RNA–Protein interactions for RNA: ENST00000238379.9

HDHD3-201, Transcript of haloacid dehalogenase like hydrolase domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDHD3, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDHD3-201ENST00000238379 MUC17Q685J3 4493 aa7.64□□□□□ -1.19
HDHD3-201ENST00000238379 H1FX-AS1Q4G0G2 97 aa7.62□□□□□ -1.19
HDHD3-201ENST00000238379 V9GYY9 64 aa7.61□□□□□ -1.19
HDHD3-201ENST00000238379 LINC01558Q9Y6Z2 57 aa7.59□□□□□ -1.19
HDHD3-201ENST00000238379 LCA10Q71F78 164 aa7.57□□□□□ -1.2
HDHD3-201ENST00000238379 SPTSSBQ8NFR3 76 aa7.57□□□□□ -1.2
HDHD3-201ENST00000238379 S4R3F8 94 aa7.55□□□□□ -1.2
HDHD3-201ENST00000238379 PSPHP1O15172 72 aa7.54□□□□□ -1.2
HDHD3-201ENST00000238379 KRTAP19-2Q3LHN2 52 aa7.54□□□□□ -1.2
HDHD3-201ENST00000238379 PRR15LQ9BU68 103 aa7.52□□□□□ -1.21
HDHD3-201ENST00000238379 LCE2BO14633 110 aa7.51□□□□□ -1.21
HDHD3-201ENST00000238379 MUC2Q02817 5179 aa7.5□□□□□ -1.21
HDHD3-201ENST00000238379 Q5VV11 94 aa7.48□□□□□ -1.21
HDHD3-201ENST00000238379 LCE2CQ5TA81 110 aa7.45□□□□□ -1.22
HDHD3-201ENST00000238379 A0A1B0GU69 56 aa7.45□□□□□ -1.22
HDHD3-201ENST00000238379 A0A0A0MQY5 61 aa7.44□□□□□ -1.22
HDHD3-201ENST00000238379 UBR4Q5T4S7 5183 aa7.44□□□□□ -1.22
HDHD3-201ENST00000238379 LCE2AQ5TA79 106 aaPredicted RBP7.42□□□□□ -1.22
HDHD3-201ENST00000238379 CSAG1Q6PB30 78 aa7.38□□□□□ -1.23
HDHD3-201ENST00000238379 SEC61GP60059 68 aa7.38□□□□□ -1.23
HDHD3-201ENST00000238379 RNF213Q63HN8 5207 aa7.36□□□□□ -1.23
HDHD3-201ENST00000238379 A6NED7 52 aa7.29□□□□□ -1.24
HDHD3-201ENST00000238379 KRTAP10-6P60371 365 aaPredicted RBP7.29□□□□□ -1.24
HDHD3-201ENST00000238379 FLGP20930 4061 aaPredicted RBP7.26□□□□□ -1.25
HDHD3-201ENST00000238379 H0YAA0 97 aa7.24□□□□□ -1.25
HDHD3-201ENST00000238379 ADM2Q7Z4H4 148 aa7.24□□□□□ -1.25
HDHD3-201ENST00000238379 BRK1Q8WUW1 75 aa7.24□□□□□ -1.25
HDHD3-201ENST00000238379 UQCR11O14957 56 aa7.23□□□□□ -1.25
HDHD3-201ENST00000238379 A0A1B0GU33 70 aa7.22□□□□□ -1.25
HDHD3-201ENST00000238379 P0C880 135 aa7.22□□□□□ -1.25
HDHD3-201ENST00000238379 LORP23490 312 aaPredicted RBP7.21□□□□□ -1.26
HDHD3-201ENST00000238379 A8MU10 97 aa7.19□□□□□ -1.26
HDHD3-201ENST00000238379 FAT4Q6V0I7 4981 aa7.18□□□□□ -1.26
HDHD3-201ENST00000238379 MT1HP80294 61 aa7.17□□□□□ -1.26
HDHD3-201ENST00000238379 CDC42SE1Q9NRR8 79 aa7.17□□□□□ -1.26
HDHD3-201ENST00000238379 SPATA8Q6RVD6 105 aa7.16□□□□□ -1.26
HDHD3-201ENST00000238379 MIR22HGQ0VDD5 57 aa7.15□□□□□ -1.26
HDHD3-201ENST00000238379 KRTAP13-4Q3LI77 160 aa7.1□□□□□ -1.27
HDHD3-201ENST00000238379 PRO0628Q9UI54 55 aa7.09□□□□□ -1.27
HDHD3-201ENST00000238379 M0R2T5 61 aa7.08□□□□□ -1.28
HDHD3-201ENST00000238379 KRTAP23-1A1A580 65 aa7.06□□□□□ -1.28
HDHD3-201ENST00000238379 M0QZ58 72 aa7.01□□□□□ -1.29
HDHD3-201ENST00000238379 R4GN34 69 aa6.97□□□□□ -1.29
HDHD3-201ENST00000238379 A0A0D9SG42 100 aa6.94□□□□□ -1.3
HDHD3-201ENST00000238379 KRTAP9-8Q9BYQ0 159 aa6.93□□□□□ -1.3
HDHD3-201ENST00000238379 MT2AP02795 61 aa6.9□□□□□ -1.3
HDHD3-201ENST00000238379 CRIPTQ9P021 101 aa6.9□□□□□ -1.31
HDHD3-201ENST00000238379 MT1FP04733 61 aa6.86□□□□□ -1.31
HDHD3-201ENST00000238379 PMAIP1Q13794 54 aa6.85□□□□□ -1.31
HDHD3-201ENST00000238379 LINC01554Q52M75 96 aa6.85□□□□□ -1.31
HDHD3-201ENST00000238379 KRTAP10-10P60014 251 aa6.83□□□□□ -1.32
HDHD3-201ENST00000238379 A6NN06 94 aa6.82□□□□□ -1.32
HDHD3-201ENST00000238379 KRTAP12-1P59990 96 aa6.82□□□□□ -1.32
HDHD3-201ENST00000238379 KRTAP12-2P59991 146 aa6.8□□□□□ -1.32
HDHD3-201ENST00000238379 K7ERS5 55 aa6.79□□□□□ -1.32
HDHD3-201ENST00000238379 SPRR2GQ9BYE4 73 aa6.78□□□□□ -1.32
HDHD3-201ENST00000238379 SPINT4Q6UDR6 99 aa6.77□□□□□ -1.33
HDHD3-201ENST00000238379 KRTAP19-1Q8IUB9 90 aa6.77□□□□□ -1.33
HDHD3-201ENST00000238379 KRTAP9-3Q9BYQ3 159 aa6.67□□□□□ -1.34
HDHD3-201ENST00000238379 KRTAP19-8Q3LI54 63 aa6.6□□□□□ -1.35
HDHD3-201ENST00000238379 KTN1-AS1Q86SY8 53 aa6.56□□□□□ -1.36
HDHD3-201ENST00000238379 ROMO1P60602 79 aa6.55□□□□□ -1.36
HDHD3-201ENST00000238379 CAMK2N1Q7Z7J9 78 aa6.53□□□□□ -1.36
HDHD3-201ENST00000238379 PLAC4Q8WY50 150 aa6.53□□□□□ -1.36
HDHD3-201ENST00000238379 MT1BP07438 61 aa6.51□□□□□ -1.37
HDHD3-201ENST00000238379 C10orf95Q9H7T3 257 aa6.46□□□□□ -1.38
HDHD3-201ENST00000238379 PRAC1Q96KF2 57 aa6.42□□□□□ -1.38
HDHD3-201ENST00000238379 MT1XP80297 61 aa6.31□□□□□ -1.4
HDHD3-201ENST00000238379 KRTAP10-5P60370 271 aa6.3□□□□□ -1.4
HDHD3-201ENST00000238379 USH2AO75445 5202 aa6.27□□□□□ -1.41
HDHD3-201ENST00000238379 KRTAP25-1Q3LHN0 102 aa6.26□□□□□ -1.41
HDHD3-201ENST00000238379 TNP1P09430 55 aa6.22□□□□□ -1.41
HDHD3-201ENST00000238379 PRO2289Q9P1D8 64 aa6.19□□□□□ -1.42
HDHD3-201ENST00000238379 KRTAP19-6Q3LI70 58 aa6.06□□□□□ -1.44
HDHD3-201ENST00000238379 FSIP2Q5CZC0 6907 aa6.06□□□□□ -1.44
HDHD3-201ENST00000238379 KRTAP10-7P60409 375 aaPredicted RBP6.06□□□□□ -1.44
HDHD3-201ENST00000238379 SSPOA2VEC9 5147 aa6.05□□□□□ -1.44
HDHD3-201ENST00000238379 PP632Q6XCG6 107 aa6.04□□□□□ -1.44
HDHD3-201ENST00000238379 KRTAP19-4Q3LI73 84 aa6□□□□□ -1.45
HDHD3-201ENST00000238379 KRTAP10-12P60413 245 aa5.97□□□□□ -1.45
HDHD3-201ENST00000238379 LCE3AQ5TA76 89 aa5.97□□□□□ -1.45
HDHD3-201ENST00000238379 KRTAP9-2Q9BYQ4 174 aa5.95□□□□□ -1.46
HDHD3-201ENST00000238379 KRTAP8-1Q8IUC2 63 aa5.85□□□□□ -1.47
HDHD3-201ENST00000238379 KRTAP4-8A0A0G2JLE6 195 aa5.83□□□□□ -1.48
HDHD3-201ENST00000238379 KRTAP4-8Q9BYQ9 185 aa5.83□□□□□ -1.48
HDHD3-201ENST00000238379 FCGBPQ9Y6R7 5405 aaPredicted RBP5.82□□□□□ -1.48
HDHD3-201ENST00000238379 KMT2DO14686 5537 aa5.75□□□□□ -1.49
HDHD3-201ENST00000238379 CRCT1Q9UGL9 99 aa5.74□□□□□ -1.49
HDHD3-201ENST00000238379 KRTAP12-3P60328 96 aa5.73□□□□□ -1.49
HDHD3-201ENST00000238379 KRTAP15-1Q3LI76 137 aa5.71□□□□□ -1.49
HDHD3-201ENST00000238379 KRTAP19-5Q3LI72 72 aa5.7□□□□□ -1.5
HDHD3-201ENST00000238379 KRTAP19-7Q3SYF9 63 aa5.63□□□□□ -1.51
HDHD3-201ENST00000238379 MACF1Q9UPN3 7388 aaKnown RBP5.52□□□□□ -1.53
HDHD3-201ENST00000238379 MT1EP04732 61 aa5.52□□□□□ -1.53
HDHD3-201ENST00000238379 KRTAP9-6A0A140TA67 174 aa5.46□□□□□ -1.54
HDHD3-201ENST00000238379 NDUFAF8A1L188 74 aa5.41□□□□□ -1.54
HDHD3-201ENST00000238379 MT1LQ93083 61 aa5.41□□□□□ -1.54
HDHD3-201ENST00000238379 SPRR5A0A1B0GTR4 108 aa5.41□□□□□ -1.54
HDHD3-201ENST00000238379 SYNE2Q8WXH0 6885 aaKnown RBP5.38□□□□□ -1.55
HDHD3-201ENST00000238379 SPRR2FQ96RM1 72 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms