RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 CHD6Q8TD26 2715 aa2.1□□□□□ -2.07
COPS3-216ENST00000579716 CRYBG3Q68DQ2 2970 aa2.1□□□□□ -2.07
COPS3-216ENST00000579716 VPS13DQ5THJ4 4388 aa2.09□□□□□ -2.07
COPS3-216ENST00000579716 A0A096LPF7 62 aa2.09□□□□□ -2.07
COPS3-216ENST00000579716 H3BNG1 76 aa2.09□□□□□ -2.07
COPS3-216ENST00000579716 CELSR1Q9NYQ6 3014 aa2.09□□□□□ -2.08
COPS3-216ENST00000579716 MAP1BP46821 2468 aaKnown RBP2.08□□□□□ -2.08
COPS3-216ENST00000579716 LINC01556Q5JQF7 62 aa2.08□□□□□ -2.08
COPS3-216ENST00000579716 NBASA2RRP1 2371 aa2.07□□□□□ -2.08
COPS3-216ENST00000579716 WDR87Q6ZQQ6 2873 aa2.07□□□□□ -2.08
COPS3-216ENST00000579716 CREBBPQ92793 2442 aa2.07□□□□□ -2.08
COPS3-216ENST00000579716 CHD9Q3L8U1 2897 aa2.06□□□□□ -2.08
COPS3-216ENST00000579716 KRTAP2-3P0C7H8 128 aa2.06□□□□□ -2.08
COPS3-216ENST00000579716 KRTAP2-4Q9BYR9 128 aa2.06□□□□□ -2.08
COPS3-216ENST00000579716 KRTAP2-1Q9BYU5 128 aa2.06□□□□□ -2.08
COPS3-216ENST00000579716 DNAH11Q96DT5 4516 aa2.05□□□□□ -2.08
COPS3-216ENST00000579716 COL6A3P12111 3177 aa2.04□□□□□ -2.08
COPS3-216ENST00000579716 TENM4Q6N022 2769 aa2.04□□□□□ -2.08
COPS3-216ENST00000579716 TNRC18O15417 2968 aaPredicted RBP2.03□□□□□ -2.08
COPS3-216ENST00000579716 ATRQ13535 2644 aa2.02□□□□□ -2.09
COPS3-216ENST00000579716 CSMD3Q7Z407 3707 aa2□□□□□ -2.09
COPS3-216ENST00000579716 MYCBP2O75592 4640 aa1.98□□□□□ -2.09
COPS3-216ENST00000579716 DEFB133Q30KQ1 61 aa1.97□□□□□ -2.09
COPS3-216ENST00000579716 SMR3AQ99954 134 aa1.97□□□□□ -2.09
COPS3-216ENST00000579716 RPS29P62273 56 aaKnown RBP1.96□□□□□ -2.1
COPS3-216ENST00000579716 NCOR2Q9Y618 2525 aa1.96□□□□□ -2.1
COPS3-216ENST00000579716 NBPF19A0A087WUL8 3843 aa1.95□□□□□ -2.1
COPS3-216ENST00000579716 PIEZO1Q92508 2521 aa1.94□□□□□ -2.1
COPS3-216ENST00000579716 USP9YO00507 2555 aaPredicted RBP1.93□□□□□ -2.1
COPS3-216ENST00000579716 BDP1A6H8Y1 2624 aa1.92□□□□□ -2.1
COPS3-216ENST00000579716 PTPN13Q12923 2485 aa1.92□□□□□ -2.1
COPS3-216ENST00000579716 UBR4Q5T4S7 5183 aa1.92□□□□□ -2.1
COPS3-216ENST00000579716 AKAP9Q99996 3911 aa1.92□□□□□ -2.1
COPS3-216ENST00000579716 FAM186AA6NE01 2351 aa1.91□□□□□ -2.1
COPS3-216ENST00000579716 CD52P31358 61 aa1.91□□□□□ -2.1
COPS3-216ENST00000579716 EPG5Q9HCE0 2579 aa1.91□□□□□ -2.1
COPS3-216ENST00000579716 ZFHX4Q86UP3 3567 aa1.9□□□□□ -2.11
COPS3-216ENST00000579716 KRTAP8-1Q8IUC2 63 aa1.9□□□□□ -2.11
COPS3-216ENST00000579716 KRTAP4-1Q9BYQ7 146 aa1.9□□□□□ -2.11
COPS3-216ENST00000579716 LRRK2Q5S007 2527 aa1.9□□□□□ -2.11
COPS3-216ENST00000579716 ITPR3Q14573 2671 aa1.9□□□□□ -2.11
COPS3-216ENST00000579716 FRYLO94915 3013 aa1.89□□□□□ -2.11
COPS3-216ENST00000579716 SACSQ9NZJ4 4579 aa1.89□□□□□ -2.11
COPS3-216ENST00000579716 RANBP2P49792 3224 aaKnown RBP1.89□□□□□ -2.11
COPS3-216ENST00000579716 FRYQ5TBA9 3013 aa1.88□□□□□ -2.11
COPS3-216ENST00000579716 RIF1Q5UIP0 2472 aaKnown RBP1.88□□□□□ -2.11
COPS3-216ENST00000579716 CHD8Q9HCK8 2581 aa1.87□□□□□ -2.11
COPS3-216ENST00000579716 CRCT1Q9UGL9 99 aa1.87□□□□□ -2.11
COPS3-216ENST00000579716 U3KQA8 63 aa1.87□□□□□ -2.11
COPS3-216ENST00000579716 PDZD2O15018 2839 aa1.87□□□□□ -2.11
COPS3-216ENST00000579716 CEP350Q5VT06 3117 aa1.86□□□□□ -2.11
COPS3-216ENST00000579716 VPS13BQ7Z7G8 4022 aa1.85□□□□□ -2.11
COPS3-216ENST00000579716 HIVEP3Q5T1R4 2406 aa1.85□□□□□ -2.11
COPS3-216ENST00000579716 GCN1Q92616 2671 aaKnown RBP1.84□□□□□ -2.11
COPS3-216ENST00000579716 KMT2AQ03164 3969 aa1.84□□□□□ -2.12
COPS3-216ENST00000579716 CFAP54Q96N23 3096 aa1.83□□□□□ -2.12
COPS3-216ENST00000579716 APCP25054 2843 aa1.83□□□□□ -2.12
COPS3-216ENST00000579716 NOTCH1P46531 2555 aa1.83□□□□□ -2.12
COPS3-216ENST00000579716 LYSTQ99698 3801 aa1.83□□□□□ -2.12
COPS3-216ENST00000579716 HELZ2Q9BYK8 2649 aaKnown RBP1.83□□□□□ -2.12
COPS3-216ENST00000579716 DNAH8Q96JB1 4490 aa1.82□□□□□ -2.12
COPS3-216ENST00000579716 FLNCQ14315 2725 aa1.82□□□□□ -2.12
COPS3-216ENST00000579716 COL7A1Q02388 2944 aa1.82□□□□□ -2.12
COPS3-216ENST00000579716 ITPR1Q14643 2758 aa1.81□□□□□ -2.12
COPS3-216ENST00000579716 NF1P21359 2839 aa1.81□□□□□ -2.12
COPS3-216ENST00000579716 PRM1P04553 51 aa1.81□□□□□ -2.12
COPS3-216ENST00000579716 MTORP42345 2549 aa1.81□□□□□ -2.12
COPS3-216ENST00000579716 NBEAQ8NFP9 2946 aa1.8□□□□□ -2.12
COPS3-216ENST00000579716 TNXBP22105 4242 aa1.8□□□□□ -2.12
COPS3-216ENST00000579716 MAP1AP78559 2803 aaPredicted RBP1.8□□□□□ -2.12
COPS3-216ENST00000579716 DCHS2Q6V1P9 2916 aa1.8□□□□□ -2.12
COPS3-216ENST00000579716 HTN3P15516 51 aa1.8□□□□□ -2.12
COPS3-216ENST00000579716 RELNP78509 3460 aa1.79□□□□□ -2.12
COPS3-216ENST00000579716 BSNQ9UPA5 3926 aa1.79□□□□□ -2.12
COPS3-216ENST00000579716 ANKHD1Q8IWZ3 2542 aaKnown RBP1.79□□□□□ -2.12
COPS3-216ENST00000579716 PRKDCP78527 4128 aaKnown RBP1.78□□□□□ -2.12
COPS3-216ENST00000579716 TEP1Q99973 2627 aaKnown RBP1.78□□□□□ -2.12
COPS3-216ENST00000579716 PRUNE2Q8WUY3 3088 aa1.77□□□□□ -2.13
COPS3-216ENST00000579716 COL12A1Q99715 3063 aa1.77□□□□□ -2.13
COPS3-216ENST00000579716 ZNF469Q96JG9 3925 aaPredicted RBP1.77□□□□□ -2.13
COPS3-216ENST00000579716 DYNC2H1Q8NCM8 4307 aaKnown RBP1.77□□□□□ -2.13
COPS3-216ENST00000579716 ANK2Q01484 3957 aa1.76□□□□□ -2.13
COPS3-216ENST00000579716 SETXQ7Z333 2677 aaKnown RBP1.76□□□□□ -2.13
COPS3-216ENST00000579716 TRIOO75962 3097 aa1.76□□□□□ -2.13
COPS3-216ENST00000579716 STAB1Q9NY15 2570 aa1.76□□□□□ -2.13
COPS3-216ENST00000579716 FBN2P35556 2912 aa1.76□□□□□ -2.13
COPS3-216ENST00000579716 UTP20O75691 2785 aaKnown RBP1.76□□□□□ -2.13
COPS3-216ENST00000579716 NIPBLQ6KC79 2804 aaeCLIP1.75□□□□□ -2.13
COPS3-216ENST00000579716 SONP18583 2426 aaKnown RBP1.75□□□□□ -2.13
COPS3-216ENST00000579716 HMCN1Q96RW7 5635 aa1.75□□□□□ -2.13
COPS3-216ENST00000579716 NSD1Q96L73 2696 aaPredicted RBP1.74□□□□□ -2.13
COPS3-216ENST00000579716 SPENQ96T58 3664 aaKnown RBP1.73□□□□□ -2.13
COPS3-216ENST00000579716 DNAH3Q8TD57 4116 aa1.73□□□□□ -2.13
COPS3-216ENST00000579716 AHNAKQ09666 5890 aaKnown RBP1.73□□□□□ -2.13
COPS3-216ENST00000579716 BOD1L1Q8NFC6 3051 aa1.72□□□□□ -2.13
COPS3-216ENST00000579716 C5orf42Q9H799 3197 aa1.72□□□□□ -2.13
COPS3-216ENST00000579716 HTTP42858 3142 aa1.72□□□□□ -2.13
COPS3-216ENST00000579716 SZT2Q5T011 3432 aa1.72□□□□□ -2.13
COPS3-216ENST00000579716 SPG11Q96JI7 2443 aa1.72□□□□□ -2.13
COPS3-216ENST00000579716 ATMQ13315 3056 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms