RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 COL5A1-AS1Q5SY13 56 aa-0.47□□□□□ -2.48
SCFD1-216ENST00000555550 PREX1Q8TCU6 1659 aa-0.47□□□□□ -2.48
SCFD1-216ENST00000555550 ANK3Q12955 4377 aaKnown RBP-0.47□□□□□ -2.49
SCFD1-216ENST00000555550 RANBP2P49792 3224 aaKnown RBP-0.48□□□□□ -2.49
SCFD1-216ENST00000555550 CICQ96RK0 1608 aaPredicted RBP-0.48□□□□□ -2.49
SCFD1-216ENST00000555550 ETDBQ3ZM63 59 aa-0.48□□□□□ -2.49
SCFD1-216ENST00000555550 POLR1AO95602 1720 aaPredicted RBP-0.48□□□□□ -2.49
SCFD1-216ENST00000555550 WDFY3Q8IZQ1 3526 aa-0.48□□□□□ -2.49
SCFD1-216ENST00000555550 NBASA2RRP1 2371 aa-0.48□□□□□ -2.49
SCFD1-216ENST00000555550 BRCA2P51587 3418 aa-0.48□□□□□ -2.49
SCFD1-216ENST00000555550 PKD1L3Q7Z443 1732 aa-0.49□□□□□ -2.49
SCFD1-216ENST00000555550 HMGN2P05204 90 aaKnown RBP-0.49□□□□□ -2.49
SCFD1-216ENST00000555550 FAUP35544 74 aaKnown RBP-0.49□□□□□ -2.49
SCFD1-216ENST00000555550 NMSQ5H8A3 153 aa-0.49□□□□□ -2.49
SCFD1-216ENST00000555550 ALKAL2Q6UX46 152 aa-0.49□□□□□ -2.49
SCFD1-216ENST00000555550 VAMP8Q9BV40 100 aa-0.49□□□□□ -2.49
SCFD1-216ENST00000555550 CCDC141Q6ZP82 1450 aa-0.49□□□□□ -2.49
SCFD1-216ENST00000555550 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.49□□□□□ -2.49
SCFD1-216ENST00000555550 WIZO95785 1651 aa-0.49□□□□□ -2.49
SCFD1-216ENST00000555550 DOT1LQ8TEK3 1739 aa-0.5□□□□□ -2.49
SCFD1-216ENST00000555550 BCORQ6W2J9 1755 aa-0.5□□□□□ -2.49
SCFD1-216ENST00000555550 FRYQ5TBA9 3013 aa-0.5□□□□□ -2.49
SCFD1-216ENST00000555550 TDRG1Q3Y452 100 aa-0.5□□□□□ -2.49
SCFD1-216ENST00000555550 C9orf62Q8N4C0 152 aa-0.5□□□□□ -2.49
SCFD1-216ENST00000555550 AP4S1Q9Y587 144 aa-0.5□□□□□ -2.49
SCFD1-216ENST00000555550 ZZEF1O43149 2961 aa-0.5□□□□□ -2.49
SCFD1-216ENST00000555550 DMXL1Q9Y485 3027 aa-0.5□□□□□ -2.49
SCFD1-216ENST00000555550 LRRC7Q96NW7 1537 aa-0.5□□□□□ -2.49
SCFD1-216ENST00000555550 UQCRHLA0A096LP55 91 aa-0.51□□□□□ -2.49
SCFD1-216ENST00000555550 D6R8Y8 96 aa-0.51□□□□□ -2.49
SCFD1-216ENST00000555550 I3L3M4 83 aa-0.51□□□□□ -2.49
SCFD1-216ENST00000555550 ABCC3O15438 1527 aa-0.51□□□□□ -2.49
SCFD1-216ENST00000555550 GYPAP02724 150 aa-0.51□□□□□ -2.49
SCFD1-216ENST00000555550 HTTP42858 3142 aa-0.51□□□□□ -2.49
SCFD1-216ENST00000555550 GNGT1P63211 74 aa-0.51□□□□□ -2.49
SCFD1-216ENST00000555550 DEFB135Q30KP9 77 aa-0.51□□□□□ -2.49
SCFD1-216ENST00000555550 MUC17Q685J3 4493 aa-0.51□□□□□ -2.49
SCFD1-216ENST00000555550 SUPT6HQ7KZ85 1726 aaKnown RBP-0.51□□□□□ -2.49
SCFD1-216ENST00000555550 MUSTN1Q8IVN3 82 aa-0.51□□□□□ -2.49
SCFD1-216ENST00000555550 SACSQ9NZJ4 4579 aa-0.51□□□□□ -2.49
SCFD1-216ENST00000555550 KIF20BQ96Q89 1820 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 RGPD4Q7Z3J3 1758 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 MED14O60244 1454 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 CLIP1P30622 1438 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 IQCF6A8MYZ5 107 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 LEPROTL1O95214 131 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 MT1AP04731 61 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 COX7BP24311 80 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 WFDC13Q8IUB5 93 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 FXYD6Q9H0Q3 95 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 RGPD3A6NKT7 1758 aaPredicted RBP-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 PPLO60437 1756 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 COL14A1Q05707 1796 aaKnown RBP-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 C4AP0C0L4 1744 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 C4BP0C0L5 1744 aa-0.52□□□□□ -2.49
SCFD1-216ENST00000555550 CENPFP49454 3210 aa-0.53□□□□□ -2.49
SCFD1-216ENST00000555550 UTRNP46939 3433 aa-0.53□□□□□ -2.49
SCFD1-216ENST00000555550 K7EP34 96 aa-0.53□□□□□ -2.49
SCFD1-216ENST00000555550 CCL22O00626 93 aa-0.53□□□□□ -2.49
SCFD1-216ENST00000555550 KRTAP19-8Q3LI54 63 aa-0.53□□□□□ -2.49
SCFD1-216ENST00000555550 ZNF720Q7Z2F6 126 aa-0.53□□□□□ -2.49
SCFD1-216ENST00000555550 SPRR2FQ96RM1 72 aa-0.53□□□□□ -2.49
SCFD1-216ENST00000555550 RGPD8O14715 1765 aaPredicted RBP-0.53□□□□□ -2.49
SCFD1-216ENST00000555550 RGPD5Q99666 1765 aa-0.53□□□□□ -2.49
SCFD1-216ENST00000555550 TIAM2Q8IVF5 1701 aa-0.53□□□□□ -2.49
SCFD1-216ENST00000555550 PLXNC1O60486 1568 aa-0.53□□□□□ -2.49
SCFD1-216ENST00000555550 DIP2BQ9P265 1576 aa-0.53□□□□□ -2.49
SCFD1-216ENST00000555550 MAGI3Q5TCQ9 1506 aa-0.54□□□□□ -2.5
SCFD1-216ENST00000555550 LRRC9Q6ZRR7 1453 aa-0.54□□□□□ -2.5
SCFD1-216ENST00000555550 ASPMQ8IZT6 3477 aa-0.54□□□□□ -2.5
SCFD1-216ENST00000555550 SPTY2D1-AS1A0A0U1RR47 76 aa-0.54□□□□□ -2.5
SCFD1-216ENST00000555550 LCE6AA0A183 80 aa-0.54□□□□□ -2.5
SCFD1-216ENST00000555550 PLECQ15149 4684 aaKnown RBP-0.54□□□□□ -2.5
SCFD1-216ENST00000555550 PYY3Q5JQD4 70 aa-0.54□□□□□ -2.5
SCFD1-216ENST00000555550 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.54□□□□□ -2.5
SCFD1-216ENST00000555550 DNAH11Q96DT5 4516 aa-0.55□□□□□ -2.5
SCFD1-216ENST00000555550 PLIN4Q96Q06 1357 aa-0.55□□□□□ -2.5
SCFD1-216ENST00000555550 KIF14Q15058 1648 aa-0.55□□□□□ -2.5
SCFD1-216ENST00000555550 USP34Q70CQ2 3546 aa-0.55□□□□□ -2.5
SCFD1-216ENST00000555550 TRAV21A0A0B4J279 112 aa-0.55□□□□□ -2.5
SCFD1-216ENST00000555550 LOC730098B7Z3J9 87 aa-0.55□□□□□ -2.5
SCFD1-216ENST00000555550 NDUFA3O95167 84 aa-0.55□□□□□ -2.5
SCFD1-216ENST00000555550 COX6B2Q6YFQ2 88 aa-0.55□□□□□ -2.5
SCFD1-216ENST00000555550 RABAC1Q9UI14 185 aa-0.55□□□□□ -2.5
SCFD1-216ENST00000555550 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.55□□□□□ -2.5
SCFD1-216ENST00000555550 SCN11AQ9UI33 1791 aa-0.55□□□□□ -2.5
SCFD1-216ENST00000555550 NCOA2Q15596 1464 aa-0.55□□□□□ -2.5
SCFD1-216ENST00000555550 TRIOO75962 3097 aa-0.56□□□□□ -2.5
SCFD1-216ENST00000555550 FRYLO94915 3013 aa-0.56□□□□□ -2.5
SCFD1-216ENST00000555550 DNAH5Q8TE73 4624 aa-0.56□□□□□ -2.5
SCFD1-216ENST00000555550 NESP48681 1621 aa-0.56□□□□□ -2.5
SCFD1-216ENST00000555550 MAP3K4Q9Y6R4 1608 aa-0.56□□□□□ -2.5
SCFD1-216ENST00000555550 NWD1Q149M9 1564 aa-0.56□□□□□ -2.5
SCFD1-216ENST00000555550 MYMXA0A1B0GTQ4 84 aa-0.56□□□□□ -2.5
SCFD1-216ENST00000555550 H0YAA0 97 aa-0.56□□□□□ -2.5
SCFD1-216ENST00000555550 CDKN2A-AS1Q9UH64 79 aa-0.56□□□□□ -2.5
SCFD1-216ENST00000555550 LTN1O94822 1766 aa-0.56□□□□□ -2.5
SCFD1-216ENST00000555550 CD163L1Q9NR16 1453 aa-0.56□□□□□ -2.5
SCFD1-216ENST00000555550 A0A1B0GUT8 65 aa-0.57□□□□□ -2.5
SCFD1-216ENST00000555550 HMGA1P17096 107 aaKnown RBP-0.57□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms