RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 DCAF8L2P0C7V8 631 aa7.56□□□□□ -1.2
VCAN-209ENST00000513016 NISCHQ9Y2I1 1504 aa7.07□□□□□ -1.28
VCAN-209ENST00000513016 FAM9AQ8IZU1 332 aaPredicted RBP7.02□□□□□ -1.29
VCAN-209ENST00000513016 SUPT5HO00267 1087 aaKnown RBP6.88□□□□□ -1.31
VCAN-209ENST00000513016 APLP2Q06481 763 aa6.8□□□□□ -1.32
VCAN-209ENST00000513016 SHROOM4Q9ULL8 1493 aa6.75□□□□□ -1.33
VCAN-209ENST00000513016 EHMT2Q96KQ7 1210 aa6.6□□□□□ -1.35
VCAN-209ENST00000513016 ATP1B4Q9UN42 357 aaPredicted RBP6.55□□□□□ -1.36
VCAN-209ENST00000513016 PELP1Q8IZL8 1130 aaKnown RBP6.54□□□□□ -1.36
VCAN-209ENST00000513016 TRIM41Q8WV44 630 aa6.48□□□□□ -1.37
VCAN-209ENST00000513016 MYT1LQ9UL68 1186 aa6.48□□□□□ -1.37
VCAN-209ENST00000513016 RANGAP1P46060 587 aaPredicted RBP6.46□□□□□ -1.38
VCAN-209ENST00000513016 UBTFP17480 764 aaKnown RBP6.45□□□□□ -1.38
VCAN-209ENST00000513016 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.41□□□□□ -1.38
VCAN-209ENST00000513016 HNRNPUL2Q1KMD3 747 aaKnown RBP6.41□□□□□ -1.38
VCAN-209ENST00000513016 TTBK1Q5TCY1 1321 aaPredicted RBP6.36□□□□□ -1.39
VCAN-209ENST00000513016 ABCC9O60706 1549 aa6.32□□□□□ -1.4
VCAN-209ENST00000513016 ZEB1P37275 1124 aaPredicted RBP6.29□□□□□ -1.4
VCAN-209ENST00000513016 CCER1Q8TC90 406 aaPredicted RBP6.28□□□□□ -1.4
VCAN-209ENST00000513016 PCGF6Q9BYE7 350 aa6.27□□□□□ -1.41
VCAN-209ENST00000513016 PABPN1Q86U42 306 aaKnown RBP eCLIP6.27□□□□□ -1.41
VCAN-209ENST00000513016 FBLN2P98095 1184 aa6.21□□□□□ -1.42
VCAN-209ENST00000513016 CHIC1Q5VXU3 224 aa6.19□□□□□ -1.42
VCAN-209ENST00000513016 NEFLP07196 543 aa6.18□□□□□ -1.42
VCAN-209ENST00000513016 NPM1P06748 294 aaKnown RBP eCLIP6.18□□□□□ -1.42
VCAN-209ENST00000513016 CENPBP07199 599 aaPredicted RBP6.18□□□□□ -1.42
VCAN-209ENST00000513016 ERICH6Q7L0X2 663 aa6.18□□□□□ -1.42
VCAN-209ENST00000513016 SLC4A1APQ9BWU0 796 aaKnown RBP6.17□□□□□ -1.42
VCAN-209ENST00000513016 ESF1Q9H501 851 aaKnown RBP6.16□□□□□ -1.42
VCAN-209ENST00000513016 ITGAEP38570 1179 aa6.15□□□□□ -1.42
VCAN-209ENST00000513016 POLR3GLQ9BT43 218 aa6.15□□□□□ -1.43
VCAN-209ENST00000513016 BCANQ96GW7 911 aa6.11□□□□□ -1.43
VCAN-209ENST00000513016 CDK11AQ9UQ88 783 aaPredicted RBP6.11□□□□□ -1.43
VCAN-209ENST00000513016 TRIM52Q96A61 297 aa6.09□□□□□ -1.43
VCAN-209ENST00000513016 FAM50AQ14320 339 aaKnown RBP6.08□□□□□ -1.44
VCAN-209ENST00000513016 DAXXQ9UER7 740 aaPredicted RBP6.04□□□□□ -1.44
VCAN-209ENST00000513016 NEFMP07197 916 aa6.04□□□□□ -1.44
VCAN-209ENST00000513016 TRIM26Q12899 539 aaPredicted RBP6.04□□□□□ -1.44
VCAN-209ENST00000513016 STAG3Q9UJ98 1225 aa6.03□□□□□ -1.44
VCAN-209ENST00000513016 PPARGC1BQ86YN6 1023 aaKnown RBP6.03□□□□□ -1.44
VCAN-209ENST00000513016 ZBTB47Q9UFB7 747 aaPredicted RBP6□□□□□ -1.45
VCAN-209ENST00000513016 CHMP7Q8WUX9 453 aaPredicted RBP5.98□□□□□ -1.45
VCAN-209ENST00000513016 ZNF777Q9ULD5 760 aaPredicted RBP5.97□□□□□ -1.45
VCAN-209ENST00000513016 SLC24A1O60721 1099 aa5.96□□□□□ -1.46
VCAN-209ENST00000513016 CNGB1Q14028 1251 aaPredicted RBP5.96□□□□□ -1.46
VCAN-209ENST00000513016 SCRIBQ14160 1630 aa5.96□□□□□ -1.46
VCAN-209ENST00000513016 PLPPR3Q6T4P5 718 aa5.94□□□□□ -1.46
VCAN-209ENST00000513016 CHGAP10645 457 aaKnown RBP5.94□□□□□ -1.46
VCAN-209ENST00000513016 P3H3Q8IVL6 736 aa5.94□□□□□ -1.46
VCAN-209ENST00000513016 CSRNP3Q8WYN3 585 aa5.94□□□□□ -1.46
VCAN-209ENST00000513016 CLSPNQ9HAW4 1339 aa5.94□□□□□ -1.46
VCAN-209ENST00000513016 ZNF326Q5BKZ1 582 aaKnown RBP5.94□□□□□ -1.46
VCAN-209ENST00000513016 RB1CC1Q8TDY2 1594 aa5.94□□□□□ -1.46
VCAN-209ENST00000513016 YTHDC1Q96MU7 727 aaKnown RBP5.92□□□□□ -1.46
VCAN-209ENST00000513016 ARID3CA6NKF2 412 aa5.92□□□□□ -1.46
VCAN-209ENST00000513016 LOC105371045A0A1W2PR82 267 aa5.91□□□□□ -1.46
VCAN-209ENST00000513016 NEUROD1Q13562 356 aa5.91□□□□□ -1.46
VCAN-209ENST00000513016 TSPY4P0CV99 314 aa5.91□□□□□ -1.46
VCAN-209ENST00000513016 TSPY10P0CW01 314 aa5.91□□□□□ -1.46
VCAN-209ENST00000513016 ERCC6Q03468 1493 aa5.88□□□□□ -1.47
VCAN-209ENST00000513016 ACIN1Q9UKV3 1341 aaKnown RBP5.87□□□□□ -1.47
VCAN-209ENST00000513016 ARID4BQ4LE39 1312 aaPredicted RBP5.87□□□□□ -1.47
VCAN-209ENST00000513016 MYT1Q01538 1121 aa5.87□□□□□ -1.47
VCAN-209ENST00000513016 NPM2Q86SE8 214 aaKnown RBP5.86□□□□□ -1.47
VCAN-209ENST00000513016 CANXP27824 592 aaKnown RBP5.86□□□□□ -1.47
VCAN-209ENST00000513016 TRHP20396 242 aaPredicted RBP5.86□□□□□ -1.47
VCAN-209ENST00000513016 PLEKHD1A6NEE1 506 aa5.86□□□□□ -1.47
VCAN-209ENST00000513016 ANP32CO43423 234 aa5.86□□□□□ -1.47
VCAN-209ENST00000513016 ZNF316A6NFI3 1004 aaPredicted RBP5.86□□□□□ -1.47
VCAN-209ENST00000513016 PPP1R15AO75807 674 aaPredicted RBP5.85□□□□□ -1.47
VCAN-209ENST00000513016 CCDC180Q9P1Z9 1646 aa5.85□□□□□ -1.47
VCAN-209ENST00000513016 C14orf37Q86TY3 774 aa5.85□□□□□ -1.47
VCAN-209ENST00000513016 SCAF1Q9H7N4 1312 aaKnown RBP5.84□□□□□ -1.47
VCAN-209ENST00000513016 HAP1P54257 671 aaPredicted RBP5.84□□□□□ -1.48
VCAN-209ENST00000513016 NACADO15069 1562 aa5.83□□□□□ -1.48
VCAN-209ENST00000513016 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.83□□□□□ -1.48
VCAN-209ENST00000513016 KCNH8Q96L42 1107 aa5.82□□□□□ -1.48
VCAN-209ENST00000513016 HDGFP51858 240 aaKnown RBP5.8□□□□□ -1.48
VCAN-209ENST00000513016 MTUS2Q5JR59 1369 aa5.8□□□□□ -1.48
VCAN-209ENST00000513016 HRCP23327 699 aa5.8□□□□□ -1.48
VCAN-209ENST00000513016 ZCCHC6Q5VYS8 1495 aaKnown RBP5.8□□□□□ -1.48
VCAN-209ENST00000513016 A0A0G2JS52 829 aa5.8□□□□□ -1.48
VCAN-209ENST00000513016 RSF1Q96T23 1441 aaPredicted RBP5.79□□□□□ -1.48
VCAN-209ENST00000513016 BAZ1BQ9UIG0 1483 aaKnown RBP5.78□□□□□ -1.48
VCAN-209ENST00000513016 TONSLQ96HA7 1378 aa5.78□□□□□ -1.48
VCAN-209ENST00000513016 ZBTB7CA1YPR0 619 aa5.74□□□□□ -1.49
VCAN-209ENST00000513016 RTL5Q5HYW3 569 aaPredicted RBP5.74□□□□□ -1.49
VCAN-209ENST00000513016 CHIC2Q9UKJ5 165 aa5.74□□□□□ -1.49
VCAN-209ENST00000513016 CDCA8Q53HL2 280 aa5.73□□□□□ -1.49
VCAN-209ENST00000513016 EEA1Q15075 1411 aa5.73□□□□□ -1.49
VCAN-209ENST00000513016 DIEXFQ68CQ4 756 aaKnown RBP5.73□□□□□ -1.49
VCAN-209ENST00000513016 PDS5BQ9NTI5 1447 aa5.73□□□□□ -1.49
VCAN-209ENST00000513016 BCL11AQ9H165 835 aa5.72□□□□□ -1.49
VCAN-209ENST00000513016 CFDP1Q9UEE9 299 aaPredicted RBP5.72□□□□□ -1.49
VCAN-209ENST00000513016 KIF27Q86VH2 1401 aa5.72□□□□□ -1.49
VCAN-209ENST00000513016 WDR43Q15061 677 aaKnown RBP eCLIP5.72□□□□□ -1.49
VCAN-209ENST00000513016 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.72□□□□□ -1.49
VCAN-209ENST00000513016 AEBP2Q6ZN18 517 aaPredicted RBP5.71□□□□□ -1.5
VCAN-209ENST00000513016 KANK1Q14678 1352 aa5.71□□□□□ -1.5
VCAN-209ENST00000513016 KDM2AQ9Y2K7 1162 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms