RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 SVIPQ8NHG7 77 aa8.99□□□□□ -0.97
VRK1-201ENST00000216639 PRO0628Q9UI54 55 aa8.96□□□□□ -0.98
VRK1-201ENST00000216639 A6NED7 52 aa8.94□□□□□ -0.98
VRK1-201ENST00000216639 SEC61BP60468 96 aaKnown RBP8.91□□□□□ -0.98
VRK1-201ENST00000216639 SEC61GP60059 68 aa8.9□□□□□ -0.98
VRK1-201ENST00000216639 RBM12B-AS1Q9P1G2 102 aa8.85□□□□□ -0.99
VRK1-201ENST00000216639 LCE2AQ5TA79 106 aaPredicted RBP8.84□□□□□ -0.99
VRK1-201ENST00000216639 LCE2CQ5TA81 110 aa8.81□□□□□ -1
VRK1-201ENST00000216639 CDC42SE1Q9NRR8 79 aa8.81□□□□□ -1
VRK1-201ENST00000216639 S4R3F8 94 aa8.81□□□□□ -1
VRK1-201ENST00000216639 H1FX-AS1Q4G0G2 97 aa8.8□□□□□ -1
VRK1-201ENST00000216639 LPAP08519 4548 aa8.78□□□□□ -1
VRK1-201ENST00000216639 LRP2P98164 4655 aa8.77□□□□□ -1
VRK1-201ENST00000216639 LCA10Q71F78 164 aa8.77□□□□□ -1
VRK1-201ENST00000216639 UQCR11O14957 56 aa8.76□□□□□ -1.01
VRK1-201ENST00000216639 A8MU10 97 aa8.71□□□□□ -1.01
VRK1-201ENST00000216639 HERC1Q15751 4861 aa8.68□□□□□ -1.02
VRK1-201ENST00000216639 MIR22HGQ0VDD5 57 aa8.68□□□□□ -1.02
VRK1-201ENST00000216639 SPATA8Q6RVD6 105 aa8.67□□□□□ -1.02
VRK1-201ENST00000216639 A0A1B0GU33 70 aa8.62□□□□□ -1.03
VRK1-201ENST00000216639 CSAG1Q6PB30 78 aa8.59□□□□□ -1.03
VRK1-201ENST00000216639 KRTAP4-1Q9BYQ7 146 aa8.59□□□□□ -1.03
VRK1-201ENST00000216639 PMAIP1Q13794 54 aa8.55□□□□□ -1.04
VRK1-201ENST00000216639 LORP23490 312 aaPredicted RBP8.54□□□□□ -1.04
VRK1-201ENST00000216639 MUC17Q685J3 4493 aa8.51□□□□□ -1.05
VRK1-201ENST00000216639 KRTAP10-6P60371 365 aaPredicted RBP8.49□□□□□ -1.05
VRK1-201ENST00000216639 H0YAA0 97 aa8.49□□□□□ -1.05
VRK1-201ENST00000216639 ADM2Q7Z4H4 148 aa8.44□□□□□ -1.06
VRK1-201ENST00000216639 A6NN06 94 aa8.43□□□□□ -1.06
VRK1-201ENST00000216639 HMCN2Q8NDA2 5059 aa8.42□□□□□ -1.06
VRK1-201ENST00000216639 P0C880 135 aa8.4□□□□□ -1.07
VRK1-201ENST00000216639 KRTAP19-2Q3LHN2 52 aa8.39□□□□□ -1.07
VRK1-201ENST00000216639 LOC100996750A0A140TA64 210 aa8.38□□□□□ -1.07
VRK1-201ENST00000216639 KRTAP4-6Q9BYQ5 205 aa8.38□□□□□ -1.07
VRK1-201ENST00000216639 K7ERS5 55 aa8.29□□□□□ -1.08
VRK1-201ENST00000216639 KRTAP13-4Q3LI77 160 aa8.29□□□□□ -1.08
VRK1-201ENST00000216639 M0QZ58 72 aa8.26□□□□□ -1.09
VRK1-201ENST00000216639 KTN1-AS1Q86SY8 53 aa8.26□□□□□ -1.09
VRK1-201ENST00000216639 A0A0D9SG42 100 aa8.22□□□□□ -1.09
VRK1-201ENST00000216639 MUC2Q02817 5179 aa8.16□□□□□ -1.1
VRK1-201ENST00000216639 UBR4Q5T4S7 5183 aa8.16□□□□□ -1.1
VRK1-201ENST00000216639 R4GN34 69 aa8.15□□□□□ -1.11
VRK1-201ENST00000216639 FLGP20930 4061 aaPredicted RBP8.06□□□□□ -1.12
VRK1-201ENST00000216639 SPINT4Q6UDR6 99 aa8.03□□□□□ -1.12
VRK1-201ENST00000216639 KRTAP12-1P59990 96 aa8.01□□□□□ -1.13
VRK1-201ENST00000216639 KRTAP12-2P59991 146 aa8□□□□□ -1.13
VRK1-201ENST00000216639 LINC01554Q52M75 96 aa8□□□□□ -1.13
VRK1-201ENST00000216639 RNF213Q63HN8 5207 aa7.99□□□□□ -1.13
VRK1-201ENST00000216639 M0R2T5 61 aa7.98□□□□□ -1.13
VRK1-201ENST00000216639 CRIPTQ9P021 101 aa7.98□□□□□ -1.13
VRK1-201ENST00000216639 MT1HP80294 61 aa7.95□□□□□ -1.14
VRK1-201ENST00000216639 ROMO1P60602 79 aa7.94□□□□□ -1.14
VRK1-201ENST00000216639 PRAC1Q96KF2 57 aa7.94□□□□□ -1.14
VRK1-201ENST00000216639 FAT4Q6V0I7 4981 aa7.8□□□□□ -1.16
VRK1-201ENST00000216639 KRTAP25-1Q3LHN0 102 aa7.72□□□□□ -1.17
VRK1-201ENST00000216639 MT2AP02795 61 aa7.7□□□□□ -1.18
VRK1-201ENST00000216639 KRTAP10-10P60014 251 aa7.69□□□□□ -1.18
VRK1-201ENST00000216639 SPRR2GQ9BYE4 73 aa7.69□□□□□ -1.18
VRK1-201ENST00000216639 CAMK2N1Q7Z7J9 78 aa7.68□□□□□ -1.18
VRK1-201ENST00000216639 KRTAP9-8Q9BYQ0 159 aa7.68□□□□□ -1.18
VRK1-201ENST00000216639 MT1FP04733 61 aa7.66□□□□□ -1.18
VRK1-201ENST00000216639 KRTAP19-1Q8IUB9 90 aa7.62□□□□□ -1.19
VRK1-201ENST00000216639 PLAC4Q8WY50 150 aa7.57□□□□□ -1.2
VRK1-201ENST00000216639 C10orf95Q9H7T3 257 aa7.56□□□□□ -1.2
VRK1-201ENST00000216639 KRTAP4-8Q9BYQ9 185 aa7.51□□□□□ -1.21
VRK1-201ENST00000216639 KRTAP19-8Q3LI54 63 aa7.44□□□□□ -1.22
VRK1-201ENST00000216639 KRTAP9-3Q9BYQ3 159 aa7.4□□□□□ -1.23
VRK1-201ENST00000216639 TNP1P09430 55 aa7.34□□□□□ -1.23
VRK1-201ENST00000216639 KRTAP9-2Q9BYQ4 174 aa7.32□□□□□ -1.24
VRK1-201ENST00000216639 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.31□□□□□ -1.24
VRK1-201ENST00000216639 MT1BP07438 61 aa7.3□□□□□ -1.24
VRK1-201ENST00000216639 PP632Q6XCG6 107 aa7.29□□□□□ -1.24
VRK1-201ENST00000216639 KRTAP9-6A0A140TA67 174 aa7.28□□□□□ -1.24
VRK1-201ENST00000216639 KRTAP23-1A1A580 65 aa7.18□□□□□ -1.26
VRK1-201ENST00000216639 LCE3BQ5TA77 95 aa7.15□□□□□ -1.26
VRK1-201ENST00000216639 KRTAP10-5P60370 271 aa7.13□□□□□ -1.27
VRK1-201ENST00000216639 MT1XP80297 61 aa7.13□□□□□ -1.27
VRK1-201ENST00000216639 PRO2289Q9P1D8 64 aa7.11□□□□□ -1.27
VRK1-201ENST00000216639 KRTAP4-12Q9BQ66 201 aa7.01□□□□□ -1.29
VRK1-201ENST00000216639 KRTAP4-8A0A0G2JLE6 195 aa6.99□□□□□ -1.29
VRK1-201ENST00000216639 KRTAP9-9Q9BYP9 154 aa6.94□□□□□ -1.3
VRK1-201ENST00000216639 KRTAP9-4Q9BYQ2 154 aa6.94□□□□□ -1.3
VRK1-201ENST00000216639 LCE3AQ5TA76 89 aa6.93□□□□□ -1.3
VRK1-201ENST00000216639 KRTAP10-12P60413 245 aa6.9□□□□□ -1.31
VRK1-201ENST00000216639 KRTAP15-1Q3LI76 137 aa6.87□□□□□ -1.31
VRK1-201ENST00000216639 KRTAP10-7P60409 375 aaPredicted RBP6.86□□□□□ -1.31
VRK1-201ENST00000216639 FSIP2Q5CZC0 6907 aa6.82□□□□□ -1.32
VRK1-201ENST00000216639 USH2AO75445 5202 aa6.81□□□□□ -1.32
VRK1-201ENST00000216639 KRTAP8-1Q8IUC2 63 aa6.81□□□□□ -1.32
VRK1-201ENST00000216639 KRTAP4-7Q9BYR0 210 aa6.79□□□□□ -1.32
VRK1-201ENST00000216639 LCE1DQ5T752 114 aa6.7□□□□□ -1.34
VRK1-201ENST00000216639 CRCT1Q9UGL9 99 aa6.69□□□□□ -1.34
VRK1-201ENST00000216639 H3BS24 57 aa6.68□□□□□ -1.34
VRK1-201ENST00000216639 KRTAP12-3P60328 96 aa6.67□□□□□ -1.34
VRK1-201ENST00000216639 KRTAP19-6Q3LI70 58 aa6.67□□□□□ -1.34
VRK1-201ENST00000216639 SSPOA2VEC9 5147 aa6.58□□□□□ -1.36
VRK1-201ENST00000216639 KRTAP4-9Q9BYQ8 210 aa6.54□□□□□ -1.36
VRK1-201ENST00000216639 KRTAP19-5Q3LI72 72 aa6.52□□□□□ -1.37
VRK1-201ENST00000216639 LUZP6Q538Z0 58 aa6.5□□□□□ -1.37
VRK1-201ENST00000216639 SPRR5A0A1B0GTR4 108 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms