RNA–Protein interactions for RNA: ENST00000336648.8

HLCS-201, Transcript of holocarboxylase synthetase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HLCS, Length 6,010 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLCS-201ENST00000336648 PRUNE2Q8WUY3 3088 aa6.62□□□□□ -1.35
HLCS-201ENST00000336648 MUC3AQ02505 3323 aa6.58□□□□□ -1.36
HLCS-201ENST00000336648 ITPR1Q14643 2758 aa6.57□□□□□ -1.36
HLCS-201ENST00000336648 KRTAP12-2P59991 146 aa6.55□□□□□ -1.36
HLCS-201ENST00000336648 APCP25054 2843 aa6.54□□□□□ -1.36
HLCS-201ENST00000336648 COL6A3P12111 3177 aa6.54□□□□□ -1.36
HLCS-201ENST00000336648 UNC80Q8N2C7 3258 aa6.51□□□□□ -1.37
HLCS-201ENST00000336648 CFAP54Q96N23 3096 aa6.51□□□□□ -1.37
HLCS-201ENST00000336648 KRTAP13-4Q3LI77 160 aa6.51□□□□□ -1.37
HLCS-201ENST00000336648 VCANP13611 3396 aa6.5□□□□□ -1.37
HLCS-201ENST00000336648 USP34Q70CQ2 3546 aa6.5□□□□□ -1.37
HLCS-201ENST00000336648 DSPP15924 2871 aaKnown RBP6.48□□□□□ -1.37
HLCS-201ENST00000336648 NIPBLQ6KC79 2804 aaeCLIP6.46□□□□□ -1.38
HLCS-201ENST00000336648 DMDP11532 3685 aa6.45□□□□□ -1.38
HLCS-201ENST00000336648 FRYQ5TBA9 3013 aa6.45□□□□□ -1.38
HLCS-201ENST00000336648 HIVEP1P15822 2718 aa6.45□□□□□ -1.38
HLCS-201ENST00000336648 INE1O15225 51 aa6.44□□□□□ -1.38
HLCS-201ENST00000336648 UTP20O75691 2785 aaKnown RBP6.43□□□□□ -1.38
HLCS-201ENST00000336648 TENM4Q6N022 2769 aa6.43□□□□□ -1.38
HLCS-201ENST00000336648 DNAH14Q0VDD8 3507 aa6.39□□□□□ -1.39
HLCS-201ENST00000336648 KRTAP15-1Q3LI76 137 aa6.36□□□□□ -1.39
HLCS-201ENST00000336648 MYO15AQ9UKN7 3530 aa6.36□□□□□ -1.39
HLCS-201ENST00000336648 KRTAP12-1P59990 96 aa6.35□□□□□ -1.39
HLCS-201ENST00000336648 TRIOO75962 3097 aa6.34□□□□□ -1.39
HLCS-201ENST00000336648 LAMA1P25391 3075 aa6.29□□□□□ -1.4
HLCS-201ENST00000336648 FLNCQ14315 2725 aa6.29□□□□□ -1.4
HLCS-201ENST00000336648 WDFY4Q6ZS81 3184 aa6.28□□□□□ -1.4
HLCS-201ENST00000336648 WDFY3Q8IZQ1 3526 aa6.28□□□□□ -1.4
HLCS-201ENST00000336648 LRBAP50851 2863 aa6.23□□□□□ -1.41
HLCS-201ENST00000336648 TACC2O95359 2948 aa6.23□□□□□ -1.41
HLCS-201ENST00000336648 VPS13AQ96RL7 3174 aa6.22□□□□□ -1.41
HLCS-201ENST00000336648 KALRNO60229 2985 aa6.21□□□□□ -1.42
HLCS-201ENST00000336648 TENM3Q9P273 2699 aa6.19□□□□□ -1.42
HLCS-201ENST00000336648 FRYLO94915 3013 aa6.19□□□□□ -1.42
HLCS-201ENST00000336648 KRTAP3-1Q9BYR8 98 aa6.19□□□□□ -1.42
HLCS-201ENST00000336648 CELSR3Q9NYQ7 3312 aa6.18□□□□□ -1.42
HLCS-201ENST00000336648 TGP01266 2768 aa6.17□□□□□ -1.42
HLCS-201ENST00000336648 ASH1LQ9NR48 2969 aaKnown RBP6.17□□□□□ -1.42
HLCS-201ENST00000336648 SPEGQ15772 3267 aa6.15□□□□□ -1.42
HLCS-201ENST00000336648 CELSR2Q9HCU4 2923 aa6.13□□□□□ -1.43
HLCS-201ENST00000336648 FREM2Q5SZK8 3169 aa6.12□□□□□ -1.43
HLCS-201ENST00000336648 TENM1Q9UKZ4 2725 aa6.11□□□□□ -1.43
HLCS-201ENST00000336648 NBEAQ8NFP9 2946 aa6.11□□□□□ -1.43
HLCS-201ENST00000336648 ATMQ13315 3056 aa6.11□□□□□ -1.43
HLCS-201ENST00000336648 DMXL2Q8TDJ6 3036 aa6.09□□□□□ -1.43
HLCS-201ENST00000336648 KRTAP10-6P60371 365 aaPredicted RBP6.09□□□□□ -1.44
HLCS-201ENST00000336648 ASPMQ8IZT6 3477 aa6.08□□□□□ -1.44
HLCS-201ENST00000336648 DCHS2Q6V1P9 2916 aa6.08□□□□□ -1.44
HLCS-201ENST00000336648 COL12A1Q99715 3063 aa6.07□□□□□ -1.44
HLCS-201ENST00000336648 DCHS1Q96JQ0 3298 aa6.07□□□□□ -1.44
HLCS-201ENST00000336648 CRYBG3Q68DQ2 2970 aa6.05□□□□□ -1.44
HLCS-201ENST00000336648 ZFHX4Q86UP3 3567 aa6.04□□□□□ -1.44
HLCS-201ENST00000336648 TENM2Q9NT68 2774 aa6.03□□□□□ -1.44
HLCS-201ENST00000336648 SPENQ96T58 3664 aaKnown RBP6.02□□□□□ -1.45
HLCS-201ENST00000336648 DMXL1Q9Y485 3027 aa6□□□□□ -1.45
HLCS-201ENST00000336648 NF1P21359 2839 aa5.95□□□□□ -1.46
HLCS-201ENST00000336648 ADGRG4Q8IZF6 3080 aa5.94□□□□□ -1.46
HLCS-201ENST00000336648 BOD1L1Q8NFC6 3051 aa5.94□□□□□ -1.46
HLCS-201ENST00000336648 LAMA5O15230 3695 aa5.94□□□□□ -1.46
HLCS-201ENST00000336648 ZZEF1O43149 2961 aa5.94□□□□□ -1.46
HLCS-201ENST00000336648 BSNQ9UPA5 3926 aa5.93□□□□□ -1.46
HLCS-201ENST00000336648 CFAP47Q6ZTR5 3102 aa5.91□□□□□ -1.46
HLCS-201ENST00000336648 KRTAP23-1A1A580 65 aa5.9□□□□□ -1.46
HLCS-201ENST00000336648 CRCT1Q9UGL9 99 aa5.9□□□□□ -1.47
HLCS-201ENST00000336648 KRTAP10-12P60413 245 aa5.89□□□□□ -1.47
HLCS-201ENST00000336648 ZANQ9Y493 2812 aa5.88□□□□□ -1.47
HLCS-201ENST00000336648 PDZD2O15018 2839 aa5.85□□□□□ -1.47
HLCS-201ENST00000336648 KRTAP3-2Q9BYR7 98 aa5.83□□□□□ -1.48
HLCS-201ENST00000336648 HRNRQ86YZ3 2850 aaPredicted RBP5.82□□□□□ -1.48
HLCS-201ENST00000336648 LOC400499M0QZD8 3231 aa5.8□□□□□ -1.48
HLCS-201ENST00000336648 MT1HL1P0DM35 61 aa5.8□□□□□ -1.48
HLCS-201ENST00000336648 KRTAP3-3Q9BYR6 98 aa5.78□□□□□ -1.48
HLCS-201ENST00000336648 CELSR1Q9NYQ6 3014 aa5.75□□□□□ -1.49
HLCS-201ENST00000336648 KRTAP12-3P60328 96 aa5.74□□□□□ -1.49
HLCS-201ENST00000336648 SMG1Q96Q15 3661 aaKnown RBP5.74□□□□□ -1.49
HLCS-201ENST00000336648 MXRA5Q9NR99 2828 aa5.73□□□□□ -1.49
HLCS-201ENST00000336648 FBN2P35556 2912 aa5.72□□□□□ -1.49
HLCS-201ENST00000336648 PKD1L1Q8TDX9 2849 aa5.64□□□□□ -1.51
HLCS-201ENST00000336648 KRTAP10-5P60370 271 aa5.61□□□□□ -1.51
HLCS-201ENST00000336648 LCE3AQ5TA76 89 aa5.58□□□□□ -1.52
HLCS-201ENST00000336648 KRTAP10-4P60372 401 aaPredicted RBP5.58□□□□□ -1.52
HLCS-201ENST00000336648 RELNP78509 3460 aa5.57□□□□□ -1.52
HLCS-201ENST00000336648 VWFP04275 2813 aa5.57□□□□□ -1.52
HLCS-201ENST00000336648 CSMD1Q96PZ7 3565 aa5.51□□□□□ -1.53
HLCS-201ENST00000336648 NBPF19A0A087WUL8 3843 aa5.49□□□□□ -1.53
HLCS-201ENST00000336648 VPS13CQ709C8 3753 aa5.49□□□□□ -1.53
HLCS-201ENST00000336648 FBN3Q75N90 2809 aa5.46□□□□□ -1.53
HLCS-201ENST00000336648 MEGF8Q7Z7M0 2845 aa5.42□□□□□ -1.54
HLCS-201ENST00000336648 CSMD2Q7Z408 3487 aa5.39□□□□□ -1.55
HLCS-201ENST00000336648 KRTAP8-1Q8IUC2 63 aa5.39□□□□□ -1.55
HLCS-201ENST00000336648 ZFHX3Q15911 3703 aa5.36□□□□□ -1.55
HLCS-201ENST00000336648 AKAP9Q99996 3911 aa5.36□□□□□ -1.55
HLCS-201ENST00000336648 KRTAP4-5Q9BYR2 181 aa5.35□□□□□ -1.55
HLCS-201ENST00000336648 ZNF469Q96JG9 3925 aaPredicted RBP5.35□□□□□ -1.55
HLCS-201ENST00000336648 LORP23490 312 aaPredicted RBP5.33□□□□□ -1.56
HLCS-201ENST00000336648 SRRM2Q9UQ35 2752 aaKnown RBP5.31□□□□□ -1.56
HLCS-201ENST00000336648 HUWE1Q7Z6Z7 4374 aaKnown RBP5.3□□□□□ -1.56
HLCS-201ENST00000336648 SVEP1Q4LDE5 3571 aa5.29□□□□□ -1.56
HLCS-201ENST00000336648 CUBNO60494 3623 aa5.23□□□□□ -1.57
HLCS-201ENST00000336648 ANK3Q12955 4377 aaKnown RBP5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms