RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, human

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGXB4-208	ENST00000498325	ESRG	Q1W209	222 aa		3.6	□□□□□ -1.83
HMGXB4-208	ENST00000498325	ETDB	Q3ZM63	59 aa		3.6	□□□□□ -1.83
HMGXB4-208	ENST00000498325	MAPKAPK5-AS1	Q8N8E1	139 aa		3.6	□□□□□ -1.83
HMGXB4-208	ENST00000498325	IGHV3-64	A0A075B6Q5	118 aa		3.59	□□□□□ -1.83
HMGXB4-208	ENST00000498325	CCL18	P55774	89 aa		3.59	□□□□□ -1.83
HMGXB4-208	ENST00000498325	REG3A	Q06141	175 aa		3.59	□□□□□ -1.83
HMGXB4-208	ENST00000498325	TEN1	Q86WV5	123 aa		3.59	□□□□□ -1.83
HMGXB4-208	ENST00000498325	LINC01561	Q8N1V8	128 aa		3.59	□□□□□ -1.83
HMGXB4-208	ENST00000498325	LINC00269	Q8N2A0	174 aa		3.59	□□□□□ -1.83
HMGXB4-208	ENST00000498325	TTTY13	Q9BZ97	58 aa		3.59	□□□□□ -1.83
HMGXB4-208	ENST00000498325	TRAV8-3	A0A0A6YYJ7	113 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	TRAV8-4	A0A0B4J246	113 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	IGHV3OR16-9	A0A0B4J2B5	98 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	IGLV5-39	A0A0G2JS06	123 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	SMIM1	B2RUZ4	78 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	CRP	P02741	224 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	SRSF9	Q13242	221 aa	Known RBP eCLIP	3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	CIRBP	Q14011	172 aa	Known RBP	3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	SFTA2	Q6UW10	78 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	CD164L2	Q6UWJ8	174 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	LINC01600	Q96MT4	127 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	SPANXD	Q9BXN6	97 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	NDUFA12	Q9UI09	145 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	KLK12	Q9UKR0	248 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325	PKD1	P98161	4303 aa		3.58	□□□□□ -1.84
HMGXB4-208	ENST00000498325		A0A087WZ39	114 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	COX7A2L	O14548	114 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	NDUFA1	O15239	70 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	TSPAN13	O95857	204 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	IGHV3-30	P01768	117 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	IGHV3-33	P01772	117 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	IGHV3-30-5	P0DP03	117 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	XCL1	P47992	114 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	TSPEAR-AS2	P59090	65 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	HERV-K104	P63124	156 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	MIA	Q16674	131 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	SERTAD4-AS1	Q5TG53	156 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	RNF213	Q63HN8	5207 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	CLPSL2	Q6UWE3	100 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	C5orf38	Q86SI9	138 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	COX7B2	Q8TF08	81 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	PRR34	Q9NV39	138 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	ERG28	Q9UKR5	140 aa		3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	KLK5	Q9Y337	293 aa	Predicted RBP	3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	APOB	P04114	4563 aa	Known RBP	3.57	□□□□□ -1.84
HMGXB4-208	ENST00000498325	DNAH17	Q9UFH2	4485 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325		A0A0J9YXY3	114 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	USP17L23	D6RBM5	183 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	TIMM17B	O60830	172 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	PRSS2	P07478	247 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	SCGB1C2	P0DMR2	95 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	PSMB2	P49721	201 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	C6orf226	Q5I0X4	101 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	LINC01556	Q5JQF7	62 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325		Q6Q795	121 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	WFDC10B	Q8IUB3	73 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	C10orf126	Q8N4M7	172 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	COPS9	Q8WXC6	57 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	UBE2W	Q96B02	151 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325		Q9H8V8	135 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	TOMM7	Q9P0U1	55 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	PRO1854	Q9UHT4	67 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	DMBT1	Q9UGM3	2413 aa	Predicted RBP	3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	MYCBP2	O75592	4640 aa		3.56	□□□□□ -1.84
HMGXB4-208	ENST00000498325	IGLV10-54	A0A075B6I4	117 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325		A0A0B4J2C4	111 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	LOC107984156	A0A0G2JMH3	177 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	NUPR2	A6NF83	97 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	DNAH10OS	P0CZ25	163 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	IFITM1	P13164	125 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	CXCL5	P42830	114 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	MEIG1	Q5JSS6	88 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	ENHO	Q6UWT2	76 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	ARL17A	Q8IVW1	177 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325		Q8IZM0	81 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	ANAPC13	Q9BS18	74 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	UPK3B	Q9BT76	320 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	SPANXC	Q9NY87	97 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	LINC00588	Q9Y4M8	146 aa		3.55	□□□□□ -1.84
HMGXB4-208	ENST00000498325	RPL13A	P40429	203 aa	Known RBP	3.54	□□□□□ -1.84
HMGXB4-208	ENST00000498325	GAGE2B	Q13066	116 aa		3.54	□□□□□ -1.84
HMGXB4-208	ENST00000498325	ATXN8	Q156A1	80 aa		3.54	□□□□□ -1.84
HMGXB4-208	ENST00000498325	GAGE2E	Q4V326	116 aa		3.54	□□□□□ -1.84
HMGXB4-208	ENST00000498325	MUSTN1	Q8IVN3	82 aa		3.54	□□□□□ -1.84
HMGXB4-208	ENST00000498325	UBE2DNL	Q8IWF7	75 aa		3.54	□□□□□ -1.84
HMGXB4-208	ENST00000498325	RMI2	Q96E14	147 aa		3.54	□□□□□ -1.84
HMGXB4-208	ENST00000498325	ZNF625	Q96I27	306 aa	Predicted RBP	3.54	□□□□□ -1.84
HMGXB4-208	ENST00000498325	GAGE2D	Q9UEU5	116 aa		3.54	□□□□□ -1.84
HMGXB4-208	ENST00000498325	APLN	Q9ULZ1	77 aa		3.54	□□□□□ -1.84
HMGXB4-208	ENST00000498325	IGKV2D-24	A0A075B6R9	120 aa		3.53	□□□□□ -1.84
HMGXB4-208	ENST00000498325		A0A087WYN8	130 aa		3.53	□□□□□ -1.84
HMGXB4-208	ENST00000498325	TRBV30	A0A0K0K1B3	111 aa		3.53	□□□□□ -1.84
HMGXB4-208	ENST00000498325	IBA57-AS1	B1ANH7	110 aa		3.53	□□□□□ -1.84
HMGXB4-208	ENST00000498325	SLC25A20	O43772	301 aa		3.53	□□□□□ -1.84
HMGXB4-208	ENST00000498325	SNCG	O76070	127 aa		3.53	□□□□□ -1.84
HMGXB4-208	ENST00000498325	TCL1B	O95988	128 aa		3.53	□□□□□ -1.84
HMGXB4-208	ENST00000498325	MT-ATP8	P03928	68 aa		3.53	□□□□□ -1.84
HMGXB4-208	ENST00000498325	CFC1B	P0CG36	223 aa		3.53	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms