RNA–Protein interactions for RNA: ENST00000477288.5

VARS2-209, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2

Gene VARS2, Length 6,054 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-209ENST00000477288 COL6A3P12111 3177 aa10.54□□□□□ -0.72
VARS2-209ENST00000477288 DNAH14Q0VDD8 3507 aa10.54□□□□□ -0.72
VARS2-209ENST00000477288 ZZEF1O43149 2961 aa10.54□□□□□ -0.72
VARS2-209ENST00000477288 RPS29P62273 56 aaKnown RBP10.52□□□□□ -0.73
VARS2-209ENST00000477288 KRTAP25-1Q3LHN0 102 aa10.51□□□□□ -0.73
VARS2-209ENST00000477288 NIPBLQ6KC79 2804 aaeCLIP10.5□□□□□ -0.73
VARS2-209ENST00000477288 DMBT1Q9UGM3 2413 aaPredicted RBP10.49□□□□□ -0.73
VARS2-209ENST00000477288 APCP25054 2843 aa10.49□□□□□ -0.73
VARS2-209ENST00000477288 Q6ZRN7 208 aaPredicted RBP10.49□□□□□ -0.73
VARS2-209ENST00000477288 ASH1LQ9NR48 2969 aaKnown RBP10.48□□□□□ -0.73
VARS2-209ENST00000477288 KMT2BQ9UMN6 2715 aaPredicted RBP10.47□□□□□ -0.73
VARS2-209ENST00000477288 TENM4Q6N022 2769 aa10.46□□□□□ -0.74
VARS2-209ENST00000477288 KRTAP13-2Q52LG2 175 aa10.42□□□□□ -0.74
VARS2-209ENST00000477288 EYSQ5T1H1 3165 aa10.41□□□□□ -0.74
VARS2-209ENST00000477288 CELSR2Q9HCU4 2923 aa10.41□□□□□ -0.74
VARS2-209ENST00000477288 TNRC18O15417 2968 aaPredicted RBP10.39□□□□□ -0.75
VARS2-209ENST00000477288 ZANQ9Y493 2812 aa10.39□□□□□ -0.75
VARS2-209ENST00000477288 NDUFAF8A1L188 74 aa10.35□□□□□ -0.75
VARS2-209ENST00000477288 KRTAP7-1Q8IUC3 87 aa10.35□□□□□ -0.75
VARS2-209ENST00000477288 TNP1P09430 55 aa10.35□□□□□ -0.75
VARS2-209ENST00000477288 A6NN06 94 aa10.34□□□□□ -0.75
VARS2-209ENST00000477288 C10orf95Q9H7T3 257 aa10.34□□□□□ -0.75
VARS2-209ENST00000477288 DMXL1Q9Y485 3027 aa10.29□□□□□ -0.76
VARS2-209ENST00000477288 CFAP47Q6ZTR5 3102 aa10.29□□□□□ -0.76
VARS2-209ENST00000477288 DCHS2Q6V1P9 2916 aa10.28□□□□□ -0.76
VARS2-209ENST00000477288 CRYBG3Q68DQ2 2970 aa10.27□□□□□ -0.77
VARS2-209ENST00000477288 KRTAP13-1Q8IUC0 172 aa10.24□□□□□ -0.77
VARS2-209ENST00000477288 SPTBN5Q9NRC6 3674 aaKnown RBP10.18□□□□□ -0.78
VARS2-209ENST00000477288 USP34Q70CQ2 3546 aa10.15□□□□□ -0.78
VARS2-209ENST00000477288 KRTAP21-3Q3LHN1 58 aa10.15□□□□□ -0.78
VARS2-209ENST00000477288 SPEGQ15772 3267 aa10.14□□□□□ -0.79
VARS2-209ENST00000477288 HRNRQ86YZ3 2850 aaPredicted RBP10.13□□□□□ -0.79
VARS2-209ENST00000477288 KRTAP10-8P60410 259 aa10.12□□□□□ -0.79
VARS2-209ENST00000477288 NF1P21359 2839 aa10.11□□□□□ -0.79
VARS2-209ENST00000477288 A0A1B0GVY2 172 aa10.11□□□□□ -0.79
VARS2-209ENST00000477288 LOC400499M0QZD8 3231 aa10.07□□□□□ -0.8
VARS2-209ENST00000477288 FBN2P35556 2912 aa10.06□□□□□ -0.8
VARS2-209ENST00000477288 XP32Q5T750 250 aa9.95□□□□□ -0.82
VARS2-209ENST00000477288 TENM3Q9P273 2699 aa9.9□□□□□ -0.82
VARS2-209ENST00000477288 PP632Q6XCG6 107 aa9.89□□□□□ -0.83
VARS2-209ENST00000477288 KRTAP10-10P60014 251 aa9.83□□□□□ -0.84
VARS2-209ENST00000477288 MXRA5Q9NR99 2828 aa9.82□□□□□ -0.84
VARS2-209ENST00000477288 KRTAP1-4P0C5Y4 121 aa9.82□□□□□ -0.84
VARS2-209ENST00000477288 MYO15AQ9UKN7 3530 aa9.81□□□□□ -0.84
VARS2-209ENST00000477288 TENM1Q9UKZ4 2725 aa9.81□□□□□ -0.84
VARS2-209ENST00000477288 TPRXLQ17RH7 258 aa9.73□□□□□ -0.85
VARS2-209ENST00000477288 CELSR1Q9NYQ6 3014 aa9.7□□□□□ -0.86
VARS2-209ENST00000477288 H0YAA0 97 aa9.7□□□□□ -0.86
VARS2-209ENST00000477288 P0C880 135 aa9.68□□□□□ -0.86
VARS2-209ENST00000477288 PRO2289Q9P1D8 64 aa9.68□□□□□ -0.86
VARS2-209ENST00000477288 DCHS1Q96JQ0 3298 aa9.67□□□□□ -0.86
VARS2-209ENST00000477288 TENM2Q9NT68 2774 aa9.65□□□□□ -0.87
VARS2-209ENST00000477288 RELNP78509 3460 aa9.61□□□□□ -0.87
VARS2-209ENST00000477288 PKD1L1Q8TDX9 2849 aa9.59□□□□□ -0.87
VARS2-209ENST00000477288 KRTAP13-3Q3SY46 172 aa9.53□□□□□ -0.88
VARS2-209ENST00000477288 PDZD2O15018 2839 aa9.46□□□□□ -0.9
VARS2-209ENST00000477288 WDFY3Q8IZQ1 3526 aa9.45□□□□□ -0.9
VARS2-209ENST00000477288 TGP01266 2768 aa9.42□□□□□ -0.9
VARS2-209ENST00000477288 VWFP04275 2813 aa9.38□□□□□ -0.91
VARS2-209ENST00000477288 LAMA5O15230 3695 aa9.35□□□□□ -0.91
VARS2-209ENST00000477288 FBN1P35555 2871 aaKnown RBP9.34□□□□□ -0.91
VARS2-209ENST00000477288 OTOGQ6ZRI0 2925 aa9.29□□□□□ -0.92
VARS2-209ENST00000477288 ASPMQ8IZT6 3477 aa9.21□□□□□ -0.94
VARS2-209ENST00000477288 KRTAP12-2P59991 146 aa9.2□□□□□ -0.94
VARS2-209ENST00000477288 MUC3AQ02505 3323 aa9.19□□□□□ -0.94
VARS2-209ENST00000477288 ZFHX4Q86UP3 3567 aa9.19□□□□□ -0.94
VARS2-209ENST00000477288 NBPF19A0A087WUL8 3843 aa9.11□□□□□ -0.95
VARS2-209ENST00000477288 ZFHX3Q15911 3703 aa9.07□□□□□ -0.96
VARS2-209ENST00000477288 SRRM2Q9UQ35 2752 aaKnown RBP9.07□□□□□ -0.96
VARS2-209ENST00000477288 DMDP11532 3685 aa9.06□□□□□ -0.96
VARS2-209ENST00000477288 KRTAP13-4Q3LI77 160 aa9.05□□□□□ -0.96
VARS2-209ENST00000477288 KRTAP15-1Q3LI76 137 aa8.95□□□□□ -0.98
VARS2-209ENST00000477288 KRTAP12-1P59990 96 aa8.93□□□□□ -0.98
VARS2-209ENST00000477288 CSMD1Q96PZ7 3565 aa8.92□□□□□ -0.98
VARS2-209ENST00000477288 SMG1Q96Q15 3661 aaKnown RBP8.89□□□□□ -0.99
VARS2-209ENST00000477288 FBN3Q75N90 2809 aa8.88□□□□□ -0.99
VARS2-209ENST00000477288 ANK3Q12955 4377 aaKnown RBP8.78□□□□□ -1
VARS2-209ENST00000477288 CSMD2Q7Z408 3487 aa8.77□□□□□ -1.01
VARS2-209ENST00000477288 SVEP1Q4LDE5 3571 aa8.73□□□□□ -1.01
VARS2-209ENST00000477288 KRTAP3-1Q9BYR8 98 aa8.72□□□□□ -1.01
VARS2-209ENST00000477288 MEGF8Q7Z7M0 2845 aa8.71□□□□□ -1.02
VARS2-209ENST00000477288 CRCT1Q9UGL9 99 aa8.68□□□□□ -1.02
VARS2-209ENST00000477288 COL7A1Q02388 2944 aa8.68□□□□□ -1.02
VARS2-209ENST00000477288 TRRAPQ9Y4A5 3859 aa8.65□□□□□ -1.02
VARS2-209ENST00000477288 CUBNO60494 3623 aa8.63□□□□□ -1.03
VARS2-209ENST00000477288 SPENQ96T58 3664 aaKnown RBP8.61□□□□□ -1.03
VARS2-209ENST00000477288 KRTAP10-6P60371 365 aaPredicted RBP8.48□□□□□ -1.05
VARS2-209ENST00000477288 MT1HL1P0DM35 61 aa8.44□□□□□ -1.06
VARS2-209ENST00000477288 KRTAP10-12P60413 245 aa8.39□□□□□ -1.07
VARS2-209ENST00000477288 BSNQ9UPA5 3926 aa8.38□□□□□ -1.07
VARS2-209ENST00000477288 INE1O15225 51 aa8.32□□□□□ -1.08
VARS2-209ENST00000477288 KRTAP10-4P60372 401 aaPredicted RBP8.3□□□□□ -1.08
VARS2-209ENST00000477288 KRTAP4-5Q9BYR2 181 aa8.21□□□□□ -1.09
VARS2-209ENST00000477288 HUWE1Q7Z6Z7 4374 aaKnown RBP8.21□□□□□ -1.09
VARS2-209ENST00000477288 KRTAP12-3P60328 96 aa8.13□□□□□ -1.11
VARS2-209ENST00000477288 KRTAP3-3Q9BYR6 98 aa8.12□□□□□ -1.11
VARS2-209ENST00000477288 KRTAP3-2Q9BYR7 98 aa8.11□□□□□ -1.11
VARS2-209ENST00000477288 VPS13CQ709C8 3753 aa8.08□□□□□ -1.12
VARS2-209ENST00000477288 LCE3AQ5TA76 89 aa8.04□□□□□ -1.12
VARS2-209ENST00000477288 KRTAP10-5P60370 271 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms