RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-208ENST00000498325 AEBP2Q6ZN18 517 aaPredicted RBP25.96■■□□□ 1.75
HMGXB4-208ENST00000498325 CHIC1Q5VXU3 224 aa24.39■■□□□ 1.49
HMGXB4-208ENST00000498325 SENP3Q9H4L4 574 aaPredicted RBP22.23■■□□□ 1.15
HMGXB4-208ENST00000498325 PHF23Q9BUL5 403 aaPredicted RBP21.89■■□□□ 1.09
HMGXB4-208ENST00000498325 FOXD1Q16676 465 aa20.73■□□□□ 0.91
HMGXB4-208ENST00000498325 POTEDQ86YR6 584 aa19.54■□□□□ 0.72
HMGXB4-208ENST00000498325 MSH5O43196 834 aa19.53■□□□□ 0.72
HMGXB4-208ENST00000498325 PLPPR3Q6T4P5 718 aa19.38■□□□□ 0.69
HMGXB4-208ENST00000498325 PIAS4Q8N2W9 510 aaPredicted RBP19.33■□□□□ 0.68
HMGXB4-208ENST00000498325 PPP6R1Q9UPN7 881 aa19.16■□□□□ 0.66
HMGXB4-208ENST00000498325 ADRA2BP18089 450 aa19.1■□□□□ 0.65
HMGXB4-208ENST00000498325 MAPK8IP2Q13387 824 aaPredicted RBP17.62■□□□□ 0.41
HMGXB4-208ENST00000498325 DMRT2Q9Y5R5 561 aa17.57■□□□□ 0.4
HMGXB4-208ENST00000498325 SCAF1Q9H7N4 1312 aaKnown RBP17.5■□□□□ 0.39
HMGXB4-208ENST00000498325 CACNB1Q02641 598 aaPredicted RBP16.96■□□□□ 0.31
HMGXB4-208ENST00000498325 PPP4R3CPQ6ZMV5 832 aa16.94■□□□□ 0.3
HMGXB4-208ENST00000498325 DCAF8L1A6NGE4 600 aa16.91■□□□□ 0.3
HMGXB4-208ENST00000498325 HOXD11P31277 338 aaPredicted RBP16.8■□□□□ 0.28
HMGXB4-208ENST00000498325 CNKSR2Q8WXI2 1034 aa16.7■□□□□ 0.26
HMGXB4-208ENST00000498325 RNF39Q9H2S5 420 aa16.63■□□□□ 0.25
HMGXB4-208ENST00000498325 RNF216Q9NWF9 866 aaPredicted RBP16.61■□□□□ 0.25
HMGXB4-208ENST00000498325 C1QBPQ07021 282 aaKnown RBP16.38■□□□□ 0.21
HMGXB4-208ENST00000498325 DNAJC5BQ9UF47 199 aa16.27■□□□□ 0.2
HMGXB4-208ENST00000498325 NCBP3Q53F19 620 aaKnown RBP16.23■□□□□ 0.19
HMGXB4-208ENST00000498325 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.05■□□□□ 0.166e-6■■□□□ 12.2
HMGXB4-208ENST00000498325 NPM3O75607 178 aaKnown RBP15.96■□□□□ 0.15
HMGXB4-208ENST00000498325 U3KPZ7 1027 aaPredicted RBP15.64■□□□□ 0.09
HMGXB4-208ENST00000498325 CAPN15O75808 1086 aa15.53■□□□□ 0.08
HMGXB4-208ENST00000498325 SPINK5Q9NQ38 1064 aaPredicted RBP15.51■□□□□ 0.07
HMGXB4-208ENST00000498325 DSG3P32926 999 aa15.47■□□□□ 0.07
HMGXB4-208ENST00000498325 KCNA4P22459 653 aa15.41■□□□□ 0.06
HMGXB4-208ENST00000498325 SLC4A2P04920 1241 aa15.31■□□□□ 0.04
HMGXB4-208ENST00000498325 POTEHQ6S545 545 aa15.27■□□□□ 0.04
HMGXB4-208ENST00000498325 APLP2Q06481 763 aa15.23■□□□□ 0.03
HMGXB4-208ENST00000498325 TRHP20396 242 aaPredicted RBP15.22■□□□□ 0.03
HMGXB4-208ENST00000498325 ZNF219Q9P2Y4 722 aaPredicted RBP15.17■□□□□ 0.02
HMGXB4-208ENST00000498325 ABCB7O75027 752 aa15.14■□□□□ 0.01
HMGXB4-208ENST00000498325 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.13■□□□□ 0.01
HMGXB4-208ENST00000498325 HNRNPUL2Q1KMD3 747 aaKnown RBP15.13■□□□□ 0.01
HMGXB4-208ENST00000498325 SAMD1Q6SPF0 538 aaPredicted RBP15.02■□□□□ -0
HMGXB4-208ENST00000498325 RBM42Q9BTD8 480 aaKnown RBP14.8□□□□□ -0.04
HMGXB4-208ENST00000498325 MYCNP04198 464 aaPredicted RBP14.79□□□□□ -0.04
HMGXB4-208ENST00000498325 POLA2Q14181 598 aa14.73□□□□□ -0.05
HMGXB4-208ENST00000498325 CHRDL2Q6WN34 429 aa14.58□□□□□ -0.08
HMGXB4-208ENST00000498325 SLC4A1APQ9BWU0 796 aaKnown RBP14.5□□□□□ -0.09
HMGXB4-208ENST00000498325 FOXD4L1Q9NU39 408 aa14.47□□□□□ -0.09
HMGXB4-208ENST00000498325 ATF5Q9Y2D1 282 aaPredicted RBP14.44□□□□□ -0.1
HMGXB4-208ENST00000498325 ZBTB12Q9Y330 459 aaPredicted RBP14.42□□□□□ -0.1
HMGXB4-208ENST00000498325 AKT1S1Q96B36 256 aa14.39□□□□□ -0.11
HMGXB4-208ENST00000498325 OSCARQ8IYS5 282 aa14.26□□□□□ -0.13
HMGXB4-208ENST00000498325 REM2Q8IYK8 340 aaPredicted RBP14.25□□□□□ -0.13
HMGXB4-208ENST00000498325 SP7Q8TDD2 431 aaPredicted RBP14.18□□□□□ -0.14
HMGXB4-208ENST00000498325 PIP4P2Q8N4L2 257 aa14.17□□□□□ -0.14
HMGXB4-208ENST00000498325 ZBTB22O15209 634 aa14.13□□□□□ -0.15
HMGXB4-208ENST00000498325 PITPNM1O00562 1244 aa14.1□□□□□ -0.15
HMGXB4-208ENST00000498325 ATXN8OSP0DMR3 200 aa14.06□□□□□ -0.16
HMGXB4-208ENST00000498325 HAX1O00165 279 aa14.02□□□□□ -0.17
HMGXB4-208ENST00000498325 FXR2P51116 673 aaKnown RBP eCLIP14.02□□□□□ -0.17
HMGXB4-208ENST00000498325 FBLN2P98095 1184 aa13.95□□□□□ -0.18
HMGXB4-208ENST00000498325 SPDYE2BA6NHP3 402 aa13.94□□□□□ -0.18
HMGXB4-208ENST00000498325 SPDYE6P0CI01 402 aa13.94□□□□□ -0.18
HMGXB4-208ENST00000498325 SPDYE2Q495Y8 402 aa13.94□□□□□ -0.18
HMGXB4-208ENST00000498325 SPDYE1Q8NFV5 336 aaPredicted RBP13.78□□□□□ -0.2
HMGXB4-208ENST00000498325 CLEC11AQ9Y240 323 aa13.78□□□□□ -0.2
HMGXB4-208ENST00000498325 EVX2Q03828 476 aa13.77□□□□□ -0.21
HMGXB4-208ENST00000498325 MKRN4PQ13434 485 aaPredicted RBP13.76□□□□□ -0.21
HMGXB4-208ENST00000498325 PRKAR2AP13861 404 aaKnown RBP13.75□□□□□ -0.21
HMGXB4-208ENST00000498325 ZNF692Q9BU19 519 aaPredicted RBP13.74□□□□□ -0.21
HMGXB4-208ENST00000498325 SSUH2Q9Y2M2 353 aa13.69□□□□□ -0.22
HMGXB4-208ENST00000498325 C19orf67A6NJJ6 358 aa13.59□□□□□ -0.23
HMGXB4-208ENST00000498325 CHADLQ6NUI6 762 aa13.52□□□□□ -0.25
HMGXB4-208ENST00000498325 PABPN1Q86U42 306 aaKnown RBP eCLIP13.51□□□□□ -0.25
HMGXB4-208ENST00000498325 PRR29P0C7W0 189 aa13.5□□□□□ -0.25
HMGXB4-208ENST00000498325 GABBR2O75899 941 aa13.47□□□□□ -0.25
HMGXB4-208ENST00000498325 LHX8Q68G74 356 aa13.3□□□□□ -0.28
HMGXB4-208ENST00000498325 CD44P16070 742 aaKnown RBP13.29□□□□□ -0.28
HMGXB4-208ENST00000498325 FARP1Q9Y4F1 1045 aaPredicted RBP13.29□□□□□ -0.28
HMGXB4-208ENST00000498325 CSRNP3Q8WYN3 585 aa13.23□□□□□ -0.29
HMGXB4-208ENST00000498325 CLCN6P51797 869 aa13.17□□□□□ -0.3
HMGXB4-208ENST00000498325 POTEIP0CG38 1075 aa13.16□□□□□ -0.3
HMGXB4-208ENST00000498325 STAG3Q9UJ98 1225 aa13.1□□□□□ -0.31
HMGXB4-208ENST00000498325 DCBLD2Q96PD2 775 aa13.08□□□□□ -0.32
HMGXB4-208ENST00000498325 CREBZFQ9NS37 354 aa13.07□□□□□ -0.32
HMGXB4-208ENST00000498325 ZRANB1Q9UGI0 708 aa13.07□□□□□ -0.32
HMGXB4-208ENST00000498325 ZNF579Q8NAF0 562 aaKnown RBP13.06□□□□□ -0.32
HMGXB4-208ENST00000498325 SPDYE4A6NLX3 237 aa13□□□□□ -0.33
HMGXB4-208ENST00000498325 EHMT2Q96KQ7 1210 aa12.94□□□□□ -0.34
HMGXB4-208ENST00000498325 GALR2O43603 387 aaPredicted RBP12.92□□□□□ -0.34
HMGXB4-208ENST00000498325 PAK3O75914 559 aaPredicted RBP12.92□□□□□ -0.34
HMGXB4-208ENST00000498325 NPM1P06748 294 aaKnown RBP eCLIP12.86□□□□□ -0.35
HMGXB4-208ENST00000498325 PHF12Q96QT6 1004 aa12.84□□□□□ -0.35
HMGXB4-208ENST00000498325 MNX1P50219 401 aaPredicted RBP12.79□□□□□ -0.36
HMGXB4-208ENST00000498325 OTUD5Q96G74 571 aa12.74□□□□□ -0.37
HMGXB4-208ENST00000498325 POTEB2H3BUK9 544 aa12.72□□□□□ -0.37
HMGXB4-208ENST00000498325 PLSCR2Q9NRY7 297 aa12.71□□□□□ -0.37
HMGXB4-208ENST00000498325 PELP1Q8IZL8 1130 aaKnown RBP12.69□□□□□ -0.38
HMGXB4-208ENST00000498325 MS4A3Q96HJ5 214 aa12.67□□□□□ -0.38
HMGXB4-208ENST00000498325 ASTLQ6HA08 431 aaPredicted RBP12.63□□□□□ -0.39
HMGXB4-208ENST00000498325 TSPYL2Q9H2G4 693 aaPredicted RBP12.61□□□□□ -0.39
HMGXB4-208ENST00000498325 METRNQ9UJH8 293 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms