RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP1.97□□□□□ -2.09
SYNE1-212ENST00000423061 TNRC18O15417 2968 aaPredicted RBP1.97□□□□□ -2.09
SYNE1-212ENST00000423061 TENM3Q9P273 2699 aa1.97□□□□□ -2.09
SYNE1-212ENST00000423061 KRTAP1-3Q8IUG1 177 aa1.97□□□□□ -2.09
SYNE1-212ENST00000423061 TPRXLQ17RH7 258 aa1.97□□□□□ -2.09
SYNE1-212ENST00000423061 H0YAA0 97 aa1.97□□□□□ -2.09
SYNE1-212ENST00000423061 BOD1L1Q8NFC6 3051 aa1.96□□□□□ -2.1
SYNE1-212ENST00000423061 KRTAP7-1Q8IUC3 87 aa1.96□□□□□ -2.1
SYNE1-212ENST00000423061 TGP01266 2768 aa1.96□□□□□ -2.1
SYNE1-212ENST00000423061 DMXL2Q8TDJ6 3036 aa1.96□□□□□ -2.1
SYNE1-212ENST00000423061 KRTAP10-3P60369 221 aa1.96□□□□□ -2.1
SYNE1-212ENST00000423061 S4R3F8 94 aa1.96□□□□□ -2.1
SYNE1-212ENST00000423061 CELSR3Q9NYQ7 3312 aa1.94□□□□□ -2.1
SYNE1-212ENST00000423061 PDZD2O15018 2839 aa1.94□□□□□ -2.1
SYNE1-212ENST00000423061 COL12A1Q99715 3063 aa1.94□□□□□ -2.1
SYNE1-212ENST00000423061 TENM4Q6N022 2769 aa1.94□□□□□ -2.1
SYNE1-212ENST00000423061 WWC2-AS2Q96NR7 200 aa1.94□□□□□ -2.1
SYNE1-212ENST00000423061 RPL37P61927 97 aaKnown RBP1.94□□□□□ -2.1
SYNE1-212ENST00000423061 KRTAP15-1Q3LI76 137 aa1.93□□□□□ -2.1
SYNE1-212ENST00000423061 CFAP47Q6ZTR5 3102 aa1.93□□□□□ -2.1
SYNE1-212ENST00000423061 SZT2Q5T011 3432 aa1.92□□□□□ -2.1
SYNE1-212ENST00000423061 KRTAP1-5Q9BYS1 174 aa1.92□□□□□ -2.1
SYNE1-212ENST00000423061 SPEGQ15772 3267 aa1.92□□□□□ -2.1
SYNE1-212ENST00000423061 DMXL1Q9Y485 3027 aa1.91□□□□□ -2.1
SYNE1-212ENST00000423061 VWFP04275 2813 aa1.9□□□□□ -2.1
SYNE1-212ENST00000423061 PLAC4Q8WY50 150 aa1.9□□□□□ -2.11
SYNE1-212ENST00000423061 COL6A3P12111 3177 aa1.89□□□□□ -2.11
SYNE1-212ENST00000423061 DNAH14Q0VDD8 3507 aa1.88□□□□□ -2.11
SYNE1-212ENST00000423061 PKD1L1Q8TDX9 2849 aa1.86□□□□□ -2.11
SYNE1-212ENST00000423061 EYSQ5T1H1 3165 aa1.86□□□□□ -2.11
SYNE1-212ENST00000423061 FBN1P35555 2871 aaKnown RBP1.86□□□□□ -2.11
SYNE1-212ENST00000423061 SMR3BP02814 79 aaPredicted RBP1.86□□□□□ -2.11
SYNE1-212ENST00000423061 KRTAP10-8P60410 259 aa1.86□□□□□ -2.11
SYNE1-212ENST00000423061 M0QZ58 72 aa1.86□□□□□ -2.11
SYNE1-212ENST00000423061 TENM2Q9NT68 2774 aa1.86□□□□□ -2.11
SYNE1-212ENST00000423061 CELSR1Q9NYQ6 3014 aa1.85□□□□□ -2.11
SYNE1-212ENST00000423061 RPS29P62273 56 aaKnown RBP1.85□□□□□ -2.11
SYNE1-212ENST00000423061 LOC400499M0QZD8 3231 aa1.85□□□□□ -2.11
SYNE1-212ENST00000423061 R4GN34 69 aa1.85□□□□□ -2.11
SYNE1-212ENST00000423061 KRTAP13-1Q8IUC0 172 aa1.85□□□□□ -2.11
SYNE1-212ENST00000423061 PP632Q6XCG6 107 aa1.84□□□□□ -2.11
SYNE1-212ENST00000423061 KRTAP13-3Q3SY46 172 aa1.84□□□□□ -2.11
SYNE1-212ENST00000423061 KRTAP19-4Q3LI73 84 aa1.83□□□□□ -2.12
SYNE1-212ENST00000423061 SRRM2Q9UQ35 2752 aaKnown RBP1.83□□□□□ -2.12
SYNE1-212ENST00000423061 INE1O15225 51 aa1.82□□□□□ -2.12
SYNE1-212ENST00000423061 DCHS1Q96JQ0 3298 aa1.82□□□□□ -2.12
SYNE1-212ENST00000423061 Q6ZRN7 208 aaPredicted RBP1.82□□□□□ -2.12
SYNE1-212ENST00000423061 MYO15AQ9UKN7 3530 aa1.82□□□□□ -2.12
SYNE1-212ENST00000423061 KRTAP10-1P60331 282 aa1.81□□□□□ -2.12
SYNE1-212ENST00000423061 USP34Q70CQ2 3546 aa1.81□□□□□ -2.12
SYNE1-212ENST00000423061 Q5VSD8 79 aa1.81□□□□□ -2.12
SYNE1-212ENST00000423061 KRTAP10-2P60368 255 aa1.8□□□□□ -2.12
SYNE1-212ENST00000423061 MEGF8Q7Z7M0 2845 aa1.79□□□□□ -2.12
SYNE1-212ENST00000423061 KRTAP12-2P59991 146 aa1.79□□□□□ -2.12
SYNE1-212ENST00000423061 KRTAP13-4Q3LI77 160 aa1.78□□□□□ -2.12
SYNE1-212ENST00000423061 MT3P25713 68 aa1.78□□□□□ -2.12
SYNE1-212ENST00000423061 PRO2289Q9P1D8 64 aa1.78□□□□□ -2.12
SYNE1-212ENST00000423061 KRTAP13-2Q52LG2 175 aa1.78□□□□□ -2.13
SYNE1-212ENST00000423061 OTOGQ6ZRI0 2925 aa1.77□□□□□ -2.13
SYNE1-212ENST00000423061 KRTAP3-1Q9BYR8 98 aa1.76□□□□□ -2.13
SYNE1-212ENST00000423061 COL7A1Q02388 2944 aa1.75□□□□□ -2.13
SYNE1-212ENST00000423061 M0R2T5 61 aa1.75□□□□□ -2.13
SYNE1-212ENST00000423061 SPTBN5Q9NRC6 3674 aaKnown RBP1.74□□□□□ -2.13
SYNE1-212ENST00000423061 TNP1P09430 55 aa1.74□□□□□ -2.13
SYNE1-212ENST00000423061 MUC3AQ02505 3323 aa1.73□□□□□ -2.13
SYNE1-212ENST00000423061 KRTAP12-1P59990 96 aa1.73□□□□□ -2.13
SYNE1-212ENST00000423061 KRTAP3-3Q9BYR6 98 aa1.72□□□□□ -2.13
SYNE1-212ENST00000423061 KRTAP3-2Q9BYR7 98 aa1.72□□□□□ -2.13
SYNE1-212ENST00000423061 FBN3Q75N90 2809 aa1.72□□□□□ -2.13
SYNE1-212ENST00000423061 KRTAP10-6P60371 365 aaPredicted RBP1.71□□□□□ -2.14
SYNE1-212ENST00000423061 KRTAP1-4P0C5Y4 121 aa1.7□□□□□ -2.14
SYNE1-212ENST00000423061 RELNP78509 3460 aa1.7□□□□□ -2.14
SYNE1-212ENST00000423061 XP32Q5T750 250 aa1.7□□□□□ -2.14
SYNE1-212ENST00000423061 ASPMQ8IZT6 3477 aa1.7□□□□□ -2.14
SYNE1-212ENST00000423061 WDFY3Q8IZQ1 3526 aa1.69□□□□□ -2.14
SYNE1-212ENST00000423061 ZFHX4Q86UP3 3567 aa1.68□□□□□ -2.14
SYNE1-212ENST00000423061 CUBNO60494 3623 aa1.68□□□□□ -2.14
SYNE1-212ENST00000423061 ZFHX3Q15911 3703 aa1.66□□□□□ -2.14
SYNE1-212ENST00000423061 LAMA5O15230 3695 aa1.62□□□□□ -2.15
SYNE1-212ENST00000423061 DMDP11532 3685 aa1.61□□□□□ -2.15
SYNE1-212ENST00000423061 CSMD1Q96PZ7 3565 aa1.59□□□□□ -2.16
SYNE1-212ENST00000423061 KRTAP21-3Q3LHN1 58 aa1.57□□□□□ -2.16
SYNE1-212ENST00000423061 SVEP1Q4LDE5 3571 aa1.57□□□□□ -2.16
SYNE1-212ENST00000423061 SMG1Q96Q15 3661 aaKnown RBP1.57□□□□□ -2.16
SYNE1-212ENST00000423061 CSMD2Q7Z408 3487 aa1.53□□□□□ -2.17
SYNE1-212ENST00000423061 SPENQ96T58 3664 aaKnown RBP1.53□□□□□ -2.17
SYNE1-212ENST00000423061 A0A1B0GVY2 172 aa1.52□□□□□ -2.17
SYNE1-212ENST00000423061 KRTAP10-10P60014 251 aa1.51□□□□□ -2.17
SYNE1-212ENST00000423061 ALMS1Q8TCU4 4167 aa1.49□□□□□ -2.17
SYNE1-212ENST00000423061 AKAP9Q99996 3911 aa1.48□□□□□ -2.17
SYNE1-212ENST00000423061 LORP23490 312 aaPredicted RBP1.47□□□□□ -2.17
SYNE1-212ENST00000423061 KRTAP10-12P60413 245 aa1.46□□□□□ -2.18
SYNE1-212ENST00000423061 BSNQ9UPA5 3926 aa1.44□□□□□ -2.18
SYNE1-212ENST00000423061 LCE3AQ5TA76 89 aa1.42□□□□□ -2.18
SYNE1-212ENST00000423061 SPRR5A0A1B0GTR4 108 aa1.41□□□□□ -2.18
SYNE1-212ENST00000423061 NBPF19A0A087WUL8 3843 aa1.41□□□□□ -2.18
SYNE1-212ENST00000423061 HUWE1Q7Z6Z7 4374 aaKnown RBP1.41□□□□□ -2.18
SYNE1-212ENST00000423061 KRTAP10-4P60372 401 aaPredicted RBP1.4□□□□□ -2.19
SYNE1-212ENST00000423061 MT1HL1P0DM35 61 aa1.4□□□□□ -2.19
SYNE1-212ENST00000423061 LCE2DQ5TA82 110 aaPredicted RBP1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms