RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 FP248Q71RG6 208 aaPredicted RBP7.68□□□□□ -1.18
LIG1-220ENST00000601091 CCDC168Q8NDH2 2452 aa7.67□□□□□ -1.18
LIG1-220ENST00000601091 TRBV7-3A0A075B6L6 115 aa7.67□□□□□ -1.18
LIG1-220ENST00000601091 TRBV7-6A0A0J9YX20 115 aa7.67□□□□□ -1.18
LIG1-220ENST00000601091 LINC01546A6NGU7 62 aa7.67□□□□□ -1.18
LIG1-220ENST00000601091 C10orf99Q6UWK7 81 aa7.67□□□□□ -1.18
LIG1-220ENST00000601091 TRBV10-2A0A0K0K1G8 114 aa7.66□□□□□ -1.18
LIG1-220ENST00000601091 MYO18BQ8IUG5 2567 aa7.66□□□□□ -1.18
LIG1-220ENST00000601091 A0A087WZ39 114 aa7.66□□□□□ -1.18
LIG1-220ENST00000601091 TMEM61Q8N0U2 210 aa7.66□□□□□ -1.18
LIG1-220ENST00000601091 SOCS3O14543 225 aa7.66□□□□□ -1.18
LIG1-220ENST00000601091 PRB1P04280 392 aa7.66□□□□□ -1.18
LIG1-220ENST00000601091 UBE2D3P61077 147 aa7.66□□□□□ -1.18
LIG1-220ENST00000601091 UBE2D2P62837 147 aa7.66□□□□□ -1.18
LIG1-220ENST00000601091 FAM19A3Q7Z5A8 133 aa7.66□□□□□ -1.18
LIG1-220ENST00000601091 GHRHP01286 108 aa7.65□□□□□ -1.18
LIG1-220ENST00000601091 LINC00158P58513 81 aa7.65□□□□□ -1.18
LIG1-220ENST00000601091 IGHV3-30-3P0DP02 117 aa7.65□□□□□ -1.18
LIG1-220ENST00000601091 FUSP35637 526 aaKnown RBP eCLIP7.65□□□□□ -1.18
LIG1-220ENST00000601091 KTN1-AS1Q86SY8 53 aa7.65□□□□□ -1.18
LIG1-220ENST00000601091 PRR15Q8IV56 129 aa7.65□□□□□ -1.18
LIG1-220ENST00000601091 IGIPA6NJ69 53 aa7.65□□□□□ -1.19
LIG1-220ENST00000601091 A0A087WVE0 104 aa7.64□□□□□ -1.19
LIG1-220ENST00000601091 A0A0B4J2C4 111 aa7.64□□□□□ -1.19
LIG1-220ENST00000601091 BEAN1Q3B7T3 259 aa7.64□□□□□ -1.19
LIG1-220ENST00000601091 P0DMU3 169 aa7.64□□□□□ -1.19
LIG1-220ENST00000601091 FAM231AP0DMU4 169 aa7.64□□□□□ -1.19
LIG1-220ENST00000601091 FAM231CP0DMU5 169 aa7.64□□□□□ -1.19
LIG1-220ENST00000601091 JMJD1CQ15652 2540 aa7.64□□□□□ -1.19
LIG1-220ENST00000601091 IGLV4-3A0A075B6K6 122 aa7.63□□□□□ -1.19
LIG1-220ENST00000601091 IGHV1-58A0A0C4DH39 117 aa7.63□□□□□ -1.19
LIG1-220ENST00000601091 CCKP06307 115 aa7.63□□□□□ -1.19
LIG1-220ENST00000601091 Q6ZRU5 148 aa7.63□□□□□ -1.19
LIG1-220ENST00000601091 C6orf223Q8N319 242 aa7.63□□□□□ -1.19
LIG1-220ENST00000601091 NOTCH2Q04721 2471 aa7.63□□□□□ -1.19
LIG1-220ENST00000601091 ZNF292O60281 2723 aa7.63□□□□□ -1.19
LIG1-220ENST00000601091 TMEM223A0PJW6 202 aa7.63□□□□□ -1.19
LIG1-220ENST00000601091 CRPP02741 224 aa7.63□□□□□ -1.19
LIG1-220ENST00000601091 SBSPONQ8IVN8 264 aa7.63□□□□□ -1.19
LIG1-220ENST00000601091 CFHR3Q02985 330 aa7.62□□□□□ -1.19
LIG1-220ENST00000601091 C16orf95Q9H693 158 aa7.62□□□□□ -1.19
LIG1-220ENST00000601091 Q9H8V8 135 aa7.62□□□□□ -1.19
LIG1-220ENST00000601091 DEFB113Q30KQ7 82 aa7.62□□□□□ -1.19
LIG1-220ENST00000601091 ZNF73O43830 326 aaPredicted RBP7.62□□□□□ -1.19
LIG1-220ENST00000601091 KLK9Q2XQG4 91 aa7.62□□□□□ -1.19
LIG1-220ENST00000601091 Q6YL49 198 aa7.62□□□□□ -1.19
LIG1-220ENST00000601091 SNURFQ9Y675 71 aa7.62□□□□□ -1.19
LIG1-220ENST00000601091 A0A0J9YXY3 114 aa7.61□□□□□ -1.19
LIG1-220ENST00000601091 TSHBP01222 138 aa7.61□□□□□ -1.19
LIG1-220ENST00000601091 FN1P02751 2386 aaKnown RBP7.61□□□□□ -1.19
LIG1-220ENST00000601091 IGHV3-30P01768 117 aa7.61□□□□□ -1.19
LIG1-220ENST00000601091 IGHV3-30-5P0DP03 117 aa7.61□□□□□ -1.19
LIG1-220ENST00000601091 TRAV23DV6A0A075B6W5 121 aa7.61□□□□□ -1.19
LIG1-220ENST00000601091 NXPH4O95158 308 aa7.61□□□□□ -1.19
LIG1-220ENST00000601091 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.61□□□□□ -1.19
LIG1-220ENST00000601091 NOP10Q9NPE3 64 aaKnown RBP7.61□□□□□ -1.19
LIG1-220ENST00000601091 XCL1P47992 114 aa7.6□□□□□ -1.19
LIG1-220ENST00000601091 MAP6D1Q9H9H5 199 aa7.6□□□□□ -1.19
LIG1-220ENST00000601091 DEFB130BP0DP73 79 aa7.6□□□□□ -1.19
LIG1-220ENST00000601091 DEFB130AP0DP74 79 aa7.6□□□□□ -1.19
LIG1-220ENST00000601091 C4orf3Q8WVX3 66 aa7.6□□□□□ -1.19
LIG1-220ENST00000601091 ICOSQ9Y6W8 199 aa7.6□□□□□ -1.19
LIG1-220ENST00000601091 F8WEM9 126 aa7.6□□□□□ -1.19
LIG1-220ENST00000601091 IGLV4-69A0A075B6H9 119 aa7.59□□□□□ -1.19
LIG1-220ENST00000601091 PSPHP1O15172 72 aa7.59□□□□□ -1.19
LIG1-220ENST00000601091 UBE2D1P51668 147 aa7.59□□□□□ -1.19
LIG1-220ENST00000601091 PROK1P58294 105 aa7.59□□□□□ -1.19
LIG1-220ENST00000601091 VSIG2Q96IQ7 327 aa7.59□□□□□ -1.19
LIG1-220ENST00000601091 ESM1Q9NQ30 184 aa7.59□□□□□ -1.19
LIG1-220ENST00000601091 C1orf158Q8N1D5 194 aa7.59□□□□□ -1.19
LIG1-220ENST00000601091 KIF25-AS1Q9Y6Z4 181 aa7.59□□□□□ -1.19
LIG1-220ENST00000601091 IGHV3-33P01772 117 aa7.58□□□□□ -1.2
LIG1-220ENST00000601091 DAND5Q8N907 189 aa7.58□□□□□ -1.2
LIG1-220ENST00000601091 LRCOL1A6NCL2 159 aa7.58□□□□□ -1.2
LIG1-220ENST00000601091 K7EQD1 137 aa7.58□□□□□ -1.2
LIG1-220ENST00000601091 RNASE1P07998 156 aaKnown RBP7.58□□□□□ -1.2
LIG1-220ENST00000601091 DEFB114Q30KQ6 69 aa7.58□□□□□ -1.2
LIG1-220ENST00000601091 ZNF580Q9UK33 172 aa7.58□□□□□ -1.2
LIG1-220ENST00000601091 IGHV4-31P0DP07 118 aa7.57□□□□□ -1.2
LIG1-220ENST00000601091 ZNF702PQ9H963 129 aa7.57□□□□□ -1.2
LIG1-220ENST00000601091 MRPS36P82909 103 aaKnown RBP7.57□□□□□ -1.2
LIG1-220ENST00000601091 MIAQ16674 131 aa7.57□□□□□ -1.2
LIG1-220ENST00000601091 OVOL2Q9BRP0 275 aa7.57□□□□□ -1.2
LIG1-220ENST00000601091 LINC00467Q9BRT7 94 aa7.57□□□□□ -1.2
LIG1-220ENST00000601091 CDKN2A-AS1Q9UH64 79 aa7.57□□□□□ -1.2
LIG1-220ENST00000601091 ZNF706Q9Y5V0 76 aaPredicted RBP7.57□□□□□ -1.2
LIG1-220ENST00000601091 LRRK2Q5S007 2527 aa7.57□□□□□ -1.2
LIG1-220ENST00000601091 TRBV10-1A0A0K0K1A3 114 aa7.56□□□□□ -1.2
LIG1-220ENST00000601091 LINC00315P59091 139 aa7.56□□□□□ -1.2
LIG1-220ENST00000601091 REG3AQ06141 175 aa7.56□□□□□ -1.2
LIG1-220ENST00000601091 TRAV13-2A0A0B4J235 113 aa7.56□□□□□ -1.2
LIG1-220ENST00000601091 M0R378 163 aa7.56□□□□□ -1.2
LIG1-220ENST00000601091 C5orf38Q86SI9 138 aa7.56□□□□□ -1.2
LIG1-220ENST00000601091 ABCA2Q9BZC7 2435 aa7.56□□□□□ -1.2
LIG1-220ENST00000601091 Q6ZSV7 163 aa7.55□□□□□ -1.2
LIG1-220ENST00000601091 ZNF575Q86XF7 245 aa7.55□□□□□ -1.2
LIG1-220ENST00000601091 PRM2P04554 102 aa7.55□□□□□ -1.2
LIG1-220ENST00000601091 NDUFS5O43920 106 aa7.55□□□□□ -1.2
LIG1-220ENST00000601091 TSPEAR-AS2P59090 65 aa7.55□□□□□ -1.2
LIG1-220ENST00000601091 HTN3P15516 51 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms