RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 TENM3Q9P273 2699 aa6.16□□□□□ -1.42
PTPN4-201ENST00000263708 RANBP2P49792 3224 aaKnown RBP6.16□□□□□ -1.42
PTPN4-201ENST00000263708 TACC2O95359 2948 aa6.15□□□□□ -1.42
PTPN4-201ENST00000263708 NIPBLQ6KC79 2804 aaeCLIP6.15□□□□□ -1.43
PTPN4-201ENST00000263708 ASH1LQ9NR48 2969 aaKnown RBP6.14□□□□□ -1.43
PTPN4-201ENST00000263708 VPS13AQ96RL7 3174 aa6.12□□□□□ -1.43
PTPN4-201ENST00000263708 WDFY4Q6ZS81 3184 aa6.12□□□□□ -1.43
PTPN4-201ENST00000263708 REV3LO60673 3130 aa6.12□□□□□ -1.43
PTPN4-201ENST00000263708 CELSR3Q9NYQ7 3312 aa6.11□□□□□ -1.43
PTPN4-201ENST00000263708 MKI67P46013 3256 aaKnown RBP6.09□□□□□ -1.43
PTPN4-201ENST00000263708 ZZEF1O43149 2961 aa6.09□□□□□ -1.43
PTPN4-201ENST00000263708 NBEAQ8NFP9 2946 aa6.09□□□□□ -1.43
PTPN4-201ENST00000263708 TNRC18O15417 2968 aaPredicted RBP6.07□□□□□ -1.44
PTPN4-201ENST00000263708 HRNRQ86YZ3 2850 aaPredicted RBP6.07□□□□□ -1.44
PTPN4-201ENST00000263708 KRTAP7-1Q8IUC3 87 aa6.06□□□□□ -1.44
PTPN4-201ENST00000263708 TENM4Q6N022 2769 aa6.06□□□□□ -1.44
PTPN4-201ENST00000263708 XP32Q5T750 250 aa6.05□□□□□ -1.44
PTPN4-201ENST00000263708 KRTAP13-1Q8IUC0 172 aa6.05□□□□□ -1.44
PTPN4-201ENST00000263708 VWFP04275 2813 aa6.03□□□□□ -1.44
PTPN4-201ENST00000263708 DCHS2Q6V1P9 2916 aa6.01□□□□□ -1.45
PTPN4-201ENST00000263708 H0YAA0 97 aa6□□□□□ -1.45
PTPN4-201ENST00000263708 HTTP42858 3142 aa6□□□□□ -1.45
PTPN4-201ENST00000263708 FBN2P35556 2912 aa5.98□□□□□ -1.45
PTPN4-201ENST00000263708 DMXL2Q8TDJ6 3036 aa5.97□□□□□ -1.45
PTPN4-201ENST00000263708 BRCA2P51587 3418 aa5.93□□□□□ -1.46
PTPN4-201ENST00000263708 PKD1L1Q8TDX9 2849 aa5.92□□□□□ -1.46
PTPN4-201ENST00000263708 TGP01266 2768 aa5.92□□□□□ -1.46
PTPN4-201ENST00000263708 UNC80Q8N2C7 3258 aa5.92□□□□□ -1.46
PTPN4-201ENST00000263708 TPRXLQ17RH7 258 aa5.91□□□□□ -1.46
PTPN4-201ENST00000263708 COL12A1Q99715 3063 aa5.9□□□□□ -1.46
PTPN4-201ENST00000263708 LAMA3Q16787 3333 aa5.89□□□□□ -1.47
PTPN4-201ENST00000263708 MXRA5Q9NR99 2828 aa5.89□□□□□ -1.47
PTPN4-201ENST00000263708 LAMA1P25391 3075 aa5.87□□□□□ -1.47
PTPN4-201ENST00000263708 DNAH14Q0VDD8 3507 aa5.86□□□□□ -1.47
PTPN4-201ENST00000263708 PDZD2O15018 2839 aa5.86□□□□□ -1.47
PTPN4-201ENST00000263708 USP34Q70CQ2 3546 aa5.83□□□□□ -1.48
PTPN4-201ENST00000263708 CFAP47Q6ZTR5 3102 aa5.82□□□□□ -1.48
PTPN4-201ENST00000263708 BOD1L1Q8NFC6 3051 aa5.82□□□□□ -1.48
PTPN4-201ENST00000263708 ATMQ13315 3056 aa5.82□□□□□ -1.48
PTPN4-201ENST00000263708 KRTAP12-2P59991 146 aa5.81□□□□□ -1.48
PTPN4-201ENST00000263708 COL6A3P12111 3177 aa5.81□□□□□ -1.48
PTPN4-201ENST00000263708 SPTBN5Q9NRC6 3674 aaKnown RBP5.81□□□□□ -1.48
PTPN4-201ENST00000263708 KRTAP1-4P0C5Y4 121 aa5.79□□□□□ -1.48
PTPN4-201ENST00000263708 VCANP13611 3396 aa5.77□□□□□ -1.49
PTPN4-201ENST00000263708 SPEGQ15772 3267 aa5.76□□□□□ -1.49
PTPN4-201ENST00000263708 KRTAP21-3Q3LHN1 58 aa5.73□□□□□ -1.49
PTPN4-201ENST00000263708 KRTAP13-3Q3SY46 172 aa5.73□□□□□ -1.49
PTPN4-201ENST00000263708 SRRM2Q9UQ35 2752 aaKnown RBP5.72□□□□□ -1.49
PTPN4-201ENST00000263708 TENM2Q9NT68 2774 aa5.71□□□□□ -1.49
PTPN4-201ENST00000263708 CDH23Q9H251 3354 aa5.7□□□□□ -1.5
PTPN4-201ENST00000263708 KRTAP15-1Q3LI76 137 aa5.69□□□□□ -1.5
PTPN4-201ENST00000263708 ADGRG4Q8IZF6 3080 aa5.65□□□□□ -1.5
PTPN4-201ENST00000263708 KRTAP13-4Q3LI77 160 aa5.64□□□□□ -1.51
PTPN4-201ENST00000263708 SZT2Q5T011 3432 aa5.62□□□□□ -1.51
PTPN4-201ENST00000263708 CELSR1Q9NYQ6 3014 aa5.61□□□□□ -1.51
PTPN4-201ENST00000263708 DMXL1Q9Y485 3027 aa5.6□□□□□ -1.51
PTPN4-201ENST00000263708 CRCT1Q9UGL9 99 aa5.59□□□□□ -1.51
PTPN4-201ENST00000263708 DMDP11532 3685 aa5.55□□□□□ -1.52
PTPN4-201ENST00000263708 ZFHX4Q86UP3 3567 aa5.53□□□□□ -1.52
PTPN4-201ENST00000263708 NBPF19A0A087WUL8 3843 aa5.52□□□□□ -1.53
PTPN4-201ENST00000263708 FBN1P35555 2871 aaKnown RBP5.5□□□□□ -1.53
PTPN4-201ENST00000263708 KRTAP12-1P59990 96 aa5.48□□□□□ -1.53
PTPN4-201ENST00000263708 COL7A1Q02388 2944 aa5.45□□□□□ -1.54
PTPN4-201ENST00000263708 MYO15AQ9UKN7 3530 aa5.42□□□□□ -1.54
PTPN4-201ENST00000263708 ASPMQ8IZT6 3477 aa5.42□□□□□ -1.54
PTPN4-201ENST00000263708 EYSQ5T1H1 3165 aa5.42□□□□□ -1.54
PTPN4-201ENST00000263708 WDFY3Q8IZQ1 3526 aa5.39□□□□□ -1.55
PTPN4-201ENST00000263708 LOC400499M0QZD8 3231 aa5.36□□□□□ -1.55
PTPN4-201ENST00000263708 ZFHX3Q15911 3703 aa5.36□□□□□ -1.55
PTPN4-201ENST00000263708 MEGF8Q7Z7M0 2845 aa5.35□□□□□ -1.55
PTPN4-201ENST00000263708 SPENQ96T58 3664 aaKnown RBP5.34□□□□□ -1.55
PTPN4-201ENST00000263708 INE1O15225 51 aa5.34□□□□□ -1.56
PTPN4-201ENST00000263708 FBN3Q75N90 2809 aa5.32□□□□□ -1.56
PTPN4-201ENST00000263708 SMG1Q96Q15 3661 aaKnown RBP5.32□□□□□ -1.56
PTPN4-201ENST00000263708 KRTAP10-12P60413 245 aa5.28□□□□□ -1.56
PTPN4-201ENST00000263708 LAMA5O15230 3695 aa5.25□□□□□ -1.57
PTPN4-201ENST00000263708 VPS13CQ709C8 3753 aa5.24□□□□□ -1.57
PTPN4-201ENST00000263708 DCHS1Q96JQ0 3298 aa5.2□□□□□ -1.58
PTPN4-201ENST00000263708 KRTAP3-1Q9BYR8 98 aa5.16□□□□□ -1.58
PTPN4-201ENST00000263708 TRRAPQ9Y4A5 3859 aa5.14□□□□□ -1.59
PTPN4-201ENST00000263708 AKAP9Q99996 3911 aa5.13□□□□□ -1.59
PTPN4-201ENST00000263708 CSMD1Q96PZ7 3565 aa5.13□□□□□ -1.59
PTPN4-201ENST00000263708 OTOGQ6ZRI0 2925 aa5.12□□□□□ -1.59
PTPN4-201ENST00000263708 KRTAP10-6P60371 365 aaPredicted RBP5.11□□□□□ -1.59
PTPN4-201ENST00000263708 KRTAP10-5P60370 271 aa5.09□□□□□ -1.59
PTPN4-201ENST00000263708 KRTAP12-3P60328 96 aa5.06□□□□□ -1.6
PTPN4-201ENST00000263708 RELNP78509 3460 aa5.06□□□□□ -1.6
PTPN4-201ENST00000263708 LCE3AQ5TA76 89 aa4.97□□□□□ -1.61
PTPN4-201ENST00000263708 KRTAP8-1Q8IUC2 63 aa4.93□□□□□ -1.62
PTPN4-201ENST00000263708 LORP23490 312 aaPredicted RBP4.9□□□□□ -1.62
PTPN4-201ENST00000263708 ALMS1Q8TCU4 4167 aa4.84□□□□□ -1.63
PTPN4-201ENST00000263708 BSNQ9UPA5 3926 aa4.83□□□□□ -1.64
PTPN4-201ENST00000263708 KRTAP3-3Q9BYR6 98 aa4.81□□□□□ -1.64
PTPN4-201ENST00000263708 KRTAP3-2Q9BYR7 98 aa4.8□□□□□ -1.64
PTPN4-201ENST00000263708 CUBNO60494 3623 aa4.8□□□□□ -1.64
PTPN4-201ENST00000263708 CSMD3Q7Z407 3707 aa4.79□□□□□ -1.64
PTPN4-201ENST00000263708 SVEP1Q4LDE5 3571 aa4.79□□□□□ -1.64
PTPN4-201ENST00000263708 MUC3AQ02505 3323 aa4.79□□□□□ -1.64
PTPN4-201ENST00000263708 MT1HL1P0DM35 61 aa4.78□□□□□ -1.64
PTPN4-201ENST00000263708 LYSTQ99698 3801 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms