RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 APCP25054 2843 aa6.64□□□□□ -1.35
COL6A3-212ENST00000491769 LAMA3Q16787 3333 aa6.64□□□□□ -1.35
COL6A3-212ENST00000491769 TRIOO75962 3097 aa6.64□□□□□ -1.35
COL6A3-212ENST00000491769 UTP20O75691 2785 aaKnown RBP6.61□□□□□ -1.35
COL6A3-212ENST00000491769 LAMA2P24043 3122 aaKnown RBP6.6□□□□□ -1.35
COL6A3-212ENST00000491769 HIVEP1P15822 2718 aa6.59□□□□□ -1.35
COL6A3-212ENST00000491769 CDH23Q9H251 3354 aa6.58□□□□□ -1.36
COL6A3-212ENST00000491769 UNC80Q8N2C7 3258 aa6.58□□□□□ -1.36
COL6A3-212ENST00000491769 HTTP42858 3142 aa6.56□□□□□ -1.36
COL6A3-212ENST00000491769 TACC2O95359 2948 aa6.55□□□□□ -1.36
COL6A3-212ENST00000491769 FREM2Q5SZK8 3169 aa6.54□□□□□ -1.36
COL6A3-212ENST00000491769 TRANK1O15050 2925 aa6.52□□□□□ -1.37
COL6A3-212ENST00000491769 LAMA1P25391 3075 aa6.5□□□□□ -1.37
COL6A3-212ENST00000491769 CELSR3Q9NYQ7 3312 aa6.48□□□□□ -1.37
COL6A3-212ENST00000491769 DMXL2Q8TDJ6 3036 aa6.48□□□□□ -1.37
COL6A3-212ENST00000491769 SZT2Q5T011 3432 aa6.48□□□□□ -1.37
COL6A3-212ENST00000491769 FLNCQ14315 2725 aa6.48□□□□□ -1.37
COL6A3-212ENST00000491769 DNAH14Q0VDD8 3507 aa6.46□□□□□ -1.37
COL6A3-212ENST00000491769 KRTAP12-2P59991 146 aa6.45□□□□□ -1.38
COL6A3-212ENST00000491769 LRBAP50851 2863 aa6.44□□□□□ -1.38
COL6A3-212ENST00000491769 KALRNO60229 2985 aa6.44□□□□□ -1.38
COL6A3-212ENST00000491769 ASH1LQ9NR48 2969 aaKnown RBP6.42□□□□□ -1.38
COL6A3-212ENST00000491769 VPS13AQ96RL7 3174 aa6.39□□□□□ -1.39
COL6A3-212ENST00000491769 TENM2Q9NT68 2774 aa6.39□□□□□ -1.39
COL6A3-212ENST00000491769 COL12A1Q99715 3063 aa6.38□□□□□ -1.39
COL6A3-212ENST00000491769 ATMQ13315 3056 aa6.37□□□□□ -1.39
COL6A3-212ENST00000491769 KRTAP15-1Q3LI76 137 aa6.37□□□□□ -1.39
COL6A3-212ENST00000491769 TENM1Q9UKZ4 2725 aa6.37□□□□□ -1.39
COL6A3-212ENST00000491769 KRTAP13-4Q3LI77 160 aa6.35□□□□□ -1.39
COL6A3-212ENST00000491769 CFAP47Q6ZTR5 3102 aa6.3□□□□□ -1.4
COL6A3-212ENST00000491769 CRCT1Q9UGL9 99 aa6.3□□□□□ -1.4
COL6A3-212ENST00000491769 CELSR2Q9HCU4 2923 aa6.3□□□□□ -1.4
COL6A3-212ENST00000491769 COL6A3P12111 3177 aa6.28□□□□□ -1.4
COL6A3-212ENST00000491769 VCANP13611 3396 aa6.27□□□□□ -1.41
COL6A3-212ENST00000491769 FRYLO94915 3013 aa6.26□□□□□ -1.41
COL6A3-212ENST00000491769 SPTBN5Q9NRC6 3674 aaKnown RBP6.25□□□□□ -1.41
COL6A3-212ENST00000491769 NIPBLQ6KC79 2804 aaeCLIP6.24□□□□□ -1.41
COL6A3-212ENST00000491769 TENM3Q9P273 2699 aa6.24□□□□□ -1.41
COL6A3-212ENST00000491769 DCHS2Q6V1P9 2916 aa6.22□□□□□ -1.41
COL6A3-212ENST00000491769 EYSQ5T1H1 3165 aa6.22□□□□□ -1.41
COL6A3-212ENST00000491769 KRTAP12-1P59990 96 aa6.21□□□□□ -1.41
COL6A3-212ENST00000491769 USP34Q70CQ2 3546 aa6.18□□□□□ -1.42
COL6A3-212ENST00000491769 BOD1L1Q8NFC6 3051 aa6.17□□□□□ -1.42
COL6A3-212ENST00000491769 NF1P21359 2839 aa6.13□□□□□ -1.43
COL6A3-212ENST00000491769 MYO15AQ9UKN7 3530 aa6.12□□□□□ -1.43
COL6A3-212ENST00000491769 TGP01266 2768 aa6.12□□□□□ -1.43
COL6A3-212ENST00000491769 ZZEF1O43149 2961 aa6.12□□□□□ -1.43
COL6A3-212ENST00000491769 ADGRG4Q8IZF6 3080 aa6.12□□□□□ -1.43
COL6A3-212ENST00000491769 SPEGQ15772 3267 aa6.11□□□□□ -1.43
COL6A3-212ENST00000491769 NBEAQ8NFP9 2946 aa6.11□□□□□ -1.43
COL6A3-212ENST00000491769 KRTAP3-1Q9BYR8 98 aa6.04□□□□□ -1.44
COL6A3-212ENST00000491769 PKD1L1Q8TDX9 2849 aa6.02□□□□□ -1.45
COL6A3-212ENST00000491769 KRTAP10-12P60413 245 aa6□□□□□ -1.45
COL6A3-212ENST00000491769 CELSR1Q9NYQ6 3014 aa6□□□□□ -1.45
COL6A3-212ENST00000491769 TNRC18O15417 2968 aaPredicted RBP5.99□□□□□ -1.45
COL6A3-212ENST00000491769 PDZD2O15018 2839 aa5.98□□□□□ -1.45
COL6A3-212ENST00000491769 VWFP04275 2813 aa5.96□□□□□ -1.46
COL6A3-212ENST00000491769 ZANQ9Y493 2812 aa5.92□□□□□ -1.46
COL6A3-212ENST00000491769 MT1HL1P0DM35 61 aa5.9□□□□□ -1.46
COL6A3-212ENST00000491769 WDFY3Q8IZQ1 3526 aa5.9□□□□□ -1.46
COL6A3-212ENST00000491769 ASPMQ8IZT6 3477 aa5.89□□□□□ -1.47
COL6A3-212ENST00000491769 KRTAP4-5Q9BYR2 181 aa5.88□□□□□ -1.47
COL6A3-212ENST00000491769 KRTAP10-6P60371 365 aaPredicted RBP5.86□□□□□ -1.47
COL6A3-212ENST00000491769 FBN2P35556 2912 aa5.86□□□□□ -1.47
COL6A3-212ENST00000491769 HRNRQ86YZ3 2850 aaPredicted RBP5.82□□□□□ -1.48
COL6A3-212ENST00000491769 NBPF19A0A087WUL8 3843 aa5.8□□□□□ -1.48
COL6A3-212ENST00000491769 DMXL1Q9Y485 3027 aa5.79□□□□□ -1.48
COL6A3-212ENST00000491769 DCHS1Q96JQ0 3298 aa5.79□□□□□ -1.48
COL6A3-212ENST00000491769 KRTAP12-3P60328 96 aa5.76□□□□□ -1.49
COL6A3-212ENST00000491769 LORP23490 312 aaPredicted RBP5.76□□□□□ -1.49
COL6A3-212ENST00000491769 MXRA5Q9NR99 2828 aa5.76□□□□□ -1.49
COL6A3-212ENST00000491769 KRTAP8-1Q8IUC2 63 aa5.73□□□□□ -1.49
COL6A3-212ENST00000491769 ZFHX4Q86UP3 3567 aa5.71□□□□□ -1.49
COL6A3-212ENST00000491769 INE1O15225 51 aa5.71□□□□□ -1.49
COL6A3-212ENST00000491769 FBN3Q75N90 2809 aa5.71□□□□□ -1.5
COL6A3-212ENST00000491769 DMDP11532 3685 aa5.69□□□□□ -1.5
COL6A3-212ENST00000491769 LCE3AQ5TA76 89 aa5.68□□□□□ -1.5
COL6A3-212ENST00000491769 LOC400499M0QZD8 3231 aa5.67□□□□□ -1.5
COL6A3-212ENST00000491769 LAMA5O15230 3695 aa5.66□□□□□ -1.5
COL6A3-212ENST00000491769 KRTAP10-5P60370 271 aa5.65□□□□□ -1.5
COL6A3-212ENST00000491769 CSMD1Q96PZ7 3565 aa5.63□□□□□ -1.51
COL6A3-212ENST00000491769 RELNP78509 3460 aa5.62□□□□□ -1.51
COL6A3-212ENST00000491769 KRTAP3-3Q9BYR6 98 aa5.61□□□□□ -1.51
COL6A3-212ENST00000491769 SRRM2Q9UQ35 2752 aaKnown RBP5.61□□□□□ -1.51
COL6A3-212ENST00000491769 KRTAP3-2Q9BYR7 98 aa5.6□□□□□ -1.51
COL6A3-212ENST00000491769 KRTAP10-4P60372 401 aaPredicted RBP5.52□□□□□ -1.53
COL6A3-212ENST00000491769 ZFHX3Q15911 3703 aa5.52□□□□□ -1.53
COL6A3-212ENST00000491769 ANK3Q12955 4377 aaKnown RBP5.5□□□□□ -1.53
COL6A3-212ENST00000491769 MEGF8Q7Z7M0 2845 aa5.48□□□□□ -1.53
COL6A3-212ENST00000491769 ALMS1Q8TCU4 4167 aa5.44□□□□□ -1.54
COL6A3-212ENST00000491769 COL7A1Q02388 2944 aa5.41□□□□□ -1.54
COL6A3-212ENST00000491769 SMG1Q96Q15 3661 aaKnown RBP5.4□□□□□ -1.54
COL6A3-212ENST00000491769 MUC3AQ02505 3323 aa5.39□□□□□ -1.55
COL6A3-212ENST00000491769 KRTAP23-1A1A580 65 aa5.39□□□□□ -1.55
COL6A3-212ENST00000491769 FBN1P35555 2871 aaKnown RBP5.39□□□□□ -1.55
COL6A3-212ENST00000491769 SPENQ96T58 3664 aaKnown RBP5.37□□□□□ -1.55
COL6A3-212ENST00000491769 SPRR2FQ96RM1 72 aa5.35□□□□□ -1.55
COL6A3-212ENST00000491769 OTOGQ6ZRI0 2925 aa5.35□□□□□ -1.55
COL6A3-212ENST00000491769 SVEP1Q4LDE5 3571 aa5.34□□□□□ -1.55
COL6A3-212ENST00000491769 HUWE1Q7Z6Z7 4374 aaKnown RBP5.34□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms