□□□□ -1.41
CCDC40-201ENST00000269318 KRTAP4-8Q9BYQ9 185 aa6.27□□□□□ -1.41
CCDC40-201ENST00000269318 KMT2DO14686 5537 aa6.26□□□□□ -1.41
CCDC40-201ENST00000269318 SPRR5A0A1B0GTR4 108 aa6.26□□□□□ -1.41
CCDC40-201ENST00000269318 KRTAP19-5Q3LI72 72 aa6.24□□□□□ -1.41
CCDC40-201ENST00000269318 NDUFAF8A1L188 74 aa6.19□□□□□ -1.42
CCDC40-201ENST00000269318 FCGBPQ9Y6R7 5405 aaPredicted RBP6.13□□□□□ -1.43
CCDC40-201ENST00000269318 KRTAP19-7Q3SYF9 63 aa6.11□□□□□ -1.43
CCDC40-201ENST00000269318 LUZP6Q538Z0 58 aa6.08□□□□□ -1.44
CCDC40-201ENST00000269318 MACF1Q9UPN3 7388 aaKnown RBP6.01□□□□□ -1.45
CCDC40-201ENST00000269318 A0A0A0MQY5 61 aa5.98□□□□□ -1.45
CCDC40-201ENST00000269318 SYNE2Q8WXH0 6885 aaKnown RBP5.97□□□□□ -1.45
CCDC40-201ENST00000269318 MT1EP04732 61 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms