RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 PELP1Q8IZL8 1130 aaKnown RBP6.03□□□□□ -1.44
SYNE1-212ENST00000423061 MYT1Q01538 1121 aa5.9□□□□□ -1.47
SYNE1-212ENST00000423061 PPARGC1BQ86YN6 1023 aaKnown RBP5.62□□□□□ -1.51
SYNE1-212ENST00000423061 HRCP23327 699 aa5.6□□□□□ -1.51
SYNE1-212ENST00000423061 PCGF6Q9BYE7 350 aa5.56□□□□□ -1.52
SYNE1-212ENST00000423061 BCL11AQ9H165 835 aa5.51□□□□□ -1.53
SYNE1-212ENST00000423061 SCAF1Q9H7N4 1312 aaKnown RBP5.49□□□□□ -1.53
SYNE1-212ENST00000423061 TTBK1Q5TCY1 1321 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-212ENST00000423061 ERICH6Q7L0X2 663 aa5.45□□□□□ -1.54
SYNE1-212ENST00000423061 PRKCSHP14314 528 aaPredicted RBP5.44□□□□□ -1.54
SYNE1-212ENST00000423061 CENPBP07199 599 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-212ENST00000423061 NISCHQ9Y2I1 1504 aa5.41□□□□□ -1.54
SYNE1-212ENST00000423061 FAM9AQ8IZU1 332 aaPredicted RBP5.4□□□□□ -1.55
SYNE1-212ENST00000423061 GTF3C3Q9Y5Q9 886 aa5.36□□□□□ -1.55
SYNE1-212ENST00000423061 YTHDC1Q96MU7 727 aaKnown RBP5.36□□□□□ -1.55
SYNE1-212ENST00000423061 SLC24A1O60721 1099 aa5.32□□□□□ -1.56
SYNE1-212ENST00000423061 ACIN1Q9UKV3 1341 aaKnown RBP5.29□□□□□ -1.56
SYNE1-212ENST00000423061 NEUROD1Q13562 356 aa5.25□□□□□ -1.57
SYNE1-212ENST00000423061 CSRNP3Q8WYN3 585 aa5.21□□□□□ -1.57
SYNE1-212ENST00000423061 ZEB1P37275 1124 aaPredicted RBP5.21□□□□□ -1.57
SYNE1-212ENST00000423061 ANP32EQ9BTT0 268 aa5.2□□□□□ -1.58
SYNE1-212ENST00000423061 SUPT5HO00267 1087 aaKnown RBP5.19□□□□□ -1.58
SYNE1-212ENST00000423061 CCDC136Q96JN2 1154 aa5.18□□□□□ -1.58
SYNE1-212ENST00000423061 EIF5BO60841 1220 aaKnown RBP5.16□□□□□ -1.58
SYNE1-212ENST00000423061 ANO8Q9HCE9 1232 aaPredicted RBP5.15□□□□□ -1.59
SYNE1-212ENST00000423061 APLP2Q06481 763 aa5.14□□□□□ -1.59
SYNE1-212ENST00000423061 BCANQ96GW7 911 aa5.13□□□□□ -1.59
SYNE1-212ENST00000423061 EHMT2Q96KQ7 1210 aa5.12□□□□□ -1.59
SYNE1-212ENST00000423061 RANGAP1P46060 587 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-212ENST00000423061 SHROOM4Q9ULL8 1493 aa5.1□□□□□ -1.59
SYNE1-212ENST00000423061 DIEXFQ68CQ4 756 aaKnown RBP5.1□□□□□ -1.59
SYNE1-212ENST00000423061 PLEKHG5O94827 1062 aa5.09□□□□□ -1.59
SYNE1-212ENST00000423061 CCER1Q8TC90 406 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-212ENST00000423061 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-212ENST00000423061 TRIM26Q12899 539 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-212ENST00000423061 DCAF8L2P0C7V8 631 aa5.07□□□□□ -1.6
SYNE1-212ENST00000423061 RTN4Q9NQC3 1192 aaKnown RBP5.06□□□□□ -1.6
SYNE1-212ENST00000423061 LOC105371045A0A1W2PR82 267 aa5.05□□□□□ -1.6
SYNE1-212ENST00000423061 SALL2Q9Y467 1007 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-212ENST00000423061 DEKP35659 375 aaKnown RBP5.01□□□□□ -1.61
SYNE1-212ENST00000423061 PODXL2Q9NZ53 605 aa5.01□□□□□ -1.61
SYNE1-212ENST00000423061 NEFLP07196 543 aa5.01□□□□□ -1.61
SYNE1-212ENST00000423061 TSHZ2Q9NRE2 1034 aa4.99□□□□□ -1.61
SYNE1-212ENST00000423061 NBR1Q14596 966 aa4.99□□□□□ -1.61
SYNE1-212ENST00000423061 DAXXQ9UER7 740 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-212ENST00000423061 A0A0U1RQG5 324 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-212ENST00000423061 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-212ENST00000423061 ITGAEP38570 1179 aa4.97□□□□□ -1.61
SYNE1-212ENST00000423061 PKNOX2Q96KN3 472 aa4.96□□□□□ -1.61
SYNE1-212ENST00000423061 RTL5Q5HYW3 569 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-212ENST00000423061 AMER1Q5JTC6 1135 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-212ENST00000423061 MIER1Q8N108 512 aa4.94□□□□□ -1.62
SYNE1-212ENST00000423061 GLIPR1L2Q4G1C9 344 aa4.93□□□□□ -1.62
SYNE1-212ENST00000423061 MYT1LQ9UL68 1186 aa4.9□□□□□ -1.62
SYNE1-212ENST00000423061 SUPT16HQ9Y5B9 1047 aaKnown RBP4.9□□□□□ -1.62
SYNE1-212ENST00000423061 UBE2Q2Q8WVN8 375 aa4.9□□□□□ -1.62
SYNE1-212ENST00000423061 FKBP8Q14318 412 aa4.9□□□□□ -1.62
SYNE1-212ENST00000423061 VSIG10Q8N0Z9 540 aa4.89□□□□□ -1.63
SYNE1-212ENST00000423061 CDK11AQ9UQ88 783 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-212ENST00000423061 CHIC1Q5VXU3 224 aa4.89□□□□□ -1.63
SYNE1-212ENST00000423061 RBM19Q9Y4C8 960 aaKnown RBP4.88□□□□□ -1.63
SYNE1-212ENST00000423061 TIMELESSQ9UNS1 1208 aa4.87□□□□□ -1.63
SYNE1-212ENST00000423061 IL27Q8NEV9 243 aa4.86□□□□□ -1.63
SYNE1-212ENST00000423061 ZNF316A6NFI3 1004 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-212ENST00000423061 PDE4CQ08493 712 aa4.84□□□□□ -1.63
SYNE1-212ENST00000423061 ERICH6BQ5W0A0 696 aa4.82□□□□□ -1.64
SYNE1-212ENST00000423061 AEBP2Q6ZN18 517 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-212ENST00000423061 IRX6P78412 446 aaPredicted RBP4.8□□□□□ -1.64
SYNE1-212ENST00000423061 CLSPNQ9HAW4 1339 aa4.8□□□□□ -1.64
SYNE1-212ENST00000423061 ZMYND15Q9H091 742 aa4.79□□□□□ -1.64
SYNE1-212ENST00000423061 ARXQ96QS3 562 aa4.78□□□□□ -1.64
SYNE1-212ENST00000423061 LAS1LQ9Y4W2 734 aaKnown RBP4.78□□□□□ -1.64
SYNE1-212ENST00000423061 NPM2Q86SE8 214 aaKnown RBP4.78□□□□□ -1.64
SYNE1-212ENST00000423061 BCL11BQ9C0K0 894 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-212ENST00000423061 ARID4BQ4LE39 1312 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-212ENST00000423061 NAP1L5Q96NT1 182 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-212ENST00000423061 NEFMP07197 916 aa4.77□□□□□ -1.65
SYNE1-212ENST00000423061 MSH5O43196 834 aa4.76□□□□□ -1.65
SYNE1-212ENST00000423061 NOP58Q9Y2X3 529 aaKnown RBP4.76□□□□□ -1.65
SYNE1-212ENST00000423061 ANP32AP39687 249 aaKnown RBP4.76□□□□□ -1.65
SYNE1-212ENST00000423061 BRPF3Q9ULD4 1205 aa4.75□□□□□ -1.65
SYNE1-212ENST00000423061 RBM10P98175 930 aaKnown RBP4.75□□□□□ -1.65
SYNE1-212ENST00000423061 HNRNPUL2Q1KMD3 747 aaKnown RBP4.75□□□□□ -1.65
SYNE1-212ENST00000423061 TRIM41Q8WV44 630 aa4.74□□□□□ -1.65
SYNE1-212ENST00000423061 PDIA4P13667 645 aaKnown RBP4.74□□□□□ -1.65
SYNE1-212ENST00000423061 ZBTB47Q9UFB7 747 aaPredicted RBP4.74□□□□□ -1.65
SYNE1-212ENST00000423061 RSPH6AQ9H0K4 717 aa4.73□□□□□ -1.65
SYNE1-212ENST00000423061 CCDC180Q9P1Z9 1646 aa4.73□□□□□ -1.65
SYNE1-212ENST00000423061 DCAF1Q9Y4B6 1507 aa4.72□□□□□ -1.65
SYNE1-212ENST00000423061 HSP90AA1P07900 732 aaKnown RBP4.72□□□□□ -1.65
SYNE1-212ENST00000423061 PAXIP1Q6ZW49 1069 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-212ENST00000423061 HSP90AA2PQ14568 343 aaPredicted RBP4.7□□□□□ -1.66
SYNE1-212ENST00000423061 NCBP3Q53F19 620 aaKnown RBP4.69□□□□□ -1.66
SYNE1-212ENST00000423061 ARID3AQ99856 593 aa4.68□□□□□ -1.66
SYNE1-212ENST00000423061 KLHL34Q8N239 644 aa4.68□□□□□ -1.66
SYNE1-212ENST00000423061 HAP1P54257 671 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-212ENST00000423061 TRIM52Q96A61 297 aa4.67□□□□□ -1.66
SYNE1-212ENST00000423061 PAK3O75914 559 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-212ENST00000423061 CNGB1Q14028 1251 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-212ENST00000423061 FANCIQ9NVI1 1328 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms