RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 APCP25054 2843 aa9.05□□□□□ -0.96
PCDHA3-201ENST00000522353 VCANP13611 3396 aa9.04□□□□□ -0.96
PCDHA3-201ENST00000522353 KALRNO60229 2985 aa9.02□□□□□ -0.97
PCDHA3-201ENST00000522353 ADGRG4Q8IZF6 3080 aa9.02□□□□□ -0.97
PCDHA3-201ENST00000522353 CRYBG3Q68DQ2 2970 aa9.01□□□□□ -0.97
PCDHA3-201ENST00000522353 LRBAP50851 2863 aa9□□□□□ -0.97
PCDHA3-201ENST00000522353 BOD1L1Q8NFC6 3051 aa8.99□□□□□ -0.97
PCDHA3-201ENST00000522353 DNAH14Q0VDD8 3507 aa8.97□□□□□ -0.97
PCDHA3-201ENST00000522353 H3BS24 57 aa8.97□□□□□ -0.97
PCDHA3-201ENST00000522353 A6NN06 94 aa8.96□□□□□ -0.97
PCDHA3-201ENST00000522353 CELSR2Q9HCU4 2923 aa8.96□□□□□ -0.97
PCDHA3-201ENST00000522353 ASH1LQ9NR48 2969 aaKnown RBP8.94□□□□□ -0.98
PCDHA3-201ENST00000522353 TENM3Q9P273 2699 aa8.93□□□□□ -0.98
PCDHA3-201ENST00000522353 ZZEF1O43149 2961 aa8.91□□□□□ -0.98
PCDHA3-201ENST00000522353 A8MU10 97 aa8.9□□□□□ -0.98
PCDHA3-201ENST00000522353 FREM2Q5SZK8 3169 aa8.9□□□□□ -0.98
PCDHA3-201ENST00000522353 COL6A3P12111 3177 aa8.89□□□□□ -0.99
PCDHA3-201ENST00000522353 DCHS2Q6V1P9 2916 aa8.87□□□□□ -0.99
PCDHA3-201ENST00000522353 TNRC18O15417 2968 aaPredicted RBP8.86□□□□□ -0.99
PCDHA3-201ENST00000522353 KRTAP25-1Q3LHN0 102 aa8.84□□□□□ -0.99
PCDHA3-201ENST00000522353 KRTAP1-4P0C5Y4 121 aa8.82□□□□□ -1
PCDHA3-201ENST00000522353 EYSQ5T1H1 3165 aa8.8□□□□□ -1
PCDHA3-201ENST00000522353 TENM1Q9UKZ4 2725 aa8.79□□□□□ -1
PCDHA3-201ENST00000522353 TNP1P09430 55 aa8.79□□□□□ -1
PCDHA3-201ENST00000522353 XP32Q5T750 250 aa8.79□□□□□ -1
PCDHA3-201ENST00000522353 ZANQ9Y493 2812 aa8.77□□□□□ -1.01
PCDHA3-201ENST00000522353 TPRXLQ17RH7 258 aa8.74□□□□□ -1.01
PCDHA3-201ENST00000522353 DMXL1Q9Y485 3027 aa8.71□□□□□ -1.02
PCDHA3-201ENST00000522353 NF1P21359 2839 aa8.7□□□□□ -1.02
PCDHA3-201ENST00000522353 TENM2Q9NT68 2774 aa8.65□□□□□ -1.02
PCDHA3-201ENST00000522353 CFAP47Q6ZTR5 3102 aa8.62□□□□□ -1.03
PCDHA3-201ENST00000522353 HRNRQ86YZ3 2850 aaPredicted RBP8.61□□□□□ -1.03
PCDHA3-201ENST00000522353 KRTAP16-1A8MUX0 517 aa8.59□□□□□ -1.03
PCDHA3-201ENST00000522353 KRTAP10-8P60410 259 aa8.59□□□□□ -1.03
PCDHA3-201ENST00000522353 SPTBN5Q9NRC6 3674 aaKnown RBP8.59□□□□□ -1.03
PCDHA3-201ENST00000522353 A0A1B0GVY2 172 aa8.57□□□□□ -1.04
PCDHA3-201ENST00000522353 USP34Q70CQ2 3546 aa8.57□□□□□ -1.04
PCDHA3-201ENST00000522353 KRTAP10-10P60014 251 aa8.52□□□□□ -1.05
PCDHA3-201ENST00000522353 KRTAP13-3Q3SY46 172 aa8.52□□□□□ -1.05
PCDHA3-201ENST00000522353 PP632Q6XCG6 107 aa8.52□□□□□ -1.05
PCDHA3-201ENST00000522353 SPEGQ15772 3267 aa8.51□□□□□ -1.05
PCDHA3-201ENST00000522353 LOC400499M0QZD8 3231 aa8.49□□□□□ -1.05
PCDHA3-201ENST00000522353 MXRA5Q9NR99 2828 aa8.48□□□□□ -1.05
PCDHA3-201ENST00000522353 NDUFAF8A1L188 74 aa8.47□□□□□ -1.05
PCDHA3-201ENST00000522353 FBN2P35556 2912 aa8.47□□□□□ -1.05
PCDHA3-201ENST00000522353 PKD1L1Q8TDX9 2849 aa8.46□□□□□ -1.06
PCDHA3-201ENST00000522353 PRO2289Q9P1D8 64 aa8.45□□□□□ -1.06
PCDHA3-201ENST00000522353 C10orf95Q9H7T3 257 aa8.44□□□□□ -1.06
PCDHA3-201ENST00000522353 H0YAA0 97 aa8.33□□□□□ -1.08
PCDHA3-201ENST00000522353 CELSR1Q9NYQ6 3014 aa8.32□□□□□ -1.08
PCDHA3-201ENST00000522353 PDZD2O15018 2839 aa8.25□□□□□ -1.09
PCDHA3-201ENST00000522353 VWFP04275 2813 aa8.24□□□□□ -1.09
PCDHA3-201ENST00000522353 TGP01266 2768 aa8.23□□□□□ -1.09
PCDHA3-201ENST00000522353 P0C880 135 aa8.21□□□□□ -1.09
PCDHA3-201ENST00000522353 MYO15AQ9UKN7 3530 aa8.2□□□□□ -1.1
PCDHA3-201ENST00000522353 DCHS1Q96JQ0 3298 aa8.11□□□□□ -1.11
PCDHA3-201ENST00000522353 RELNP78509 3460 aa8.09□□□□□ -1.12
PCDHA3-201ENST00000522353 SRRM2Q9UQ35 2752 aaKnown RBP8.04□□□□□ -1.12
PCDHA3-201ENST00000522353 WDFY3Q8IZQ1 3526 aa7.94□□□□□ -1.14
PCDHA3-201ENST00000522353 FBN1P35555 2871 aaKnown RBP7.9□□□□□ -1.14
PCDHA3-201ENST00000522353 OTOGQ6ZRI0 2925 aa7.87□□□□□ -1.15
PCDHA3-201ENST00000522353 FBN3Q75N90 2809 aa7.85□□□□□ -1.15
PCDHA3-201ENST00000522353 LAMA5O15230 3695 aa7.85□□□□□ -1.15
PCDHA3-201ENST00000522353 KRTAP12-2P59991 146 aa7.83□□□□□ -1.16
PCDHA3-201ENST00000522353 ZFHX4Q86UP3 3567 aa7.82□□□□□ -1.16
PCDHA3-201ENST00000522353 KRTAP13-4Q3LI77 160 aa7.81□□□□□ -1.16
PCDHA3-201ENST00000522353 MUC3AQ02505 3323 aa7.75□□□□□ -1.17
PCDHA3-201ENST00000522353 KRTAP12-1P59990 96 aa7.74□□□□□ -1.17
PCDHA3-201ENST00000522353 ASPMQ8IZT6 3477 aa7.74□□□□□ -1.17
PCDHA3-201ENST00000522353 CSMD1Q96PZ7 3565 aa7.74□□□□□ -1.17
PCDHA3-201ENST00000522353 KRTAP3-1Q9BYR8 98 aa7.71□□□□□ -1.18
PCDHA3-201ENST00000522353 NBPF19A0A087WUL8 3843 aa7.69□□□□□ -1.18
PCDHA3-201ENST00000522353 MT1HL1P0DM35 61 aa7.67□□□□□ -1.18
PCDHA3-201ENST00000522353 SMG1Q96Q15 3661 aaKnown RBP7.67□□□□□ -1.18
PCDHA3-201ENST00000522353 DMDP11532 3685 aa7.65□□□□□ -1.18
PCDHA3-201ENST00000522353 ZFHX3Q15911 3703 aa7.65□□□□□ -1.19
PCDHA3-201ENST00000522353 COL7A1Q02388 2944 aa7.58□□□□□ -1.2
PCDHA3-201ENST00000522353 MEGF8Q7Z7M0 2845 aa7.55□□□□□ -1.2
PCDHA3-201ENST00000522353 KRTAP10-6P60371 365 aaPredicted RBP7.51□□□□□ -1.21
PCDHA3-201ENST00000522353 KRTAP15-1Q3LI76 137 aa7.5□□□□□ -1.21
PCDHA3-201ENST00000522353 ANK3Q12955 4377 aaKnown RBP7.5□□□□□ -1.21
PCDHA3-201ENST00000522353 SVEP1Q4LDE5 3571 aa7.42□□□□□ -1.22
PCDHA3-201ENST00000522353 KRTAP4-5Q9BYR2 181 aa7.41□□□□□ -1.22
PCDHA3-201ENST00000522353 KRTAP10-4P60372 401 aaPredicted RBP7.39□□□□□ -1.23
PCDHA3-201ENST00000522353 CSMD2Q7Z408 3487 aa7.37□□□□□ -1.23
PCDHA3-201ENST00000522353 TRRAPQ9Y4A5 3859 aa7.29□□□□□ -1.24
PCDHA3-201ENST00000522353 SPENQ96T58 3664 aaKnown RBP7.29□□□□□ -1.24
PCDHA3-201ENST00000522353 KRTAP10-12P60413 245 aa7.27□□□□□ -1.25
PCDHA3-201ENST00000522353 BSNQ9UPA5 3926 aa7.26□□□□□ -1.25
PCDHA3-201ENST00000522353 KRTAP3-2Q9BYR7 98 aa7.23□□□□□ -1.25
PCDHA3-201ENST00000522353 KRTAP3-3Q9BYR6 98 aa7.22□□□□□ -1.25
PCDHA3-201ENST00000522353 CUBNO60494 3623 aa7.19□□□□□ -1.26
PCDHA3-201ENST00000522353 CRCT1Q9UGL9 99 aa7.06□□□□□ -1.28
PCDHA3-201ENST00000522353 KRTAP12-3P60328 96 aa7.02□□□□□ -1.29
PCDHA3-201ENST00000522353 INE1O15225 51 aa7.01□□□□□ -1.29
PCDHA3-201ENST00000522353 HUWE1Q7Z6Z7 4374 aaKnown RBP7.01□□□□□ -1.29
PCDHA3-201ENST00000522353 KRTAP23-1A1A580 65 aa6.99□□□□□ -1.29
PCDHA3-201ENST00000522353 VPS13CQ709C8 3753 aa6.92□□□□□ -1.3
PCDHA3-201ENST00000522353 ALMS1Q8TCU4 4167 aa6.9□□□□□ -1.3
PCDHA3-201ENST00000522353 KRTAP8-1Q8IUC2 63 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms