RNA–Protein interactions for RNA: ENST00000258781.10

CCM2-201, Transcript of CCM2 scaffold protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCM2, Length 1,894 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-201ENST00000258781 A0A1B0GU69 56 aa14.11□□□□□ -0.15
CCM2-201ENST00000258781 SEC61BP60468 96 aaKnown RBP14.08□□□□□ -0.16
CCM2-201ENST00000258781 PRO0628Q9UI54 55 aa14.05□□□□□ -0.16
CCM2-201ENST00000258781 A6NED7 52 aa14.03□□□□□ -0.16
CCM2-201ENST00000258781 UBR4Q5T4S7 5183 aa14.01□□□□□ -0.17
CCM2-201ENST00000258781 MUC2Q02817 5179 aa13.98□□□□□ -0.17
CCM2-201ENST00000258781 KRTAP4-1Q9BYQ7 146 aa13.95□□□□□ -0.18
CCM2-201ENST00000258781 RBM12B-AS1Q9P1G2 102 aa13.94□□□□□ -0.18
CCM2-201ENST00000258781 SEC61GP60059 68 aa13.93□□□□□ -0.18
CCM2-201ENST00000258781 H1FX-AS1Q4G0G2 97 aa13.92□□□□□ -0.18
CCM2-201ENST00000258781 S4R3F8 94 aa13.91□□□□□ -0.18
CCM2-201ENST00000258781 LCA10Q71F78 164 aa13.89□□□□□ -0.19
CCM2-201ENST00000258781 KRTAP3-3Q9BYR6 98 aa13.87□□□□□ -0.19
CCM2-201ENST00000258781 CDC42SE1Q9NRR8 79 aa13.85□□□□□ -0.19
CCM2-201ENST00000258781 RNF213Q63HN8 5207 aa13.79□□□□□ -0.2
CCM2-201ENST00000258781 A8MU10 97 aa13.79□□□□□ -0.2
CCM2-201ENST00000258781 UQCR11O14957 56 aa13.76□□□□□ -0.21
CCM2-201ENST00000258781 SVIPQ8NHG7 77 aa13.72□□□□□ -0.21
CCM2-201ENST00000258781 SPATA8Q6RVD6 105 aa13.67□□□□□ -0.22
CCM2-201ENST00000258781 MIR22HGQ0VDD5 57 aa13.63□□□□□ -0.23
CCM2-201ENST00000258781 A0A1B0GU33 70 aa13.57□□□□□ -0.24
CCM2-201ENST00000258781 CSAG1Q6PB30 78 aa13.55□□□□□ -0.24
CCM2-201ENST00000258781 KRTAP19-2Q3LHN2 52 aa13.53□□□□□ -0.24
CCM2-201ENST00000258781 KRTAP10-6P60371 365 aaPredicted RBP13.48□□□□□ -0.25
CCM2-201ENST00000258781 KRTAP3-2Q9BYR7 98 aa13.48□□□□□ -0.25
CCM2-201ENST00000258781 H0YAA0 97 aa13.42□□□□□ -0.26
CCM2-201ENST00000258781 FAT4Q6V0I7 4981 aa13.4□□□□□ -0.26
CCM2-201ENST00000258781 PMAIP1Q13794 54 aa13.38□□□□□ -0.27
CCM2-201ENST00000258781 FLGP20930 4061 aaPredicted RBP13.35□□□□□ -0.27
CCM2-201ENST00000258781 ADM2Q7Z4H4 148 aa13.33□□□□□ -0.28
CCM2-201ENST00000258781 P0C880 135 aa13.31□□□□□ -0.28
CCM2-201ENST00000258781 LCE2CQ5TA81 110 aa13.29□□□□□ -0.28
CCM2-201ENST00000258781 A6NN06 94 aa13.28□□□□□ -0.28
CCM2-201ENST00000258781 KRTAP13-4Q3LI77 160 aa13.16□□□□□ -0.3
CCM2-201ENST00000258781 M0QZ58 72 aa13.02□□□□□ -0.32
CCM2-201ENST00000258781 MT1HP80294 61 aa13.02□□□□□ -0.32
CCM2-201ENST00000258781 KTN1-AS1Q86SY8 53 aa12.96□□□□□ -0.33
CCM2-201ENST00000258781 K7ERS5 55 aa12.95□□□□□ -0.34
CCM2-201ENST00000258781 A0A0D9SG42 100 aa12.94□□□□□ -0.34
CCM2-201ENST00000258781 M0R2T5 61 aa12.82□□□□□ -0.36
CCM2-201ENST00000258781 R4GN34 69 aa12.82□□□□□ -0.36
CCM2-201ENST00000258781 LORP23490 312 aaPredicted RBP12.75□□□□□ -0.37
CCM2-201ENST00000258781 KRTAP12-1P59990 96 aa12.7□□□□□ -0.38
CCM2-201ENST00000258781 LCE2AQ5TA79 106 aaPredicted RBP12.68□□□□□ -0.38
CCM2-201ENST00000258781 KRTAP12-2P59991 146 aa12.67□□□□□ -0.38
CCM2-201ENST00000258781 SPINT4Q6UDR6 99 aa12.61□□□□□ -0.39
CCM2-201ENST00000258781 CRIPTQ9P021 101 aa12.6□□□□□ -0.39
CCM2-201ENST00000258781 LINC01554Q52M75 96 aa12.59□□□□□ -0.39
CCM2-201ENST00000258781 KRTAP9-8Q9BYQ0 159 aa12.51□□□□□ -0.41
CCM2-201ENST00000258781 PRAC1Q96KF2 57 aa12.5□□□□□ -0.41
CCM2-201ENST00000258781 ROMO1P60602 79 aa12.48□□□□□ -0.41
CCM2-201ENST00000258781 MT2AP02795 61 aa12.44□□□□□ -0.42
CCM2-201ENST00000258781 MT1FP04733 61 aa12.4□□□□□ -0.42
CCM2-201ENST00000258781 KRTAP10-10P60014 251 aa12.29□□□□□ -0.44
CCM2-201ENST00000258781 SPRR2GQ9BYE4 73 aa12.24□□□□□ -0.45
CCM2-201ENST00000258781 KRTAP19-1Q8IUB9 90 aa12.15□□□□□ -0.46
CCM2-201ENST00000258781 KRTAP25-1Q3LHN0 102 aa12.14□□□□□ -0.47
CCM2-201ENST00000258781 CAMK2N1Q7Z7J9 78 aa12.06□□□□□ -0.48
CCM2-201ENST00000258781 KRTAP9-3Q9BYQ3 159 aa12.06□□□□□ -0.48
CCM2-201ENST00000258781 C10orf95Q9H7T3 257 aa11.99□□□□□ -0.49
CCM2-201ENST00000258781 PLAC4Q8WY50 150 aa11.91□□□□□ -0.5
CCM2-201ENST00000258781 KRTAP19-8Q3LI54 63 aa11.86□□□□□ -0.51
CCM2-201ENST00000258781 LCE2BO14633 110 aa11.79□□□□□ -0.52
CCM2-201ENST00000258781 USH2AO75445 5202 aa11.69□□□□□ -0.54
CCM2-201ENST00000258781 MT1BP07438 61 aa11.68□□□□□ -0.54
CCM2-201ENST00000258781 TNP1P09430 55 aa11.55□□□□□ -0.56
CCM2-201ENST00000258781 LCE2DQ5TA82 110 aaPredicted RBP11.52□□□□□ -0.57
CCM2-201ENST00000258781 PP632Q6XCG6 107 aa11.44□□□□□ -0.58
CCM2-201ENST00000258781 FSIP2Q5CZC0 6907 aa11.42□□□□□ -0.58
CCM2-201ENST00000258781 MT1XP80297 61 aa11.37□□□□□ -0.59
CCM2-201ENST00000258781 SSPOA2VEC9 5147 aa11.36□□□□□ -0.59
CCM2-201ENST00000258781 KRTAP10-5P60370 271 aa11.36□□□□□ -0.59
CCM2-201ENST00000258781 KRTAP23-1A1A580 65 aa11.35□□□□□ -0.59
CCM2-201ENST00000258781 KRTAP9-2Q9BYQ4 174 aa11.25□□□□□ -0.61
CCM2-201ENST00000258781 PRO2289Q9P1D8 64 aa11.2□□□□□ -0.62
CCM2-201ENST00000258781 KRTAP19-6Q3LI70 58 aa11.06□□□□□ -0.64
CCM2-201ENST00000258781 LCE3AQ5TA76 89 aa10.99□□□□□ -0.65
CCM2-201ENST00000258781 KRTAP10-7P60409 375 aaPredicted RBP10.91□□□□□ -0.66
CCM2-201ENST00000258781 KRTAP10-12P60413 245 aa10.91□□□□□ -0.66
CCM2-201ENST00000258781 FCGBPQ9Y6R7 5405 aaPredicted RBP10.88□□□□□ -0.67
CCM2-201ENST00000258781 KRTAP15-1Q3LI76 137 aa10.84□□□□□ -0.67
CCM2-201ENST00000258781 KRTAP8-1Q8IUC2 63 aa10.81□□□□□ -0.68
CCM2-201ENST00000258781 CRCT1Q9UGL9 99 aa10.79□□□□□ -0.68
CCM2-201ENST00000258781 KMT2DO14686 5537 aa10.7□□□□□ -0.7
CCM2-201ENST00000258781 KRTAP12-3P60328 96 aa10.54□□□□□ -0.72
CCM2-201ENST00000258781 KRTAP4-8A0A0G2JLE6 195 aa10.47□□□□□ -0.73
CCM2-201ENST00000258781 KRTAP4-8Q9BYQ9 185 aa10.47□□□□□ -0.73
CCM2-201ENST00000258781 KRTAP9-6A0A140TA67 174 aa10.42□□□□□ -0.74
CCM2-201ENST00000258781 MACF1Q9UPN3 7388 aaKnown RBP10.38□□□□□ -0.75
CCM2-201ENST00000258781 KRTAP19-5Q3LI72 72 aa10.35□□□□□ -0.75
CCM2-201ENST00000258781 SPRR5A0A1B0GTR4 108 aa10.31□□□□□ -0.76
CCM2-201ENST00000258781 SYNE2Q8WXH0 6885 aaKnown RBP10.16□□□□□ -0.78
CCM2-201ENST00000258781 NDUFAF8A1L188 74 aa10.14□□□□□ -0.79
CCM2-201ENST00000258781 KRTAP19-7Q3SYF9 63 aa10.13□□□□□ -0.79
CCM2-201ENST00000258781 LUZP6Q538Z0 58 aa10.11□□□□□ -0.79
CCM2-201ENST00000258781 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.02□□□□□ -0.8
CCM2-201ENST00000258781 MT1EP04732 61 aa9.93□□□□□ -0.82
CCM2-201ENST00000258781 MUC12Q9UKN1 5478 aa9.91□□□□□ -0.82
CCM2-201ENST00000258781 LCE3CQ5T5A8 94 aa9.88□□□□□ -0.83
CCM2-201ENST00000258781 KRTAP19-4Q3LI73 84 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms