RNA–Protein interactions for RNA: ENST00000249499.7

HOXD9-201, Transcript of homeobox D9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD9, Length 1,870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9-201ENST00000249499 CDC42SE1Q9NRR8 79 aa11.97□□□□□ -0.49
HOXD9-201ENST00000249499 LCA10Q71F78 164 aa11.93□□□□□ -0.5
HOXD9-201ENST00000249499 A8MU10 97 aa11.87□□□□□ -0.51
HOXD9-201ENST00000249499 HMCN2Q8NDA2 5059 aa11.85□□□□□ -0.51
HOXD9-201ENST00000249499 SEC61GP60059 68 aa11.82□□□□□ -0.52
HOXD9-201ENST00000249499 UQCR11O14957 56 aa11.76□□□□□ -0.53
HOXD9-201ENST00000249499 PMAIP1Q13794 54 aa11.71□□□□□ -0.53
HOXD9-201ENST00000249499 SPATA8Q6RVD6 105 aa11.69□□□□□ -0.54
HOXD9-201ENST00000249499 MIR22HGQ0VDD5 57 aa11.66□□□□□ -0.54
HOXD9-201ENST00000249499 LRP2P98164 4655 aa11.59□□□□□ -0.55
HOXD9-201ENST00000249499 LPAP08519 4548 aa11.59□□□□□ -0.55
HOXD9-201ENST00000249499 S4R3F8 94 aa11.57□□□□□ -0.56
HOXD9-201ENST00000249499 H1FX-AS1Q4G0G2 97 aa11.56□□□□□ -0.56
HOXD9-201ENST00000249499 KRTAP3-3Q9BYR6 98 aa11.56□□□□□ -0.56
HOXD9-201ENST00000249499 A6NN06 94 aa11.55□□□□□ -0.56
HOXD9-201ENST00000249499 UBR4Q5T4S7 5183 aa11.55□□□□□ -0.56
HOXD9-201ENST00000249499 SEC61BP60468 96 aaKnown RBP11.54□□□□□ -0.56
HOXD9-201ENST00000249499 RBM12B-AS1Q9P1G2 102 aa11.53□□□□□ -0.56
HOXD9-201ENST00000249499 A0A1B0GU33 70 aa11.47□□□□□ -0.57
HOXD9-201ENST00000249499 KTN1-AS1Q86SY8 53 aa11.4□□□□□ -0.58
HOXD9-201ENST00000249499 H0YAA0 97 aa11.36□□□□□ -0.59
HOXD9-201ENST00000249499 KRTAP10-6P60371 365 aaPredicted RBP11.31□□□□□ -0.6
HOXD9-201ENST00000249499 RNF213Q63HN8 5207 aa11.29□□□□□ -0.6
HOXD9-201ENST00000249499 CSAG1Q6PB30 78 aa11.27□□□□□ -0.61
HOXD9-201ENST00000249499 KRTAP3-2Q9BYR7 98 aa11.27□□□□□ -0.61
HOXD9-201ENST00000249499 KRTAP4-1Q9BYQ7 146 aa11.17□□□□□ -0.62
HOXD9-201ENST00000249499 MUC17Q685J3 4493 aa11.17□□□□□ -0.62
HOXD9-201ENST00000249499 MUC2Q02817 5179 aa11.12□□□□□ -0.63
HOXD9-201ENST00000249499 ADM2Q7Z4H4 148 aa11.1□□□□□ -0.63
HOXD9-201ENST00000249499 P0C880 135 aa11.09□□□□□ -0.63
HOXD9-201ENST00000249499 K7ERS5 55 aa11.08□□□□□ -0.64
HOXD9-201ENST00000249499 KRTAP13-4Q3LI77 160 aa11.02□□□□□ -0.64
HOXD9-201ENST00000249499 KRTAP19-2Q3LHN2 52 aa11.02□□□□□ -0.65
HOXD9-201ENST00000249499 M0QZ58 72 aa10.94□□□□□ -0.66
HOXD9-201ENST00000249499 A0A0D9SG42 100 aa10.87□□□□□ -0.67
HOXD9-201ENST00000249499 PRAC1Q96KF2 57 aa10.87□□□□□ -0.67
HOXD9-201ENST00000249499 FAT4Q6V0I7 4981 aa10.73□□□□□ -0.69
HOXD9-201ENST00000249499 R4GN34 69 aa10.69□□□□□ -0.7
HOXD9-201ENST00000249499 KRTAP12-1P59990 96 aa10.67□□□□□ -0.7
HOXD9-201ENST00000249499 ROMO1P60602 79 aa10.67□□□□□ -0.7
HOXD9-201ENST00000249499 KRTAP12-2P59991 146 aa10.64□□□□□ -0.71
HOXD9-201ENST00000249499 FLGP20930 4061 aaPredicted RBP10.62□□□□□ -0.71
HOXD9-201ENST00000249499 SPINT4Q6UDR6 99 aa10.59□□□□□ -0.71
HOXD9-201ENST00000249499 LCE2CQ5TA81 110 aa10.54□□□□□ -0.72
HOXD9-201ENST00000249499 LORP23490 312 aaPredicted RBP10.53□□□□□ -0.72
HOXD9-201ENST00000249499 KRTAP25-1Q3LHN0 102 aa10.53□□□□□ -0.72
HOXD9-201ENST00000249499 CRIPTQ9P021 101 aa10.48□□□□□ -0.73
HOXD9-201ENST00000249499 LINC01554Q52M75 96 aa10.47□□□□□ -0.73
HOXD9-201ENST00000249499 LCE2AQ5TA79 106 aaPredicted RBP10.42□□□□□ -0.74
HOXD9-201ENST00000249499 MT1HP80294 61 aa10.3□□□□□ -0.76
HOXD9-201ENST00000249499 M0R2T5 61 aa10.23□□□□□ -0.77
HOXD9-201ENST00000249499 SPRR2GQ9BYE4 73 aa10.1□□□□□ -0.79
HOXD9-201ENST00000249499 C10orf95Q9H7T3 257 aa10.09□□□□□ -0.79
HOXD9-201ENST00000249499 CAMK2N1Q7Z7J9 78 aa10.06□□□□□ -0.8
HOXD9-201ENST00000249499 MT2AP02795 61 aa10□□□□□ -0.81
HOXD9-201ENST00000249499 KRTAP9-8Q9BYQ0 159 aa10□□□□□ -0.81
HOXD9-201ENST00000249499 KRTAP19-1Q8IUB9 90 aa9.98□□□□□ -0.81
HOXD9-201ENST00000249499 MT1FP04733 61 aa9.95□□□□□ -0.82
HOXD9-201ENST00000249499 KRTAP10-10P60014 251 aa9.93□□□□□ -0.82
HOXD9-201ENST00000249499 PLAC4Q8WY50 150 aa9.86□□□□□ -0.83
HOXD9-201ENST00000249499 KRTAP9-2Q9BYQ4 174 aa9.81□□□□□ -0.84
HOXD9-201ENST00000249499 KRTAP19-8Q3LI54 63 aa9.76□□□□□ -0.85
HOXD9-201ENST00000249499 PP632Q6XCG6 107 aa9.74□□□□□ -0.85
HOXD9-201ENST00000249499 TNP1P09430 55 aa9.69□□□□□ -0.86
HOXD9-201ENST00000249499 LCE2DQ5TA82 110 aaPredicted RBP9.68□□□□□ -0.86
HOXD9-201ENST00000249499 KRTAP23-1A1A580 65 aa9.63□□□□□ -0.87
HOXD9-201ENST00000249499 KRTAP9-3Q9BYQ3 159 aa9.62□□□□□ -0.87
HOXD9-201ENST00000249499 FSIP2Q5CZC0 6907 aa9.6□□□□□ -0.87
HOXD9-201ENST00000249499 MT1BP07438 61 aa9.55□□□□□ -0.88
HOXD9-201ENST00000249499 KRTAP15-1Q3LI76 137 aa9.45□□□□□ -0.9
HOXD9-201ENST00000249499 USH2AO75445 5202 aa9.43□□□□□ -0.9
HOXD9-201ENST00000249499 KRTAP10-5P60370 271 aa9.35□□□□□ -0.91
HOXD9-201ENST00000249499 MT1XP80297 61 aa9.35□□□□□ -0.91
HOXD9-201ENST00000249499 LCE2BO14633 110 aa9.34□□□□□ -0.91
HOXD9-201ENST00000249499 KRTAP9-6A0A140TA67 174 aa9.32□□□□□ -0.92
HOXD9-201ENST00000249499 CRCT1Q9UGL9 99 aa9.31□□□□□ -0.92
HOXD9-201ENST00000249499 SSPOA2VEC9 5147 aa9.3□□□□□ -0.92
HOXD9-201ENST00000249499 PRO2289Q9P1D8 64 aa9.24□□□□□ -0.93
HOXD9-201ENST00000249499 LCE3AQ5TA76 89 aa9.15□□□□□ -0.95
HOXD9-201ENST00000249499 KRTAP10-12P60413 245 aa9.04□□□□□ -0.96
HOXD9-201ENST00000249499 KRTAP8-1Q8IUC2 63 aa9.04□□□□□ -0.96
HOXD9-201ENST00000249499 FCGBPQ9Y6R7 5405 aaPredicted RBP8.98□□□□□ -0.97
HOXD9-201ENST00000249499 KRTAP10-7P60409 375 aaPredicted RBP8.98□□□□□ -0.97
HOXD9-201ENST00000249499 NDUFAF8A1L188 74 aa8.97□□□□□ -0.97
HOXD9-201ENST00000249499 H3BS24 57 aa8.88□□□□□ -0.99
HOXD9-201ENST00000249499 KRTAP19-6Q3LI70 58 aa8.88□□□□□ -0.99
HOXD9-201ENST00000249499 LUZP6Q538Z0 58 aa8.83□□□□□ -1
HOXD9-201ENST00000249499 SPRR5A0A1B0GTR4 108 aa8.81□□□□□ -1
HOXD9-201ENST00000249499 KRTAP12-3P60328 96 aa8.79□□□□□ -1
HOXD9-201ENST00000249499 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.66□□□□□ -1.02
HOXD9-201ENST00000249499 MACF1Q9UPN3 7388 aaKnown RBP8.65□□□□□ -1.02
HOXD9-201ENST00000249499 KRTAP19-5Q3LI72 72 aa8.55□□□□□ -1.04
HOXD9-201ENST00000249499 SYNE2Q8WXH0 6885 aaKnown RBP8.5□□□□□ -1.05
HOXD9-201ENST00000249499 KRTAP4-8A0A0G2JLE6 195 aa8.47□□□□□ -1.05
HOXD9-201ENST00000249499 KRTAP4-8Q9BYQ9 185 aa8.47□□□□□ -1.05
HOXD9-201ENST00000249499 KRTAP9-7A8MTY7 169 aa8.44□□□□□ -1.06
HOXD9-201ENST00000249499 KRTAP19-7Q3SYF9 63 aa8.34□□□□□ -1.07
HOXD9-201ENST00000249499 KRTAP19-4Q3LI73 84 aa8.3□□□□□ -1.08
HOXD9-201ENST00000249499 KMT2DO14686 5537 aa8.29□□□□□ -1.08
HOXD9-201ENST00000249499 LCE3CQ5T5A8 94 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms