RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	POLQ	O75417	2590 aa		5.23	□□□□□ -1.57
YBX3-208	ENST00000540447	PLAC4	Q8WY50	150 aa		5.23	□□□□□ -1.57
YBX3-208	ENST00000540447	USP9Y	O00507	2555 aa	Predicted RBP	5.21	□□□□□ -1.57
YBX3-208	ENST00000540447		R4GN34	69 aa		5.21	□□□□□ -1.58
YBX3-208	ENST00000540447	HTT	P42858	3142 aa		5.21	□□□□□ -1.58
YBX3-208	ENST00000540447	UNC80	Q8N2C7	3258 aa		5.2	□□□□□ -1.58
YBX3-208	ENST00000540447	JMJD1C	Q15652	2540 aa		5.2	□□□□□ -1.58
YBX3-208	ENST00000540447	KRTAP11-1	Q8IUC1	163 aa		5.2	□□□□□ -1.58
YBX3-208	ENST00000540447	CHD8	Q9HCK8	2581 aa		5.19	□□□□□ -1.58
YBX3-208	ENST00000540447	IGF2R	P11717	2491 aa		5.18	□□□□□ -1.58
YBX3-208	ENST00000540447	MTOR	P42345	2549 aa		5.18	□□□□□ -1.58
YBX3-208	ENST00000540447	KRTAP10-11	P60412	298 aa		5.16	□□□□□ -1.58
YBX3-208	ENST00000540447	CDH23	Q9H251	3354 aa		5.16	□□□□□ -1.58
YBX3-208	ENST00000540447	VCAN	P13611	3396 aa		5.16	□□□□□ -1.58
YBX3-208	ENST00000540447	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	5.15	□□□□□ -1.58
YBX3-208	ENST00000540447	C5orf42	Q9H799	3197 aa		5.15	□□□□□ -1.58
YBX3-208	ENST00000540447	ZFYVE26	Q68DK2	2539 aa		5.14	□□□□□ -1.59
YBX3-208	ENST00000540447		M0QZ58	72 aa		5.13	□□□□□ -1.59
YBX3-208	ENST00000540447	WWC2-AS2	Q96NR7	200 aa		5.13	□□□□□ -1.59
YBX3-208	ENST00000540447		Q6ZSA8	131 aa		5.13	□□□□□ -1.59
YBX3-208	ENST00000540447	NOTCH2NL	Q7Z3S9	236 aa		5.12	□□□□□ -1.59
YBX3-208	ENST00000540447	SZT2	Q5T011	3432 aa		5.12	□□□□□ -1.59
YBX3-208	ENST00000540447	SMR3B	P02814	79 aa	Predicted RBP	5.11	□□□□□ -1.59
YBX3-208	ENST00000540447	KRTAP10-3	P60369	221 aa		5.11	□□□□□ -1.59
YBX3-208	ENST00000540447	XIRP2	A4UGR9	3374 aa		5.11	□□□□□ -1.59
YBX3-208	ENST00000540447	ANKRD17	O75179	2603 aa	Known RBP	5.1	□□□□□ -1.59
YBX3-208	ENST00000540447	KRTAP24-1	Q3LI83	254 aa		5.08	□□□□□ -1.6
YBX3-208	ENST00000540447	PLAC8	Q9NZF1	115 aa		5.07	□□□□□ -1.6
YBX3-208	ENST00000540447	DMBT1	Q9UGM3	2413 aa	Predicted RBP	5.06	□□□□□ -1.6
YBX3-208	ENST00000540447	BPTF	Q12830	3046 aa		5.05	□□□□□ -1.6
YBX3-208	ENST00000540447	EYS	Q5T1H1	3165 aa		5.05	□□□□□ -1.6
YBX3-208	ENST00000540447	SPTBN4	Q9H254	2564 aa		5.04	□□□□□ -1.6
YBX3-208	ENST00000540447	CHD7	Q9P2D1	2997 aa		5.03	□□□□□ -1.6
YBX3-208	ENST00000540447	C10orf95	Q9H7T3	257 aa		5.03	□□□□□ -1.6
YBX3-208	ENST00000540447	TRIO	O75962	3097 aa		5.01	□□□□□ -1.61
YBX3-208	ENST00000540447	COL6A3	P12111	3177 aa		4.99	□□□□□ -1.61
YBX3-208	ENST00000540447		P0C880	135 aa		4.98	□□□□□ -1.61
YBX3-208	ENST00000540447		J3QL48	77 aa		4.97	□□□□□ -1.61
YBX3-208	ENST00000540447	PIEZO1	Q92508	2521 aa		4.97	□□□□□ -1.61
YBX3-208	ENST00000540447	ANKRD11	Q6UB99	2663 aa	Predicted RBP	4.95	□□□□□ -1.62
YBX3-208	ENST00000540447		H0YAA0	97 aa		4.95	□□□□□ -1.62
YBX3-208	ENST00000540447	VPS13A	Q96RL7	3174 aa		4.93	□□□□□ -1.62
YBX3-208	ENST00000540447	FASN	P49327	2511 aa	Known RBP	4.92	□□□□□ -1.62
YBX3-208	ENST00000540447	CEP295	Q9C0D2	2601 aa		4.92	□□□□□ -1.62
YBX3-208	ENST00000540447	EPG5	Q9HCE0	2579 aa		4.91	□□□□□ -1.62
YBX3-208	ENST00000540447	WDFY4	Q6ZS81	3184 aa		4.9	□□□□□ -1.62
YBX3-208	ENST00000540447	KRTAP1-5	Q9BYS1	174 aa		4.89	□□□□□ -1.63
YBX3-208	ENST00000540447	PRRC2C	Q9Y520	2896 aa	Known RBP	4.89	□□□□□ -1.63
YBX3-208	ENST00000540447	SPEG	Q15772	3267 aa		4.89	□□□□□ -1.63
YBX3-208	ENST00000540447	CHD9	Q3L8U1	2897 aa		4.89	□□□□□ -1.63
YBX3-208	ENST00000540447	USP24	Q9UPU5	2620 aa		4.89	□□□□□ -1.63
YBX3-208	ENST00000540447	PP632	Q6XCG6	107 aa		4.88	□□□□□ -1.63
YBX3-208	ENST00000540447	CELSR3	Q9NYQ7	3312 aa		4.88	□□□□□ -1.63
YBX3-208	ENST00000540447	KRTAP7-1	Q8IUC3	87 aa		4.86	□□□□□ -1.63
YBX3-208	ENST00000540447	DNAH14	Q0VDD8	3507 aa		4.85	□□□□□ -1.63
YBX3-208	ENST00000540447		M0R2T5	61 aa		4.85	□□□□□ -1.63
YBX3-208	ENST00000540447	TNP1	P09430	55 aa		4.84	□□□□□ -1.64
YBX3-208	ENST00000540447	MYO15A	Q9UKN7	3530 aa		4.84	□□□□□ -1.64
YBX3-208	ENST00000540447	KRTAP1-3	Q8IUG1	177 aa		4.81	□□□□□ -1.64
YBX3-208	ENST00000540447	KRTAP10-8	P60410	259 aa		4.8	□□□□□ -1.64
YBX3-208	ENST00000540447	SPTBN5	Q9NRC6	3674 aa	Known RBP	4.8	□□□□□ -1.64
YBX3-208	ENST00000540447	KRTAP1-1	Q07627	177 aa		4.79	□□□□□ -1.64
YBX3-208	ENST00000540447	MUC3A	Q02505	3323 aa		4.79	□□□□□ -1.64
YBX3-208	ENST00000540447	CENPE	Q02224	2701 aa		4.79	□□□□□ -1.64
YBX3-208	ENST00000540447	CFAP54	Q96N23	3096 aa		4.78	□□□□□ -1.64
YBX3-208	ENST00000540447	FRYL	O94915	3013 aa		4.78	□□□□□ -1.64
YBX3-208	ENST00000540447	LAMA1	P25391	3075 aa		4.78	□□□□□ -1.64
YBX3-208	ENST00000540447	KRTAP13-1	Q8IUC0	172 aa		4.77	□□□□□ -1.65
YBX3-208	ENST00000540447	REV3L	O60673	3130 aa		4.76	□□□□□ -1.65
YBX3-208	ENST00000540447	NBEAL1	Q6ZS30	2694 aa		4.76	□□□□□ -1.65
YBX3-208	ENST00000540447	AKAP13	Q12802	2813 aa		4.74	□□□□□ -1.65
YBX3-208	ENST00000540447	TRANK1	O15050	2925 aa		4.74	□□□□□ -1.65
YBX3-208	ENST00000540447	RPS29	P62273	56 aa	Known RBP	4.74	□□□□□ -1.65
YBX3-208	ENST00000540447	FREM2	Q5SZK8	3169 aa		4.73	□□□□□ -1.65
YBX3-208	ENST00000540447	UNC79	Q9P2D8	2635 aa		4.72	□□□□□ -1.65
YBX3-208	ENST00000540447	USP34	Q70CQ2	3546 aa		4.72	□□□□□ -1.65
YBX3-208	ENST00000540447	KRTAP10-1	P60331	282 aa		4.72	□□□□□ -1.65
YBX3-208	ENST00000540447	MGAM2	Q2M2H8	2515 aa		4.7	□□□□□ -1.66
YBX3-208	ENST00000540447	TNRC18	O15417	2968 aa	Predicted RBP	4.7	□□□□□ -1.66
YBX3-208	ENST00000540447	KRTAP13-2	Q52LG2	175 aa		4.7	□□□□□ -1.66
YBX3-208	ENST00000540447	KRTAP10-2	P60368	255 aa		4.69	□□□□□ -1.66
YBX3-208	ENST00000540447	CHD6	Q8TD26	2715 aa		4.68	□□□□□ -1.66
YBX3-208	ENST00000540447	TPRXL	Q17RH7	258 aa		4.67	□□□□□ -1.66
YBX3-208	ENST00000540447	GCN1	Q92616	2671 aa	Known RBP	4.66	□□□□□ -1.66
YBX3-208	ENST00000540447		Q6ZRN7	208 aa	Predicted RBP	4.66	□□□□□ -1.66
YBX3-208	ENST00000540447	FLNB	O75369	2602 aa	Known RBP	4.66	□□□□□ -1.66
YBX3-208	ENST00000540447	HELZ2	Q9BYK8	2649 aa	Known RBP	4.66	□□□□□ -1.66
YBX3-208	ENST00000540447	STAB2	Q8WWQ8	2551 aa		4.65	□□□□□ -1.66
YBX3-208	ENST00000540447	MGA	Q8IWI9	3026 aa		4.65	□□□□□ -1.66
YBX3-208	ENST00000540447	DSP	P15924	2871 aa	Known RBP	4.61	□□□□□ -1.67
YBX3-208	ENST00000540447	ATR	Q13535	2644 aa		4.61	□□□□□ -1.67
YBX3-208	ENST00000540447	NOTCH1	P46531	2555 aa		4.61	□□□□□ -1.67
YBX3-208	ENST00000540447	FLNA	P21333	2647 aa	Known RBP	4.6	□□□□□ -1.67
YBX3-208	ENST00000540447	ASPM	Q8IZT6	3477 aa		4.6	□□□□□ -1.67
YBX3-208	ENST00000540447	BOD1L1	Q8NFC6	3051 aa		4.6	□□□□□ -1.67
YBX3-208	ENST00000540447	FRY	Q5TBA9	3013 aa		4.6	□□□□□ -1.67
YBX3-208	ENST00000540447	DMD	P11532	3685 aa		4.59	□□□□□ -1.67
YBX3-208	ENST00000540447	ITPR1	Q14643	2758 aa		4.58	□□□□□ -1.68
YBX3-208	ENST00000540447	NBEAL2	Q6ZNJ1	2754 aa		4.58	□□□□□ -1.68
YBX3-208	ENST00000540447	MAP1A	P78559	2803 aa	Predicted RBP	4.58	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms