RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 DNAH12Q6ZR08 3092 aa2.68□□□□□ -1.98
USF3-204ENST00000496826 PCNTO95613 3336 aa2.68□□□□□ -1.98
USF3-204ENST00000496826 FREM2Q5SZK8 3169 aa2.68□□□□□ -1.98
USF3-204ENST00000496826 TENM1Q9UKZ4 2725 aa2.67□□□□□ -1.98
USF3-204ENST00000496826 CFAP54Q96N23 3096 aa2.67□□□□□ -1.98
USF3-204ENST00000496826 KALRNO60229 2985 aa2.67□□□□□ -1.98
USF3-204ENST00000496826 CENPFP49454 3210 aa2.67□□□□□ -1.98
USF3-204ENST00000496826 KRTAP1-4P0C5Y4 121 aa2.66□□□□□ -1.98
USF3-204ENST00000496826 EP400Q96L91 3159 aa2.66□□□□□ -1.98
USF3-204ENST00000496826 KRTAP12-3P60328 96 aa2.66□□□□□ -1.98
USF3-204ENST00000496826 KRTAP10-5P60370 271 aa2.65□□□□□ -1.99
USF3-204ENST00000496826 CRCT1Q9UGL9 99 aa2.65□□□□□ -1.99
USF3-204ENST00000496826 CEP350Q5VT06 3117 aa2.65□□□□□ -1.99
USF3-204ENST00000496826 KRTAP7-1Q8IUC3 87 aa2.64□□□□□ -1.99
USF3-204ENST00000496826 PRUNE2Q8WUY3 3088 aa2.63□□□□□ -1.99
USF3-204ENST00000496826 LAMA2P24043 3122 aaKnown RBP2.61□□□□□ -1.99
USF3-204ENST00000496826 RANBP2P49792 3224 aaKnown RBP2.6□□□□□ -1.99
USF3-204ENST00000496826 TENM2Q9NT68 2774 aa2.58□□□□□ -2
USF3-204ENST00000496826 TRANK1O15050 2925 aa2.57□□□□□ -2
USF3-204ENST00000496826 KRTAP8-1Q8IUC2 63 aa2.57□□□□□ -2
USF3-204ENST00000496826 CELSR2Q9HCU4 2923 aa2.57□□□□□ -2
USF3-204ENST00000496826 TGP01266 2768 aa2.56□□□□□ -2
USF3-204ENST00000496826 PDZD2O15018 2839 aa2.56□□□□□ -2
USF3-204ENST00000496826 BRCA2P51587 3418 aa2.54□□□□□ -2
USF3-204ENST00000496826 NBEAL2Q6ZNJ1 2754 aa2.54□□□□□ -2
USF3-204ENST00000496826 LORP23490 312 aaPredicted RBP2.53□□□□□ -2
USF3-204ENST00000496826 LAMA3Q16787 3333 aa2.53□□□□□ -2.01
USF3-204ENST00000496826 FRYLO94915 3013 aa2.52□□□□□ -2.01
USF3-204ENST00000496826 FLNCQ14315 2725 aa2.52□□□□□ -2.01
USF3-204ENST00000496826 HIVEP1P15822 2718 aa2.52□□□□□ -2.01
USF3-204ENST00000496826 VPS13AQ96RL7 3174 aa2.51□□□□□ -2.01
USF3-204ENST00000496826 RYR1P21817 5038 aa2.51□□□□□ -2.01
USF3-204ENST00000496826 OTOGQ6ZRI0 2925 aa2.5□□□□□ -2.01
USF3-204ENST00000496826 TNRC18O15417 2968 aaPredicted RBP2.49□□□□□ -2.01
USF3-204ENST00000496826 ASH1LQ9NR48 2969 aaKnown RBP2.48□□□□□ -2.01
USF3-204ENST00000496826 COL12A1Q99715 3063 aa2.47□□□□□ -2.01
USF3-204ENST00000496826 MKI67P46013 3256 aaKnown RBP2.46□□□□□ -2.02
USF3-204ENST00000496826 FRYQ5TBA9 3013 aa2.46□□□□□ -2.02
USF3-204ENST00000496826 KRTAP10-4P60372 401 aaPredicted RBP2.44□□□□□ -2.02
USF3-204ENST00000496826 USP34Q70CQ2 3546 aa2.44□□□□□ -2.02
USF3-204ENST00000496826 DMXL1Q9Y485 3027 aa2.44□□□□□ -2.02
USF3-204ENST00000496826 CDH23Q9H251 3354 aa2.44□□□□□ -2.02
USF3-204ENST00000496826 ALMS1Q8TCU4 4167 aa2.43□□□□□ -2.02
USF3-204ENST00000496826 COL6A3P12111 3177 aa2.43□□□□□ -2.02
USF3-204ENST00000496826 DNAH14Q0VDD8 3507 aa2.43□□□□□ -2.02
USF3-204ENST00000496826 UNC80Q8N2C7 3258 aa2.43□□□□□ -2.02
USF3-204ENST00000496826 NBEAQ8NFP9 2946 aa2.43□□□□□ -2.02
USF3-204ENST00000496826 SZT2Q5T011 3432 aa2.42□□□□□ -2.02
USF3-204ENST00000496826 CRYBG3Q68DQ2 2970 aa2.42□□□□□ -2.02
USF3-204ENST00000496826 VCANP13611 3396 aa2.42□□□□□ -2.02
USF3-204ENST00000496826 XIRP2A4UGR9 3374 aa2.41□□□□□ -2.02
USF3-204ENST00000496826 KRTAP3-2Q9BYR7 98 aa2.41□□□□□ -2.02
USF3-204ENST00000496826 KRTAP3-1Q9BYR8 98 aa2.4□□□□□ -2.03
USF3-204ENST00000496826 DCHS2Q6V1P9 2916 aa2.39□□□□□ -2.03
USF3-204ENST00000496826 KRTAP12-4P60329 112 aa2.39□□□□□ -2.03
USF3-204ENST00000496826 KRTAP3-3Q9BYR6 98 aa2.39□□□□□ -2.03
USF3-204ENST00000496826 DMXL2Q8TDJ6 3036 aa2.39□□□□□ -2.03
USF3-204ENST00000496826 HTTP42858 3142 aa2.39□□□□□ -2.03
USF3-204ENST00000496826 MYO15AQ9UKN7 3530 aa2.39□□□□□ -2.03
USF3-204ENST00000496826 HRNRQ86YZ3 2850 aaPredicted RBP2.39□□□□□ -2.03
USF3-204ENST00000496826 NF1P21359 2839 aa2.38□□□□□ -2.03
USF3-204ENST00000496826 SPEGQ15772 3267 aa2.37□□□□□ -2.03
USF3-204ENST00000496826 LAMA1P25391 3075 aa2.37□□□□□ -2.03
USF3-204ENST00000496826 TACC2O95359 2948 aa2.37□□□□□ -2.03
USF3-204ENST00000496826 ZZEF1O43149 2961 aa2.37□□□□□ -2.03
USF3-204ENST00000496826 WDFY4Q6ZS81 3184 aa2.36□□□□□ -2.03
USF3-204ENST00000496826 LCE3AQ5TA76 89 aa2.36□□□□□ -2.03
USF3-204ENST00000496826 SPTBN5Q9NRC6 3674 aaKnown RBP2.35□□□□□ -2.03
USF3-204ENST00000496826 FBN3Q75N90 2809 aa2.35□□□□□ -2.03
USF3-204ENST00000496826 ADGRG4Q8IZF6 3080 aa2.35□□□□□ -2.03
USF3-204ENST00000496826 EYSQ5T1H1 3165 aa2.34□□□□□ -2.03
USF3-204ENST00000496826 MEGF8Q7Z7M0 2845 aa2.34□□□□□ -2.03
USF3-204ENST00000496826 CELSR3Q9NYQ7 3312 aa2.33□□□□□ -2.04
USF3-204ENST00000496826 TENM4Q6N022 2769 aa2.32□□□□□ -2.04
USF3-204ENST00000496826 CELSR1Q9NYQ6 3014 aa2.32□□□□□ -2.04
USF3-204ENST00000496826 ATMQ13315 3056 aa2.31□□□□□ -2.04
USF3-204ENST00000496826 COL7A1Q02388 2944 aa2.31□□□□□ -2.04
USF3-204ENST00000496826 LCE3CQ5T5A8 94 aa2.29□□□□□ -2.04
USF3-204ENST00000496826 CFAP47Q6ZTR5 3102 aa2.28□□□□□ -2.04
USF3-204ENST00000496826 UBR4Q5T4S7 5183 aa2.28□□□□□ -2.05
USF3-204ENST00000496826 WDFY3Q8IZQ1 3526 aa2.27□□□□□ -2.05
USF3-204ENST00000496826 MT1HL1P0DM35 61 aa2.27□□□□□ -2.05
USF3-204ENST00000496826 RYR2Q92736 4967 aa2.27□□□□□ -2.05
USF3-204ENST00000496826 NIPBLQ6KC79 2804 aaeCLIP2.27□□□□□ -2.05
USF3-204ENST00000496826 ZANQ9Y493 2812 aa2.27□□□□□ -2.05
USF3-204ENST00000496826 BOD1L1Q8NFC6 3051 aa2.26□□□□□ -2.05
USF3-204ENST00000496826 SPRR2FQ96RM1 72 aa2.24□□□□□ -2.05
USF3-204ENST00000496826 DCHS1Q96JQ0 3298 aa2.23□□□□□ -2.05
USF3-204ENST00000496826 DMDP11532 3685 aa2.21□□□□□ -2.06
USF3-204ENST00000496826 PCLOQ9Y6V0 5065 aa2.21□□□□□ -2.06
USF3-204ENST00000496826 PKD1L1Q8TDX9 2849 aa2.21□□□□□ -2.06
USF3-204ENST00000496826 ASPMQ8IZT6 3477 aa2.2□□□□□ -2.06
USF3-204ENST00000496826 ZFHX4Q86UP3 3567 aa2.19□□□□□ -2.06
USF3-204ENST00000496826 LOC400499M0QZD8 3231 aa2.18□□□□□ -2.06
USF3-204ENST00000496826 HERC1Q15751 4861 aa2.17□□□□□ -2.06
USF3-204ENST00000496826 LCE2BO14633 110 aa2.17□□□□□ -2.06
USF3-204ENST00000496826 SPRR2EP22531 72 aa2.17□□□□□ -2.06
USF3-204ENST00000496826 SPRR2BP35325 72 aa2.17□□□□□ -2.06
USF3-204ENST00000496826 SPRR2AP35326 72 aa2.17□□□□□ -2.06
USF3-204ENST00000496826 SPRR2DP22532 72 aa2.15□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms