RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 C5orf42Q9H799 3197 aa2.17□□□□□ -2.06
VCAN-209ENST00000513016 DNAH14Q0VDD8 3507 aa2.17□□□□□ -2.06
VCAN-209ENST00000513016 USP34Q70CQ2 3546 aa2.17□□□□□ -2.06
VCAN-209ENST00000513016 FRYLO94915 3013 aa2.16□□□□□ -2.06
VCAN-209ENST00000513016 SPEGQ15772 3267 aa2.16□□□□□ -2.06
VCAN-209ENST00000513016 AKAP13Q12802 2813 aa2.16□□□□□ -2.06
VCAN-209ENST00000513016 TENM4Q6N022 2769 aa2.15□□□□□ -2.06
VCAN-209ENST00000513016 HIVEP1P15822 2718 aa2.15□□□□□ -2.07
VCAN-209ENST00000513016 CENPEQ02224 2701 aa2.14□□□□□ -2.07
VCAN-209ENST00000513016 UBR5O95071 2799 aaPredicted RBP2.14□□□□□ -2.07
VCAN-209ENST00000513016 PRRC2CQ9Y520 2896 aaKnown RBP2.13□□□□□ -2.07
VCAN-209ENST00000513016 TNRC18O15417 2968 aaPredicted RBP2.13□□□□□ -2.07
VCAN-209ENST00000513016 MGAQ8IWI9 3026 aa2.13□□□□□ -2.07
VCAN-209ENST00000513016 TRANK1O15050 2925 aa2.11□□□□□ -2.07
VCAN-209ENST00000513016 LAMA1P25391 3075 aa2.11□□□□□ -2.07
VCAN-209ENST00000513016 H0YAA0 97 aa2.1□□□□□ -2.07
VCAN-209ENST00000513016 CFAP54Q96N23 3096 aa2.1□□□□□ -2.07
VCAN-209ENST00000513016 MYO15AQ9UKN7 3530 aa2.1□□□□□ -2.07
VCAN-209ENST00000513016 P0C880 135 aa2.09□□□□□ -2.08
VCAN-209ENST00000513016 FREM2Q5SZK8 3169 aa2.08□□□□□ -2.08
VCAN-209ENST00000513016 LOC400499M0QZD8 3231 aa2.08□□□□□ -2.08
VCAN-209ENST00000513016 DSPP15924 2871 aaKnown RBP2.07□□□□□ -2.08
VCAN-209ENST00000513016 WDFY3Q8IZQ1 3526 aa2.07□□□□□ -2.08
VCAN-209ENST00000513016 ITPR1Q14643 2758 aa2.07□□□□□ -2.08
VCAN-209ENST00000513016 CELSR3Q9NYQ7 3312 aa2.06□□□□□ -2.08
VCAN-209ENST00000513016 DCHS1Q96JQ0 3298 aa2.06□□□□□ -2.08
VCAN-209ENST00000513016 NBEAL2Q6ZNJ1 2754 aa2.06□□□□□ -2.08
VCAN-209ENST00000513016 SPTBN5Q9NRC6 3674 aaKnown RBP2.06□□□□□ -2.08
VCAN-209ENST00000513016 FRYQ5TBA9 3013 aa2.06□□□□□ -2.08
VCAN-209ENST00000513016 ASPMQ8IZT6 3477 aa2.05□□□□□ -2.08
VCAN-209ENST00000513016 DMDP11532 3685 aa2.04□□□□□ -2.08
VCAN-209ENST00000513016 KRTAP13-4Q3LI77 160 aa2.03□□□□□ -2.08
VCAN-209ENST00000513016 CFAP47Q6ZTR5 3102 aa2.03□□□□□ -2.08
VCAN-209ENST00000513016 APCP25054 2843 aa2.03□□□□□ -2.08
VCAN-209ENST00000513016 HYDINQ4G0P3 5121 aa2.03□□□□□ -2.08
VCAN-209ENST00000513016 COL12A1Q99715 3063 aa2.03□□□□□ -2.08
VCAN-209ENST00000513016 TENM2Q9NT68 2774 aa2.03□□□□□ -2.08
VCAN-209ENST00000513016 MT1HL1P0DM35 61 aa2.02□□□□□ -2.09
VCAN-209ENST00000513016 UTP20O75691 2785 aaKnown RBP2.02□□□□□ -2.09
VCAN-209ENST00000513016 DMXL1Q9Y485 3027 aa2.02□□□□□ -2.09
VCAN-209ENST00000513016 NIPBLQ6KC79 2804 aaeCLIP2.01□□□□□ -2.09
VCAN-209ENST00000513016 ZFHX4Q86UP3 3567 aa1.99□□□□□ -2.09
VCAN-209ENST00000513016 FLNCQ14315 2725 aa1.99□□□□□ -2.09
VCAN-209ENST00000513016 BOD1L1Q8NFC6 3051 aa1.99□□□□□ -2.09
VCAN-209ENST00000513016 CRYBG3Q68DQ2 2970 aa1.99□□□□□ -2.09
VCAN-209ENST00000513016 KRTAP15-1Q3LI76 137 aa1.98□□□□□ -2.09
VCAN-209ENST00000513016 ZZEF1O43149 2961 aa1.98□□□□□ -2.09
VCAN-209ENST00000513016 ATMQ13315 3056 aa1.98□□□□□ -2.09
VCAN-209ENST00000513016 LRBAP50851 2863 aa1.97□□□□□ -2.09
VCAN-209ENST00000513016 LAMA5O15230 3695 aa1.97□□□□□ -2.09
VCAN-209ENST00000513016 KRTAP12-2P59991 146 aa1.97□□□□□ -2.09
VCAN-209ENST00000513016 TACC2O95359 2948 aa1.97□□□□□ -2.09
VCAN-209ENST00000513016 KRTAP12-1P59990 96 aa1.97□□□□□ -2.09
VCAN-209ENST00000513016 DMXL2Q8TDJ6 3036 aa1.95□□□□□ -2.1
VCAN-209ENST00000513016 TENM1Q9UKZ4 2725 aa1.94□□□□□ -2.1
VCAN-209ENST00000513016 KRTAP4-5Q9BYR2 181 aa1.94□□□□□ -2.1
VCAN-209ENST00000513016 KRTAP3-1Q9BYR8 98 aa1.94□□□□□ -2.1
VCAN-209ENST00000513016 TENM3Q9P273 2699 aa1.92□□□□□ -2.1
VCAN-209ENST00000513016 KRTAP10-12P60413 245 aa1.92□□□□□ -2.1
VCAN-209ENST00000513016 KRTAP10-4P60372 401 aaPredicted RBP1.92□□□□□ -2.1
VCAN-209ENST00000513016 NBEAQ8NFP9 2946 aa1.91□□□□□ -2.1
VCAN-209ENST00000513016 SMG1Q96Q15 3661 aaKnown RBP1.91□□□□□ -2.1
VCAN-209ENST00000513016 UBR4Q5T4S7 5183 aa1.9□□□□□ -2.1
VCAN-209ENST00000513016 DCHS2Q6V1P9 2916 aa1.89□□□□□ -2.11
VCAN-209ENST00000513016 INE1O15225 51 aa1.88□□□□□ -2.11
VCAN-209ENST00000513016 ASH1LQ9NR48 2969 aaKnown RBP1.88□□□□□ -2.11
VCAN-209ENST00000513016 CELSR2Q9HCU4 2923 aa1.88□□□□□ -2.11
VCAN-209ENST00000513016 KRTAP10-6P60371 365 aaPredicted RBP1.88□□□□□ -2.11
VCAN-209ENST00000513016 RELNP78509 3460 aa1.87□□□□□ -2.11
VCAN-209ENST00000513016 KALRNO60229 2985 aa1.87□□□□□ -2.11
VCAN-209ENST00000513016 KRTAP8-1Q8IUC2 63 aa1.86□□□□□ -2.11
VCAN-209ENST00000513016 NF1P21359 2839 aa1.86□□□□□ -2.11
VCAN-209ENST00000513016 KRTAP23-1A1A580 65 aa1.86□□□□□ -2.11
VCAN-209ENST00000513016 ADGRG4Q8IZF6 3080 aa1.85□□□□□ -2.11
VCAN-209ENST00000513016 PDZD2O15018 2839 aa1.85□□□□□ -2.11
VCAN-209ENST00000513016 HUWE1Q7Z6Z7 4374 aaKnown RBP1.85□□□□□ -2.11
VCAN-209ENST00000513016 CRCT1Q9UGL9 99 aa1.85□□□□□ -2.11
VCAN-209ENST00000513016 FBN3Q75N90 2809 aa1.85□□□□□ -2.11
VCAN-209ENST00000513016 KRTAP12-3P60328 96 aa1.84□□□□□ -2.12
VCAN-209ENST00000513016 MXRA5Q9NR99 2828 aa1.83□□□□□ -2.12
VCAN-209ENST00000513016 CSMD2Q7Z408 3487 aa1.82□□□□□ -2.12
VCAN-209ENST00000513016 ALMS1Q8TCU4 4167 aa1.82□□□□□ -2.12
VCAN-209ENST00000513016 CELSR1Q9NYQ6 3014 aa1.82□□□□□ -2.12
VCAN-209ENST00000513016 KRTAP3-3Q9BYR6 98 aa1.81□□□□□ -2.12
VCAN-209ENST00000513016 TGP01266 2768 aa1.81□□□□□ -2.12
VCAN-209ENST00000513016 KRTAP3-2Q9BYR7 98 aa1.81□□□□□ -2.12
VCAN-209ENST00000513016 RYR2Q92736 4967 aa1.81□□□□□ -2.12
VCAN-209ENST00000513016 LORP23490 312 aaPredicted RBP1.81□□□□□ -2.12
VCAN-209ENST00000513016 ANK3Q12955 4377 aaKnown RBP1.81□□□□□ -2.12
VCAN-209ENST00000513016 FBN2P35556 2912 aa1.81□□□□□ -2.12
VCAN-209ENST00000513016 ZFHX3Q15911 3703 aa1.8□□□□□ -2.12
VCAN-209ENST00000513016 HRNRQ86YZ3 2850 aaPredicted RBP1.79□□□□□ -2.12
VCAN-209ENST00000513016 ZANQ9Y493 2812 aa1.79□□□□□ -2.12
VCAN-209ENST00000513016 CSMD1Q96PZ7 3565 aa1.79□□□□□ -2.12
VCAN-209ENST00000513016 PKD1L1Q8TDX9 2849 aa1.78□□□□□ -2.12
VCAN-209ENST00000513016 MT1HP80294 61 aa1.78□□□□□ -2.12
VCAN-209ENST00000513016 SPENQ96T58 3664 aaKnown RBP1.77□□□□□ -2.13
VCAN-209ENST00000513016 LCE3AQ5TA76 89 aa1.77□□□□□ -2.13
VCAN-209ENST00000513016 OTOGQ6ZRI0 2925 aa1.76□□□□□ -2.13
VCAN-209ENST00000513016 CUBNO60494 3623 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 213.4 ms