RNA–Protein interactions for RNA: ENST00000357388.7

SMC4-202, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,471 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-202ENST00000357388 NIPBLQ6KC79 2804 aaeCLIP6.3□□□□□ -1.42e-6■■■■■ 27.8
SMC4-202ENST00000357388 CFAP54Q96N23 3096 aa6.29□□□□□ -1.4
SMC4-202ENST00000357388 TENM3Q9P273 2699 aa6.26□□□□□ -1.41
SMC4-202ENST00000357388 VCANP13611 3396 aa6.24□□□□□ -1.41
SMC4-202ENST00000357388 REV3LO60673 3130 aa6.21□□□□□ -1.42
SMC4-202ENST00000357388 TRANK1O15050 2925 aa6.2□□□□□ -1.42
SMC4-202ENST00000357388 KRTAP15-1Q3LI76 137 aa6.19□□□□□ -1.42
SMC4-202ENST00000357388 TACC2O95359 2948 aa6.18□□□□□ -1.42
SMC4-202ENST00000357388 LAMA3Q16787 3333 aa6.16□□□□□ -1.42
SMC4-202ENST00000357388 TENM1Q9UKZ4 2725 aa6.16□□□□□ -1.42
SMC4-202ENST00000357388 CRYBG3Q68DQ2 2970 aa6.15□□□□□ -1.43
SMC4-202ENST00000357388 WDFY4Q6ZS81 3184 aa6.14□□□□□ -1.43
SMC4-202ENST00000357388 LAMA1P25391 3075 aa6.13□□□□□ -1.43
SMC4-202ENST00000357388 PRUNE2Q8WUY3 3088 aa6.09□□□□□ -1.43
SMC4-202ENST00000357388 LRBAP50851 2863 aa6.08□□□□□ -1.44
SMC4-202ENST00000357388 KRTAP3-1Q9BYR8 98 aa6.08□□□□□ -1.44
SMC4-202ENST00000357388 TENM2Q9NT68 2774 aa6.06□□□□□ -1.44
SMC4-202ENST00000357388 ASH1LQ9NR48 2969 aaKnown RBP6.04□□□□□ -1.44
SMC4-202ENST00000357388 KALRNO60229 2985 aa6.04□□□□□ -1.44
SMC4-202ENST00000357388 CELSR2Q9HCU4 2923 aa6.03□□□□□ -1.44
SMC4-202ENST00000357388 KRTAP10-6P60371 365 aaPredicted RBP6.03□□□□□ -1.44
SMC4-202ENST00000357388 DMXL2Q8TDJ6 3036 aa6.02□□□□□ -1.45
SMC4-202ENST00000357388 CDH23Q9H251 3354 aa6.02□□□□□ -1.45
SMC4-202ENST00000357388 RANBP2P49792 3224 aaKnown RBP6.02□□□□□ -1.45
SMC4-202ENST00000357388 LAMA2P24043 3122 aaKnown RBP6□□□□□ -1.45
SMC4-202ENST00000357388 NF1P21359 2839 aa5.98□□□□□ -1.45
SMC4-202ENST00000357388 DCHS2Q6V1P9 2916 aa5.97□□□□□ -1.45
SMC4-202ENST00000357388 DNAH14Q0VDD8 3507 aa5.97□□□□□ -1.45
SMC4-202ENST00000357388 BRCA2P51587 3418 aa5.97□□□□□ -1.45
SMC4-202ENST00000357388 TGP01266 2768 aa5.97□□□□□ -1.45
SMC4-202ENST00000357388 WDFY3Q8IZQ1 3526 aa5.96□□□□□ -1.46
SMC4-202ENST00000357388 COL12A1Q99715 3063 aa5.96□□□□□ -1.46
SMC4-202ENST00000357388 ATMQ13315 3056 aa5.95□□□□□ -1.46
SMC4-202ENST00000357388 SZT2Q5T011 3432 aa5.93□□□□□ -1.46
SMC4-202ENST00000357388 HTTP42858 3142 aa5.93□□□□□ -1.46
SMC4-202ENST00000357388 TRIOO75962 3097 aa5.9□□□□□ -1.46
SMC4-202ENST00000357388 KRTAP23-1A1A580 65 aa5.88□□□□□ -1.47
SMC4-202ENST00000357388 PDZD2O15018 2839 aa5.86□□□□□ -1.47
SMC4-202ENST00000357388 MYO15AQ9UKN7 3530 aa5.85□□□□□ -1.47
SMC4-202ENST00000357388 UNC80Q8N2C7 3258 aa5.84□□□□□ -1.47
SMC4-202ENST00000357388 SPEGQ15772 3267 aa5.83□□□□□ -1.48
SMC4-202ENST00000357388 FRYLO94915 3013 aa5.82□□□□□ -1.48
SMC4-202ENST00000357388 VPS13AQ96RL7 3174 aa5.8□□□□□ -1.48
SMC4-202ENST00000357388 COL6A3P12111 3177 aa5.8□□□□□ -1.48
SMC4-202ENST00000357388 ZZEF1O43149 2961 aa5.8□□□□□ -1.48
SMC4-202ENST00000357388 KRTAP10-12P60413 245 aa5.77□□□□□ -1.49
SMC4-202ENST00000357388 KRTAP3-2Q9BYR7 98 aa5.76□□□□□ -1.49
SMC4-202ENST00000357388 FREM2Q5SZK8 3169 aa5.75□□□□□ -1.49
SMC4-202ENST00000357388 MKI67P46013 3256 aaKnown RBP5.74□□□□□ -1.49
SMC4-202ENST00000357388 SPTBN5Q9NRC6 3674 aaKnown RBP5.74□□□□□ -1.49
SMC4-202ENST00000357388 PKD1L1Q8TDX9 2849 aa5.74□□□□□ -1.49
SMC4-202ENST00000357388 ZANQ9Y493 2812 aa5.7□□□□□ -1.5
SMC4-202ENST00000357388 NBEAQ8NFP9 2946 aa5.7□□□□□ -1.5
SMC4-202ENST00000357388 EYSQ5T1H1 3165 aa5.69□□□□□ -1.5
SMC4-202ENST00000357388 CRCT1Q9UGL9 99 aa5.68□□□□□ -1.5
SMC4-202ENST00000357388 ADGRG4Q8IZF6 3080 aa5.68□□□□□ -1.5
SMC4-202ENST00000357388 TNRC18O15417 2968 aaPredicted RBP5.67□□□□□ -1.5
SMC4-202ENST00000357388 KRTAP3-3Q9BYR6 98 aa5.67□□□□□ -1.5
SMC4-202ENST00000357388 KRTAP12-3P60328 96 aa5.66□□□□□ -1.5
SMC4-202ENST00000357388 MT1HL1P0DM35 61 aa5.65□□□□□ -1.51
SMC4-202ENST00000357388 MXRA5Q9NR99 2828 aa5.64□□□□□ -1.51
SMC4-202ENST00000357388 VWFP04275 2813 aa5.64□□□□□ -1.51
SMC4-202ENST00000357388 FBN3Q75N90 2809 aa5.62□□□□□ -1.51
SMC4-202ENST00000357388 BOD1L1Q8NFC6 3051 aa5.62□□□□□ -1.51
SMC4-202ENST00000357388 CELSR1Q9NYQ6 3014 aa5.6□□□□□ -1.51
SMC4-202ENST00000357388 FBN2P35556 2912 aa5.54□□□□□ -1.52
SMC4-202ENST00000357388 DMDP11532 3685 aa5.53□□□□□ -1.52
SMC4-202ENST00000357388 LCE3AQ5TA76 89 aa5.51□□□□□ -1.53
SMC4-202ENST00000357388 HRNRQ86YZ3 2850 aaPredicted RBP5.5□□□□□ -1.53
SMC4-202ENST00000357388 DMXL1Q9Y485 3027 aa5.47□□□□□ -1.53
SMC4-202ENST00000357388 SRRM2Q9UQ35 2752 aaKnown RBP5.47□□□□□ -1.53
SMC4-202ENST00000357388 CELSR3Q9NYQ7 3312 aa5.47□□□□□ -1.53
SMC4-202ENST00000357388 CFAP47Q6ZTR5 3102 aa5.47□□□□□ -1.53
SMC4-202ENST00000357388 SPENQ96T58 3664 aaKnown RBP5.4□□□□□ -1.54
SMC4-202ENST00000357388 KRTAP8-1Q8IUC2 63 aa5.39□□□□□ -1.55
SMC4-202ENST00000357388 DCHS1Q96JQ0 3298 aa5.38□□□□□ -1.55
SMC4-202ENST00000357388 KRTAP10-5P60370 271 aa5.37□□□□□ -1.55
SMC4-202ENST00000357388 RELNP78509 3460 aa5.35□□□□□ -1.55
SMC4-202ENST00000357388 KRTAP4-5Q9BYR2 181 aa5.35□□□□□ -1.55
SMC4-202ENST00000357388 ASPMQ8IZT6 3477 aa5.35□□□□□ -1.55
SMC4-202ENST00000357388 KRTAP10-4P60372 401 aaPredicted RBP5.34□□□□□ -1.55
SMC4-202ENST00000357388 LOC400499M0QZD8 3231 aa5.32□□□□□ -1.56
SMC4-202ENST00000357388 ZFHX4Q86UP3 3567 aa5.3□□□□□ -1.56
SMC4-202ENST00000357388 MEGF8Q7Z7M0 2845 aa5.27□□□□□ -1.57
SMC4-202ENST00000357388 SMG1Q96Q15 3661 aaKnown RBP5.27□□□□□ -1.57
SMC4-202ENST00000357388 LORP23490 312 aaPredicted RBP5.19□□□□□ -1.58
SMC4-202ENST00000357388 COL7A1Q02388 2944 aa5.19□□□□□ -1.58
SMC4-202ENST00000357388 MUC3AQ02505 3323 aa5.13□□□□□ -1.59
SMC4-202ENST00000357388 FBN1P35555 2871 aaKnown RBP5.11□□□□□ -1.59
SMC4-202ENST00000357388 CSMD1Q96PZ7 3565 aa5.1□□□□□ -1.59
SMC4-202ENST00000357388 KRTAP19-4Q3LI73 84 aa5.09□□□□□ -1.59
SMC4-202ENST00000357388 OTOGQ6ZRI0 2925 aa5.08□□□□□ -1.6
SMC4-202ENST00000357388 ZFHX3Q15911 3703 aa5.05□□□□□ -1.6
SMC4-202ENST00000357388 KRTAP10-7P60409 375 aaPredicted RBP5.04□□□□□ -1.6
SMC4-202ENST00000357388 LAMA5O15230 3695 aa5.03□□□□□ -1.6
SMC4-202ENST00000357388 SVEP1Q4LDE5 3571 aa5.02□□□□□ -1.61
SMC4-202ENST00000357388 HUWE1Q7Z6Z7 4374 aaKnown RBP5□□□□□ -1.61
SMC4-202ENST00000357388 MT1HP80294 61 aa4.99□□□□□ -1.61
SMC4-202ENST00000357388 SPRR2FQ96RM1 72 aa4.96□□□□□ -1.62
SMC4-202ENST00000357388 ALMS1Q8TCU4 4167 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 182.3 ms